Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48504 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47343 * 300.00012 * 3 2 1 6 6 H 1.48506 * 109.47224 * 60.00231 * 3 2 1 7 7 C 1.38809 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.47501 * 125.58847 * 359.92523 * 9 7 2 11 11 C 1.55271 * 105.08530 * 200.44115 * 10 9 7 12 12 C 1.54376 * 100.53780 * 323.72295 * 11 10 9 13 13 H 1.08999 * 107.18386 * 285.72534 * 12 11 10 14 14 C 1.49496 * 113.33119 * 167.19880 * 12 11 10 15 15 N 1.45563 * 114.73333 * 266.29568 * 14 12 11 16 16 C 1.34773 * 120.19446 * 142.72263 * 15 14 12 17 17 O 1.21593 * 119.99748 * 354.21401 * 16 15 14 18 18 C 1.47527 * 120.00030 * 174.20843 * 16 15 14 19 19 C 1.39439 * 120.24984 * 306.07437 * 18 16 15 20 20 C 1.38287 * 120.27977 * 179.97438 * 19 18 16 21 21 C 1.37879 * 120.72841 * 0.02562 * 20 19 18 22 22 C 1.39674 * 120.10809 * 359.97438 * 21 20 19 23 23 N 1.35861 * 133.51353 * 180.02562 * 22 21 20 24 24 C 1.30093 * 109.53481 * 180.02562 * 23 22 21 25 25 N 1.36123 * 110.04889 * 359.97438 * 24 23 22 26 26 H 0.97005 * 126.30836 * 180.02562 * 25 24 23 27 27 C 1.37515 * 107.38455 * 359.76834 * 25 24 23 28 28 C 1.46779 * 119.61242 * 322.70155 * 15 14 12 29 29 C 1.52962 * 107.44262 * 54.26870 * 28 15 14 30 30 C 1.48269 * 125.61163 * 179.97438 * 9 7 2 31 31 H 1.08999 * 111.19954 * 304.41812 * 30 9 7 32 32 H 0.97008 * 120.00046 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.29486 * 81.55675 * 10 9 7 34 34 H 1.09005 * 110.35757 * 319.35687 * 10 9 7 35 35 H 1.09004 * 111.20721 * 205.89099 * 11 10 9 36 36 H 1.09003 * 111.21205 * 81.56219 * 11 10 9 37 37 H 1.08999 * 108.43239 * 27.65471 * 14 12 11 38 38 H 1.08994 * 108.43068 * 144.93349 * 14 12 11 39 39 H 1.08000 * 119.85685 * 359.97228 * 19 18 16 40 40 H 1.08002 * 119.63559 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.94362 * 180.02562 * 21 20 19 42 42 H 1.08002 * 124.97367 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.86176 * 173.75414 * 28 15 14 44 44 H 1.09000 * 109.86523 * 294.77924 * 28 15 14 45 45 H 1.09000 * 109.39210 * 58.90580 * 29 28 15 46 46 H 1.08998 * 109.39629 * 178.61876 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1426 -2.5318 0.0016 11 6 -0.4072 -3.9697 0.5243 12 6 0.7790 -4.7246 -0.1132 13 1 0.5579 -4.8338 -1.1750 14 6 0.9798 -6.0950 0.4494 15 7 1.9365 -6.1698 1.5439 16 6 1.7180 -7.0046 2.5792 17 8 0.6716 -7.6194 2.6541 18 6 2.7484 -7.1724 3.6216 19 6 4.0515 -7.5236 3.2710 20 6 5.0180 -7.6806 4.2475 21 6 4.7114 -7.4940 5.5787 22 6 3.4135 -7.1418 5.9561 23 7 2.8219 -6.8954 7.1541 24 6 1.5683 -6.6019 6.9680 25 7 1.2723 -6.6398 5.6399 26 1 0.4076 -6.4598 5.2388 27 6 2.4263 -6.9746 4.9711 28 6 3.1407 -5.3312 1.5133 29 6 2.6861 -3.8828 1.3256 30 6 1.9376 -3.7385 -0.0016 31 1 2.6229 -3.8599 -0.8405 32 1 -0.4850 0.8401 0.0004 33 1 -0.5350 -2.4183 -1.0090 34 1 -0.5945 -1.7975 0.6685 35 1 -1.3603 -4.3527 0.1595 36 1 -0.3603 -4.0086 1.6126 37 1 0.0187 -6.4654 0.8059 38 1 1.3212 -6.7499 -0.3521 39 1 4.3070 -7.6737 2.2325 40 1 6.0242 -7.9524 3.9642 41 1 5.4762 -7.6195 6.3309 42 1 0.8653 -6.3632 7.7524 43 1 3.6847 -5.4299 2.4526 44 1 3.7789 -5.6298 0.6816 45 1 2.0259 -3.6015 2.1460 46 1 3.5571 -3.2275 1.3229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036850031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = 75.650354 kcal Electronic energy + Delta-G solvation = -30142.406782 eV Core-core repulsion = 26226.493545 eV Total energy + Delta-G solvation = -3915.913237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.37221 -40.33364 -38.36433 -37.20030 -35.39586 -33.41904 -32.76952 -31.64091 -30.64373 -29.67674 -29.32762 -28.13438 -25.41074 -24.34855 -23.21254 -22.87206 -22.42581 -21.96428 -20.28927 -20.09887 -18.39627 -17.86083 -17.68805 -16.93648 -16.72238 -16.03013 -15.57929 -15.39103 -15.10785 -14.91983 -14.68478 -14.20235 -13.89330 -13.86109 -13.75952 -13.16834 -13.04898 -12.66004 -12.32963 -12.26121 -12.10929 -11.99167 -11.73580 -11.53185 -11.34726 -11.10568 -10.90072 -10.87265 -10.81752 -10.51997 -10.15138 -10.07071 -9.82781 -9.78659 -9.61683 -9.56928 -8.72499 -8.66027 -8.53185 -8.32638 -6.89935 -5.71003 -3.10796 0.49893 1.26984 2.35638 2.68976 2.78079 3.04813 3.35930 3.41482 3.43951 3.61829 4.01626 4.29273 4.43022 4.61469 4.74221 4.97379 5.03602 5.07373 5.09689 5.17044 5.22229 5.35053 5.35983 5.47740 5.49496 5.58662 5.72444 5.81804 5.87041 5.93279 6.00562 6.04248 6.15141 6.20884 6.21279 6.25733 6.34832 6.50347 6.54235 6.56754 6.70891 6.83090 7.01915 7.08911 7.39647 7.48255 7.58434 7.59887 7.80448 8.08378 8.27279 9.16552 9.77169 10.42614 11.34679 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.003298 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.891006 B = 8487.005508 C = 9019.000036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.160 3.840 11 C -0.138 4.138 12 C -0.110 4.110 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.588 5.588 16 C 0.557 3.443 17 O -0.547 6.547 18 C -0.113 4.113 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.045 4.045 22 C 0.040 3.960 23 N -0.496 5.496 24 C 0.266 3.734 25 N -0.593 5.593 26 H 0.429 0.571 27 C 0.089 3.911 28 C 0.100 3.900 29 C -0.138 4.138 30 C 0.171 3.829 31 H 0.042 0.958 32 H 0.251 0.749 33 H 0.015 0.985 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.219 0.781 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -15.812 8.160 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.035 3.965 11 C -0.176 4.176 12 C -0.129 4.129 13 H 0.091 0.909 14 C 0.009 3.991 15 N -0.319 5.319 16 C 0.345 3.655 17 O -0.426 6.426 18 C -0.120 4.120 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.065 4.065 22 C -0.078 4.078 23 N -0.215 5.215 24 C -0.022 4.022 25 N -0.203 5.203 26 H 0.269 0.731 27 C -0.024 4.024 28 C -0.023 4.023 29 C -0.178 4.178 30 C 0.064 3.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.235 0.765 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.834 -15.910 8.938 19.158 hybrid contribution -0.486 1.172 -1.045 1.644 sum 5.349 -14.738 7.893 17.553 Atomic orbital electron populations 1.69880 1.04889 1.24687 1.57523 1.24776 0.95690 0.97648 1.02467 0.86049 0.78686 0.83810 0.77248 1.20518 1.21779 1.21811 1.19074 0.90476 0.82340 1.43051 0.90463 1.44928 1.01614 0.99257 1.86707 1.21820 0.84517 0.91288 0.98839 1.23012 0.95741 0.99261 0.99625 1.21174 0.98122 0.93132 1.00489 0.90872 1.20412 0.93669 0.96927 0.88097 1.47680 1.23311 1.39854 1.21098 1.18293 0.86381 0.79593 0.81232 1.90773 1.26800 1.47890 1.77100 1.18718 0.95038 1.08494 0.89702 1.21090 0.90195 0.97157 1.00227 1.20820 0.99793 1.02996 0.91795 1.20421 0.93177 0.96620 0.96247 1.19034 0.94610 1.05768 0.88370 1.70526 1.05560 1.20411 1.25026 1.25450 0.94235 0.97922 0.84554 1.43176 1.11531 1.57884 1.07679 0.73108 1.18563 0.87777 1.02875 0.93147 1.22017 0.86204 0.91631 1.02461 1.22412 1.01403 0.93089 1.00920 1.20630 0.92462 0.86236 0.94263 0.94047 0.93835 0.96684 0.88742 0.92204 0.92579 0.89641 0.92524 0.84593 0.84536 0.84877 0.76471 0.89703 0.91140 0.91622 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.16 55.49 0.56 -25.85 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -5.88 9.91 -15.06 -0.15 -6.03 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.51 3.05 -162.34 -0.50 -15.01 16 10 C 0.16 3.78 5.73 -2.29 -0.01 3.77 16 11 C -0.14 -2.57 6.43 -24.81 -0.16 -2.73 16 12 C -0.11 -1.83 2.50 -91.86 -0.23 -2.06 16 13 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 14 C 0.13 1.92 5.92 -6.28 -0.04 1.88 16 15 N -0.59 -8.32 3.00 -177.55 -0.53 -8.86 16 16 C 0.56 8.27 7.14 -12.48 -0.09 8.18 16 17 O -0.55 -9.54 16.49 5.28 0.09 -9.45 16 18 C -0.11 -1.48 4.59 -104.95 -0.48 -1.96 16 19 C -0.07 -0.69 7.74 -39.12 -0.30 -0.99 16 20 C -0.13 -1.19 9.99 -39.69 -0.40 -1.59 16 21 C -0.05 -0.47 10.09 -39.18 -0.40 -0.87 16 22 C 0.04 0.52 7.22 -84.71 -0.61 -0.09 16 23 N -0.50 -6.29 11.28 -12.04 -0.14 -6.43 16 24 C 0.27 2.61 12.97 -89.72 -1.16 1.45 16 25 N -0.59 -6.69 6.21 -11.56 -0.07 -6.76 16 26 H 0.43 4.38 8.96 -40.82 -0.37 4.01 16 27 C 0.09 1.18 7.01 -83.77 -0.59 0.60 16 28 C 0.10 1.30 5.56 -3.91 -0.02 1.28 16 29 C -0.14 -2.34 5.19 -26.72 -0.14 -2.48 16 30 C 0.17 3.26 3.40 -67.16 -0.23 3.04 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 2.54 6.13 -51.93 -0.32 2.22 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.32 6.76 -51.93 -0.35 0.97 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.14 1.14 7.74 -52.49 -0.41 0.74 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.08 1.02 5.33 -51.93 -0.28 0.75 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -33.51 366.45 -11.52 -45.04 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.34 Total: 4.14 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -5.10 Total: 1.02 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.67 Total: -62.90 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.51 -11.52 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036850031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.689 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds