Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00037 * 2 1 4 4 H 1.48502 * 109.46943 * 85.88211 * 3 2 1 5 5 H 1.48503 * 109.47209 * 325.88275 * 3 2 1 6 6 H 1.48505 * 109.47111 * 205.88247 * 3 2 1 7 7 C 1.38810 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00459 * 170.00933 * 7 2 1 9 9 N 1.36938 * 120.00090 * 350.00969 * 7 2 1 10 10 C 1.47774 * 125.96464 * 354.30091 * 9 7 2 11 11 C 1.55090 * 104.91682 * 201.58417 * 10 9 7 12 12 C 1.56120 * 101.08343 * 322.93618 * 11 10 9 13 13 H 1.08994 * 112.18766 * 157.73941 * 12 11 10 14 14 C 1.53111 * 106.64362 * 281.14898 * 12 11 10 15 15 N 1.46173 * 109.62688 * 159.76038 * 14 12 11 16 16 C 1.34775 * 120.95898 * 121.19038 * 15 14 12 17 17 O 1.21590 * 120.00113 * 354.22381 * 16 15 14 18 18 C 1.47575 * 120.00048 * 174.22343 * 16 15 14 19 19 C 1.41764 * 120.01381 * 323.33117 * 18 16 15 20 20 C 1.35621 * 119.54079 * 180.02562 * 19 18 16 21 21 C 1.41178 * 119.51041 * 0.02562 * 20 19 18 22 22 N 1.32419 * 132.12141 * 179.97438 * 21 20 19 23 23 C 1.33591 * 109.22080 * 180.02562 * 22 21 20 24 24 C 1.34990 * 108.66526 * 0.02562 * 23 22 21 25 25 N 1.37010 * 107.14189 * 359.97438 * 24 23 22 26 26 C 1.35918 * 132.41586 * 180.32163 * 25 24 23 27 27 C 1.46532 * 118.06369 * 301.50299 * 15 14 12 28 28 C 1.51777 * 110.13177 * 53.46779 * 27 15 14 29 29 C 1.46256 * 125.96293 * 173.99492 * 9 7 2 30 30 H 1.09007 * 105.50053 * 70.59181 * 29 9 7 31 31 H 0.96991 * 119.99807 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.34927 * 320.44241 * 10 9 7 33 33 H 1.09003 * 110.35114 * 82.61245 * 10 9 7 34 34 H 1.09001 * 111.10465 * 80.89107 * 11 10 9 35 35 H 1.08998 * 111.10174 * 204.98689 * 11 10 9 36 36 H 1.08993 * 109.53006 * 279.94970 * 14 12 11 37 37 H 1.09006 * 109.52591 * 40.16392 * 14 12 11 38 38 H 1.07999 * 120.22817 * 359.97438 * 19 18 16 39 39 H 1.08003 * 120.24284 * 180.02562 * 20 19 18 40 40 H 1.08002 * 125.66297 * 179.97438 * 23 22 21 41 41 H 1.07997 * 126.42939 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.75735 * 359.92649 * 26 25 24 43 43 H 1.09005 * 109.35775 * 293.26572 * 27 15 14 44 44 H 1.08993 * 109.35933 * 173.67012 * 27 15 14 45 45 H 1.08998 * 108.36429 * 196.93451 * 28 27 15 46 46 H 1.08998 * 108.36704 * 79.83061 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4106 2.0966 1.3965 5 1 1.4939 2.6259 -0.7853 6 1 3.5886 1.4165 -0.6112 7 6 2.0103 -1.2021 0.0005 8 1 3.0780 -1.2094 -0.1617 9 7 1.3411 -2.3790 0.2068 10 6 -0.0880 -2.5148 0.5575 11 6 -0.2080 -3.9180 1.2071 12 6 0.7987 -4.7374 0.3397 13 1 1.1540 -5.6300 0.8544 14 6 0.0801 -5.0683 -0.9712 15 7 1.0640 -5.3945 -2.0017 16 6 1.0481 -6.5913 -2.6214 17 8 0.2759 -7.4558 -2.2544 18 6 1.9680 -6.8524 -3.7455 19 6 2.2741 -5.8188 -4.6661 20 6 3.1203 -6.0695 -5.6959 21 6 3.6832 -7.3566 -5.8358 22 7 4.5195 -7.8682 -6.7260 23 6 4.7545 -9.1481 -6.4238 24 6 4.0532 -9.4660 -5.3150 25 7 3.3709 -8.3412 -4.9324 26 6 2.5273 -8.0884 -3.8971 27 6 2.0722 -4.3853 -2.3364 28 6 2.7920 -3.9294 -1.0803 29 6 1.9147 -3.7211 0.1123 30 1 2.5761 -3.8165 0.9736 31 1 -0.4849 0.8400 0.0004 32 1 -0.3789 -1.7417 1.2686 33 1 -0.7055 -2.4561 -0.3389 34 1 0.1025 -3.8947 2.2517 35 1 -1.2201 -4.3105 1.1092 36 1 -0.5831 -5.9197 -0.8183 37 1 -0.5018 -4.2055 -1.2955 38 1 1.8359 -4.8387 -4.5487 39 1 3.3617 -5.2902 -6.4036 40 1 5.3981 -9.8174 -6.9754 41 1 4.0342 -10.4265 -4.8217 42 1 2.2944 -8.8723 -3.1917 43 1 1.5854 -3.5297 -2.8046 44 1 2.7945 -4.8128 -3.0318 45 1 3.3031 -2.9918 -1.2986 46 1 3.5454 -4.6751 -0.8264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036866699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 103.968296 kcal Electronic energy + Delta-G solvation = -29913.215863 eV Core-core repulsion = 25998.530585 eV Total energy + Delta-G solvation = -3914.685279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.09539 -40.51589 -38.58376 -37.12580 -35.43166 -33.96532 -32.87747 -31.88484 -30.93441 -29.36201 -29.09646 -27.82577 -25.77755 -24.59967 -23.74575 -23.24458 -22.55648 -22.02128 -20.32543 -20.10911 -18.59473 -18.18794 -17.39595 -16.70273 -16.40649 -16.08963 -15.99789 -15.48684 -15.03134 -14.88390 -14.79479 -14.47021 -14.16899 -14.01750 -13.80143 -13.37884 -13.14599 -12.97496 -12.61077 -12.17475 -12.12713 -12.05251 -11.75260 -11.59660 -11.32766 -11.10279 -11.05516 -10.77518 -10.61530 -10.42430 -10.25093 -10.20470 -10.01695 -9.85421 -9.78075 -9.66089 -9.13362 -8.64153 -8.41167 -8.15605 -6.87407 -5.81581 -3.13143 0.32694 0.81471 2.14527 2.35226 2.82164 3.05767 3.32905 3.34618 3.40555 3.42375 3.93919 4.17115 4.29881 4.42096 4.44370 4.62129 4.97785 5.01828 5.07193 5.14540 5.20761 5.21058 5.34922 5.41743 5.47103 5.55537 5.58472 5.68093 5.75472 5.78078 5.84881 6.00399 6.09633 6.12791 6.21049 6.25860 6.30679 6.35896 6.50409 6.55882 6.63056 6.68630 6.85465 6.89796 7.46321 7.46523 7.50500 7.55638 7.72318 8.07295 8.18832 9.11798 9.74930 10.42798 11.30799 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003031 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.885167 B = 9234.693741 C =10410.958329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.105 4.105 13 H 0.077 0.923 14 C 0.120 3.880 15 N -0.588 5.588 16 C 0.569 3.431 17 O -0.544 6.544 18 C -0.146 4.146 19 C -0.079 4.079 20 C -0.085 4.085 21 C 0.233 3.767 22 N -0.494 5.494 23 C 0.032 3.968 24 C -0.097 4.097 25 N -0.367 5.367 26 C 0.121 3.879 27 C 0.104 3.896 28 C -0.136 4.136 29 C 0.171 3.829 30 H 0.009 0.991 31 H 0.253 0.747 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.174 0.826 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -15.933 -7.531 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.045 3.955 11 C -0.182 4.182 12 C -0.125 4.125 13 H 0.096 0.904 14 C -0.002 4.002 15 N -0.319 5.319 16 C 0.356 3.644 17 O -0.423 6.423 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.011 4.011 22 N -0.213 5.213 23 C -0.118 4.118 24 C -0.227 4.227 25 N -0.039 5.039 26 C -0.004 4.004 27 C -0.018 4.018 28 C -0.176 4.176 29 C 0.063 3.937 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.199 0.801 41 H 0.202 0.798 42 H 0.191 0.809 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.772 -15.789 -8.010 18.336 hybrid contribution 0.270 0.454 0.682 0.862 sum 5.042 -15.335 -7.328 17.728 Atomic orbital electron populations 1.69947 1.04924 1.25203 1.56232 1.24768 0.95586 0.97693 1.02123 0.86162 0.78693 0.83679 0.77562 1.21656 1.21806 1.20623 1.18933 0.91231 0.82615 1.42758 0.90515 1.44546 1.07010 0.99188 1.80920 1.21564 0.85285 0.91309 0.97326 1.23284 0.97377 0.98718 0.98858 1.22291 0.97082 0.97631 0.95488 0.90430 1.21676 0.90312 1.01616 0.86594 1.47709 1.31671 1.14282 1.38194 1.17687 0.82881 0.82175 0.81696 1.90790 1.41080 1.44333 1.66054 1.19400 1.02638 0.93622 0.99584 1.21358 0.96838 0.99406 0.92703 1.20204 0.97823 0.92903 0.99537 1.21174 0.99159 0.91482 0.89305 1.70760 1.16405 1.09342 1.24814 1.22549 1.00671 0.92933 0.95630 1.22762 1.04509 0.92002 1.03435 1.42808 1.29950 1.11755 1.19356 1.21553 0.90743 0.98018 0.90114 1.21789 0.90658 0.91032 0.98343 1.21274 0.98849 1.01782 0.95709 1.19447 0.92953 0.86646 0.94608 0.97385 0.93678 0.90989 0.95595 0.91868 0.91846 0.89519 0.90004 0.82676 0.82423 0.80057 0.79821 0.80924 0.90450 0.89780 0.89631 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.37 10.60 55.49 0.59 -24.78 16 2 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 3 Si 0.91 21.03 29.56 -169.99 -5.03 16.01 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.80 9.47 -15.06 -0.14 -5.94 16 8 H 0.08 1.90 7.23 -52.49 -0.38 1.52 16 9 N -0.59 -13.64 3.32 -165.71 -0.55 -14.19 16 10 C 0.17 3.78 5.01 -2.24 -0.01 3.77 16 11 C -0.14 -2.50 6.47 -23.95 -0.15 -2.65 16 12 C -0.11 -1.73 3.72 -89.07 -0.33 -2.06 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.12 1.89 5.49 -4.16 -0.02 1.87 16 15 N -0.59 -8.59 2.94 -175.81 -0.52 -9.11 16 16 C 0.57 8.15 7.35 -12.45 -0.09 8.06 16 17 O -0.54 -9.18 16.24 5.29 0.09 -9.10 16 18 C -0.15 -1.74 5.20 -105.37 -0.55 -2.29 16 19 C -0.08 -0.84 7.37 -39.17 -0.29 -1.12 16 20 C -0.08 -0.89 10.09 -39.40 -0.40 -1.29 16 21 C 0.23 2.86 7.81 -155.93 -1.22 1.64 16 22 N -0.49 -6.35 11.31 -12.72 -0.14 -6.49 16 23 C 0.03 0.32 11.82 -17.94 -0.21 0.11 16 24 C -0.10 -0.88 11.75 -16.39 -0.19 -1.08 16 25 N -0.37 -4.07 2.93 -62.31 -0.18 -4.25 16 26 C 0.12 1.31 10.49 -16.37 -0.17 1.14 16 27 C 0.10 1.45 4.88 -4.65 -0.02 1.43 16 28 C -0.14 -2.21 5.60 -29.07 -0.16 -2.37 16 29 C 0.17 3.23 2.63 -69.96 -0.18 3.05 16 30 H 0.01 0.17 8.06 -51.92 -0.42 -0.25 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.83 6.84 -51.93 -0.36 1.47 16 33 H 0.03 0.62 7.06 -51.93 -0.37 0.25 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 36 H 0.09 1.35 6.99 -51.93 -0.36 0.98 16 37 H 0.08 1.41 6.49 -51.93 -0.34 1.07 16 38 H 0.16 1.48 6.25 -52.49 -0.33 1.15 16 39 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.17 1.60 7.96 -52.49 -0.42 1.18 16 43 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 44 H 0.08 0.98 4.53 -51.93 -0.24 0.75 16 45 H 0.09 1.51 6.74 -51.93 -0.35 1.16 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -31.50 359.89 -10.62 -42.12 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.06 Total: 2.33 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.25 Total: 2.04 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.81 Total: -58.82 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.50 -10.62 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036866699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.090 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds