Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00173 * 2 1 4 4 H 1.48505 * 109.46605 * 239.99957 * 3 2 1 5 5 H 1.48496 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47238 * 119.99743 * 3 2 1 7 7 C 1.38813 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99509 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00512 * 359.97438 * 7 2 1 10 10 C 1.48157 * 126.39966 * 359.97438 * 9 7 2 11 11 C 1.55295 * 107.04305 * 175.09588 * 10 9 7 12 12 C 1.53741 * 101.83821 * 337.51593 * 11 10 9 13 13 H 1.09000 * 111.30487 * 281.04934 * 12 11 10 14 14 C 1.52238 * 114.75421 * 152.76819 * 12 11 10 15 15 N 1.47715 * 106.36586 * 190.39654 * 14 12 11 16 16 C 1.34775 * 119.68875 * 232.33926 * 15 14 12 17 17 O 1.21587 * 120.00058 * 355.54005 * 16 15 14 18 18 C 1.47528 * 119.99691 * 175.53947 * 16 15 14 19 19 C 1.39437 * 120.24914 * 54.06981 * 18 16 15 20 20 C 1.38292 * 120.28000 * 179.78269 * 19 18 16 21 21 C 1.37879 * 120.72656 * 0.47577 * 20 19 18 22 22 C 1.39678 * 120.10799 * 359.77890 * 21 20 19 23 23 N 1.35853 * 133.51234 * 180.02562 * 22 21 20 24 24 C 1.30089 * 109.53482 * 179.97438 * 23 22 21 25 25 N 1.36118 * 110.05272 * 0.02562 * 24 23 22 26 26 H 0.96994 * 126.31100 * 180.02562 * 25 24 23 27 27 C 1.37511 * 107.37924 * 359.97438 * 25 24 23 28 28 C 1.46600 * 120.62165 * 52.05986 * 15 14 12 29 29 C 1.53947 * 110.58762 * 312.17939 * 28 15 14 30 30 C 1.45467 * 126.40640 * 179.97438 * 9 7 2 31 31 H 1.09007 * 108.78186 * 93.99247 * 30 9 7 32 32 H 0.97000 * 119.99894 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.92312 * 55.74840 * 10 9 7 34 34 H 1.08999 * 110.08818 * 294.53304 * 10 9 7 35 35 H 1.08997 * 110.95580 * 219.38186 * 11 10 9 36 36 H 1.08997 * 110.95693 * 95.65000 * 11 10 9 37 37 H 1.09010 * 110.06653 * 71.18517 * 14 12 11 38 38 H 1.09002 * 110.06861 * 309.61484 * 14 12 11 39 39 H 1.08000 * 119.85827 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.63095 * 180.23658 * 20 19 18 41 41 H 1.07999 * 119.94316 * 179.76173 * 21 20 19 42 42 H 1.08002 * 124.97211 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.25437 * 72.46793 * 28 15 14 44 44 H 1.09002 * 109.25344 * 191.89941 * 28 15 14 45 45 H 1.08998 * 109.88352 * 170.50876 * 29 28 15 46 46 H 1.08997 * 109.88317 * 291.59543 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1468 -2.5533 0.0028 11 6 -0.4343 -4.0742 -0.1232 12 6 0.8676 -4.5897 -0.7579 13 1 0.8903 -4.3936 -1.8299 14 6 1.2004 -6.0409 -0.4405 15 7 2.5814 -6.2646 -0.9148 16 6 2.8458 -7.3007 -1.7351 17 8 1.9675 -8.0930 -2.0165 18 6 4.2011 -7.4736 -2.2917 19 6 5.3074 -7.5226 -1.4443 20 6 6.5777 -7.6891 -1.9650 21 6 6.7726 -7.7992 -3.3255 22 6 5.6815 -7.7479 -4.1960 23 7 5.5580 -7.8259 -5.5467 24 6 4.3036 -7.7225 -5.8755 25 7 3.5395 -7.5709 -4.7593 26 1 2.5749 -7.4729 -4.7325 27 6 4.3870 -7.5834 -3.6765 28 6 3.6658 -5.3666 -0.5065 29 6 3.2469 -3.8960 -0.6848 30 6 1.9078 -3.7212 0.0017 31 1 1.9832 -4.0711 1.0314 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5809 -2.0219 -0.8441 34 1 -0.5655 -2.1722 0.9342 35 1 -1.2862 -4.2569 -0.7781 36 1 -0.5945 -4.5232 0.8570 37 1 0.5129 -6.7055 -0.9639 38 1 1.1418 -6.2116 0.6345 39 1 5.1714 -7.4333 -0.3767 40 1 7.4268 -7.7295 -1.2988 41 1 7.7706 -7.9250 -3.7187 42 1 3.9241 -7.7526 -6.8862 43 1 3.9069 -5.5472 0.5411 44 1 4.5466 -5.5659 -1.1169 45 1 3.9874 -3.2413 -0.2253 46 1 3.1525 -3.6634 -1.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036850032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = 76.166644 kcal Electronic energy + Delta-G solvation = -29964.472689 eV Core-core repulsion = 26048.581840 eV Total energy + Delta-G solvation = -3915.890849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.41273 -40.34554 -38.40993 -37.24512 -35.44046 -33.43872 -32.71634 -31.63462 -30.73655 -29.73334 -29.36831 -28.05999 -25.26816 -24.38903 -23.17098 -22.78848 -22.28718 -21.91429 -20.23490 -19.95965 -19.31372 -18.02664 -17.70653 -16.79670 -16.30212 -16.08490 -15.58120 -15.44398 -15.18391 -14.95052 -14.43552 -14.39579 -13.98965 -13.89797 -13.79307 -13.14032 -13.08324 -12.78042 -12.51605 -12.25097 -12.14438 -11.97657 -11.71313 -11.52764 -11.45586 -10.98183 -10.86567 -10.83572 -10.76330 -10.54262 -10.22274 -10.15622 -9.95814 -9.74727 -9.66962 -9.53671 -8.71783 -8.66369 -8.61401 -8.36398 -6.88594 -5.75732 -3.09217 0.46832 1.23562 2.32545 2.64707 2.73484 2.99036 3.37071 3.41626 3.42823 3.58390 3.98060 4.25004 4.45256 4.57486 4.70605 4.95340 5.00522 5.02726 5.05131 5.12110 5.21740 5.27552 5.44354 5.47110 5.52157 5.55007 5.68765 5.74068 5.81617 5.94708 5.99574 6.07579 6.11251 6.13331 6.16858 6.18004 6.28860 6.40808 6.51430 6.54364 6.57567 6.75439 6.99735 7.04916 7.34485 7.50406 7.55829 7.56330 7.76169 8.03745 8.19826 9.14950 9.78542 10.46270 11.36702 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.003153 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.159030 B = 8877.849430 C = 9541.950539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.595 5.595 16 C 0.556 3.444 17 O -0.547 6.547 18 C -0.116 4.116 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.045 4.045 22 C 0.040 3.960 23 N -0.495 5.495 24 C 0.265 3.735 25 N -0.593 5.593 26 H 0.429 0.571 27 C 0.090 3.910 28 C 0.101 3.899 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.021 0.979 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.219 0.781 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -16.358 -5.439 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.145 4.145 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.326 5.326 16 C 0.343 3.657 17 O -0.426 6.426 18 C -0.122 4.122 19 C -0.088 4.088 20 C -0.154 4.154 21 C -0.064 4.064 22 C -0.078 4.078 23 N -0.215 5.215 24 C -0.022 4.022 25 N -0.203 5.203 26 H 0.268 0.732 27 C -0.023 4.023 28 C -0.022 4.022 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.235 0.765 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.014 -16.593 -6.102 19.844 hybrid contribution -0.772 1.216 0.476 1.517 sum 8.242 -15.377 -5.625 18.331 Atomic orbital electron populations 1.69927 1.04906 1.25197 1.56860 1.24790 0.95672 0.97641 1.02222 0.86234 0.78505 0.83338 0.77898 1.21201 1.21601 1.21137 1.18947 0.90331 0.82312 1.44000 0.90421 1.44201 1.01626 0.99461 1.86646 1.21522 0.83953 0.88209 1.01012 1.22718 0.95655 0.99737 0.99339 1.22633 0.98053 0.93217 1.00600 0.90391 1.21664 0.81246 0.97125 0.99462 1.48286 1.10178 1.27154 1.46995 1.18340 0.87552 0.81191 0.78571 1.90771 1.47501 1.43440 1.60910 1.18750 0.94257 1.09145 0.90016 1.21139 0.91037 0.97196 0.99442 1.20835 0.97044 1.02909 0.94586 1.20429 0.97229 0.97045 0.91716 1.19030 0.92125 1.06347 0.90283 1.70523 1.17364 1.22043 1.11536 1.25444 0.86179 0.97634 0.92971 1.43161 1.10917 1.60631 1.05635 0.73163 1.18543 0.91346 1.03992 0.88432 1.22092 0.89344 0.90355 1.00395 1.21877 0.99461 0.93500 1.01934 1.20646 0.91058 0.87244 0.95146 0.96206 0.93684 0.92780 0.94314 0.92077 0.92252 0.89272 0.90965 0.84475 0.84467 0.84839 0.76477 0.91290 0.89352 0.90360 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.44 55.49 0.58 -25.99 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 8 H 0.08 1.98 7.21 -52.49 -0.38 1.60 16 9 N -0.59 -14.48 3.35 -163.10 -0.55 -15.03 16 10 C 0.18 4.17 5.45 -1.91 -0.01 4.16 16 11 C -0.14 -2.43 6.54 -25.13 -0.16 -2.60 16 12 C -0.12 -2.13 2.86 -89.37 -0.26 -2.39 16 13 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 14 C 0.13 1.85 5.95 -3.76 -0.02 1.83 16 15 N -0.59 -8.32 3.00 -173.72 -0.52 -8.84 16 16 C 0.56 8.07 7.17 -12.47 -0.09 7.98 16 17 O -0.55 -9.34 16.46 5.29 0.09 -9.25 16 18 C -0.12 -1.47 4.80 -104.94 -0.50 -1.98 16 19 C -0.07 -0.69 7.45 -39.12 -0.29 -0.98 16 20 C -0.13 -1.17 9.99 -39.69 -0.40 -1.56 16 21 C -0.04 -0.46 10.09 -39.18 -0.40 -0.85 16 22 C 0.04 0.50 7.22 -84.72 -0.61 -0.11 16 23 N -0.50 -6.10 11.28 -12.05 -0.14 -6.23 16 24 C 0.27 2.48 12.97 -89.73 -1.16 1.31 16 25 N -0.59 -6.36 6.21 -11.56 -0.07 -6.43 16 26 H 0.43 4.06 8.96 -40.82 -0.37 3.69 16 27 C 0.09 1.15 7.01 -83.77 -0.59 0.57 16 28 C 0.10 1.29 5.26 -3.49 -0.02 1.28 16 29 C -0.13 -2.11 5.48 -26.99 -0.15 -2.26 16 30 C 0.17 3.22 2.55 -67.99 -0.17 3.04 16 31 H 0.02 0.40 7.94 -51.92 -0.41 -0.01 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.05 1.42 7.21 -51.93 -0.37 1.05 16 34 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.09 1.33 7.02 -51.92 -0.36 0.97 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.14 1.14 7.33 -52.49 -0.38 0.75 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.01 4.83 -51.93 -0.25 0.76 16 45 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 46 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -33.89 364.88 -11.47 -45.37 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.26 Total: 3.34 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -5.08 Total: 0.94 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.70 Total: -62.52 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.89 -11.47 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036850032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.532 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds