Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48501 * 109.46860 * 240.00237 * 3 2 1 5 5 H 1.48499 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47244 * 120.00452 * 3 2 1 7 7 C 1.38806 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00187 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.47667 * 126.19750 * 359.97036 * 9 7 2 11 11 C 1.54646 * 106.93942 * 178.34570 * 10 9 7 12 12 C 1.56272 * 102.20499 * 335.92058 * 11 10 9 13 13 H 1.09000 * 112.60946 * 158.90946 * 12 11 10 14 14 C 1.51865 * 106.81670 * 282.54754 * 12 11 10 15 15 N 1.43519 * 116.04519 * 130.07051 * 14 12 11 16 16 C 1.34770 * 115.76930 * 180.56425 * 15 14 12 17 17 O 1.21599 * 119.99915 * 4.63250 * 16 15 14 18 18 C 1.47527 * 120.00361 * 184.63285 * 16 15 14 19 19 C 1.39431 * 120.24824 * 303.99694 * 18 16 15 20 20 C 1.38286 * 120.28445 * 180.02562 * 19 18 16 21 21 C 1.37881 * 120.72609 * 359.94707 * 20 19 18 22 22 C 1.39678 * 120.10530 * 0.04358 * 21 20 19 23 23 N 1.35860 * 133.50753 * 180.35004 * 22 21 20 24 24 C 1.30086 * 109.53227 * 180.08333 * 23 22 21 25 25 N 1.36125 * 110.05097 * 359.56832 * 24 23 22 26 26 H 0.97006 * 126.30987 * 180.26837 * 25 24 23 27 27 C 1.37511 * 107.38448 * 0.26264 * 25 24 23 28 28 C 1.44227 * 128.46993 * 0.84749 * 15 14 12 29 29 C 1.51801 * 112.78217 * 5.70313 * 28 15 14 30 30 C 1.46665 * 126.20178 * 179.97438 * 9 7 2 31 31 H 1.08997 * 108.98560 * 90.76266 * 30 9 7 32 32 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.96694 * 58.97504 * 10 9 7 34 34 H 1.09004 * 109.96564 * 297.71639 * 10 9 7 35 35 H 1.08994 * 110.85757 * 217.73724 * 11 10 9 36 36 H 1.09008 * 110.85595 * 94.09518 * 11 10 9 37 37 H 1.09005 * 108.16878 * 8.35717 * 14 12 11 38 38 H 1.09004 * 108.16436 * 251.77509 * 14 12 11 39 39 H 1.08007 * 119.86352 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.63572 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.94641 * 180.02562 * 21 20 19 42 42 H 1.08002 * 124.97309 * 179.83188 * 24 23 22 43 43 H 1.08996 * 108.82747 * 126.76343 * 28 15 14 44 44 H 1.09003 * 108.82680 * 245.07308 * 28 15 14 45 45 H 1.09007 * 109.08923 * 203.86561 * 29 28 15 46 46 H 1.08997 * 108.78644 * 85.17717 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1425 -2.5475 -0.0017 11 6 -0.4308 -4.0662 -0.0458 12 6 0.8757 -4.6318 -0.6901 13 1 1.0234 -5.6906 -0.4774 14 6 0.7874 -4.3521 -2.1802 15 7 1.9348 -3.7258 -2.7728 16 6 1.8458 -3.4694 -4.0929 17 8 0.8075 -3.6893 -4.6864 18 6 3.0081 -2.9218 -4.8180 19 6 3.6078 -1.7375 -4.3915 20 6 4.6969 -1.2233 -5.0709 21 6 5.2073 -1.8704 -6.1763 22 6 4.6248 -3.0584 -6.6237 23 7 4.8983 -3.9057 -7.6499 24 6 4.0455 -4.8880 -7.6419 25 7 3.1749 -4.7419 -6.6057 26 1 2.4468 -5.3412 -6.3784 27 6 3.5179 -3.5883 -5.9405 28 6 3.1727 -3.3401 -2.1414 29 6 3.2587 -3.7882 -0.6935 30 6 1.9174 -3.7299 -0.0028 31 1 2.0479 -4.0608 1.0275 32 1 -0.4850 0.8401 0.0004 33 1 -0.5696 -2.0619 -0.8791 34 1 -0.5639 -2.1148 0.9057 35 1 -1.2964 -4.2788 -0.6730 36 1 -0.5714 -4.4638 0.9594 37 1 -0.0775 -3.7122 -2.3552 38 1 0.6132 -5.2977 -2.6937 39 1 3.2195 -1.2190 -3.5272 40 1 5.1530 -0.3050 -4.7316 41 1 6.0587 -1.4577 -6.6972 42 1 4.0330 -5.7027 -8.3509 43 1 4.0023 -3.7767 -2.6975 44 1 3.2618 -2.2542 -2.1759 45 1 3.9598 -3.1445 -0.1621 46 1 3.6285 -4.8131 -0.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036850033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 81.947690 kcal Electronic energy + Delta-G solvation = -30977.195743 eV Core-core repulsion = 27061.555579 eV Total energy + Delta-G solvation = -3915.640164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23677 -40.41288 -38.31487 -36.99755 -35.09030 -33.31129 -32.85321 -31.91099 -30.45032 -29.50611 -29.27510 -27.73603 -25.39611 -24.38755 -23.29483 -22.80084 -22.33216 -21.82922 -20.16723 -19.85000 -18.24307 -17.65946 -17.48921 -16.56127 -16.41113 -15.97027 -15.68600 -15.28651 -15.23041 -14.80574 -14.44373 -14.07067 -13.99649 -13.84301 -13.62901 -13.22749 -12.93507 -12.55144 -12.16925 -11.99714 -11.94578 -11.82272 -11.51055 -11.41993 -11.23528 -10.97016 -10.78425 -10.77002 -10.73048 -10.38608 -10.23503 -9.99233 -9.88443 -9.75227 -9.66952 -9.44281 -8.64498 -8.47497 -8.22072 -8.05500 -6.86919 -5.74722 -3.07727 0.71653 1.46648 2.53997 2.85135 2.98575 3.35195 3.38268 3.40264 3.43285 3.82201 4.14471 4.44128 4.51021 4.79913 5.01518 5.06063 5.14458 5.21936 5.24117 5.26868 5.37727 5.39905 5.48389 5.51809 5.67559 5.70957 5.83204 5.90506 5.98562 6.03046 6.19027 6.23639 6.28555 6.30839 6.36108 6.39890 6.44756 6.48635 6.62700 6.68709 6.76315 6.83031 7.09717 7.20361 7.50225 7.57962 7.64308 7.71822 7.77758 8.20112 8.41231 9.15786 9.78542 10.46778 11.37427 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004565 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.034298 B = 6132.492267 C = 7520.184104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.081 0.919 14 C 0.144 3.856 15 N -0.563 5.563 16 C 0.544 3.456 17 O -0.547 6.547 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.130 4.130 21 C -0.049 4.049 22 C 0.036 3.964 23 N -0.495 5.495 24 C 0.258 3.742 25 N -0.595 5.595 26 H 0.427 0.573 27 C 0.088 3.912 28 C 0.121 3.879 29 C -0.124 4.124 30 C 0.171 3.829 31 H 0.025 0.975 32 H 0.253 0.747 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.148 0.852 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.216 0.784 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -10.811 -8.643 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.021 3.979 15 N -0.292 5.292 16 C 0.332 3.668 17 O -0.426 6.426 18 C -0.120 4.120 19 C -0.082 4.082 20 C -0.150 4.150 21 C -0.069 4.069 22 C -0.082 4.082 23 N -0.215 5.215 24 C -0.030 4.030 25 N -0.206 5.206 26 H 0.266 0.734 27 C -0.024 4.024 28 C -0.001 4.001 29 C -0.163 4.163 30 C 0.063 3.937 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.233 0.767 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.819 -10.527 -9.427 16.150 hybrid contribution -0.657 0.494 0.729 1.099 sum 7.162 -10.033 -8.698 15.087 Atomic orbital electron populations 1.69930 1.04881 1.25132 1.56470 1.24756 0.95586 0.97455 1.02271 0.86326 0.78581 0.83712 0.77916 1.21062 1.21675 1.21211 1.18852 0.90186 0.82128 1.44252 0.90484 1.44343 1.01383 0.99137 1.86781 1.21307 0.84335 0.88153 1.00959 1.23338 0.95595 0.99836 0.99366 1.22449 0.98729 0.98662 0.93487 0.90066 1.20323 0.87809 0.96425 0.93306 1.46246 1.16470 1.58614 1.07895 1.18372 0.87391 0.78517 0.82565 1.90755 1.30041 1.53549 1.68301 1.18764 0.98853 0.98159 0.96225 1.21430 0.94121 0.93455 0.99144 1.20895 0.97314 1.00900 0.95909 1.20396 0.98985 0.91855 0.95627 1.18980 0.96435 0.97649 0.95104 1.70487 1.25659 1.04047 1.21286 1.25354 0.87203 0.99215 0.91201 1.43106 1.29938 1.21741 1.25803 0.73434 1.18550 0.98322 0.89564 0.95951 1.20940 0.83916 1.01328 0.93965 1.21239 0.99807 1.00568 0.94674 1.20208 0.90522 0.87457 0.95542 0.95725 0.93709 0.93497 0.93964 0.91962 0.92202 0.91183 0.93573 0.83457 0.84495 0.85046 0.76721 0.92753 0.90192 0.90354 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 10.41 55.49 0.58 -25.43 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.90 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -5.68 8.86 -15.06 -0.13 -5.82 16 8 H 0.08 1.84 6.89 -52.48 -0.36 1.47 16 9 N -0.59 -13.64 3.05 -164.17 -0.50 -14.14 16 10 C 0.18 4.10 4.82 -2.54 -0.01 4.09 16 11 C -0.14 -2.55 6.14 -24.11 -0.15 -2.69 16 12 C -0.11 -1.88 3.80 -88.93 -0.34 -2.22 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 14 C 0.14 2.55 4.61 -6.20 -0.03 2.52 16 15 N -0.56 -9.95 3.19 -180.45 -0.58 -10.52 16 16 C 0.54 9.96 7.01 -12.48 -0.09 9.87 16 17 O -0.55 -11.36 16.67 5.28 0.09 -11.28 16 18 C -0.11 -1.84 4.56 -104.95 -0.48 -2.32 16 19 C -0.06 -0.93 8.02 -39.12 -0.31 -1.24 16 20 C -0.13 -1.64 9.99 -39.69 -0.40 -2.04 16 21 C -0.05 -0.63 10.09 -39.17 -0.40 -1.02 16 22 C 0.04 0.52 7.22 -84.71 -0.61 -0.09 16 23 N -0.49 -6.69 11.28 -12.04 -0.14 -6.82 16 24 C 0.26 2.63 12.97 -89.72 -1.16 1.46 16 25 N -0.60 -7.03 6.21 -11.56 -0.07 -7.10 16 26 H 0.43 4.35 8.96 -40.82 -0.37 3.98 16 27 C 0.09 1.31 7.02 -83.77 -0.59 0.72 16 28 C 0.12 1.97 4.40 -5.86 -0.03 1.94 16 29 C -0.12 -1.99 5.08 -28.35 -0.14 -2.13 16 30 C 0.17 3.18 2.93 -68.34 -0.20 2.98 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.05 1.24 7.13 -51.93 -0.37 0.87 16 34 H 0.04 1.09 7.58 -51.93 -0.39 0.70 16 35 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 36 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.07 1.45 6.50 -51.93 -0.34 1.11 16 38 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.15 2.38 6.30 -52.48 -0.33 2.05 16 40 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.22 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.05 0.79 7.33 -51.93 -0.38 0.41 16 44 H 0.08 1.43 4.92 -51.93 -0.26 1.17 16 45 H 0.08 1.26 7.36 -51.92 -0.38 0.88 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -32.72 358.65 -11.50 -44.22 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.10 Total: 5.85 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -5.16 Total: 3.81 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.71 Total: -64.02 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.72 -11.50 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036850033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.167 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds