Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99671 * 2 1 4 4 H 1.48502 * 109.47231 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46920 * 120.00343 * 3 2 1 7 7 C 1.38813 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.47432 * 126.05744 * 359.97438 * 9 7 2 11 11 C 1.54496 * 107.15447 * 181.59631 * 10 9 7 12 12 C 1.56021 * 102.61969 * 22.83088 * 11 10 9 13 13 H 1.08998 * 112.89972 * 202.91020 * 12 11 10 14 14 C 1.53206 * 106.36070 * 78.29128 * 12 11 10 15 15 N 1.46534 * 110.25421 * 202.96502 * 14 12 11 16 16 C 1.34769 * 121.02059 * 235.57235 * 15 14 12 17 17 O 1.21593 * 120.00254 * 356.00226 * 16 15 14 18 18 C 1.47574 * 120.00322 * 176.00024 * 16 15 14 19 19 C 1.41762 * 120.01173 * 51.35664 * 18 16 15 20 20 C 1.35628 * 119.54022 * 179.97438 * 19 18 16 21 21 C 1.41177 * 119.50451 * 0.02562 * 20 19 18 22 22 N 1.32422 * 132.11200 * 179.97438 * 21 20 19 23 23 C 1.33594 * 109.22060 * 180.02562 * 22 21 20 24 24 C 1.34990 * 108.66304 * 359.97438 * 23 22 21 25 25 N 1.37013 * 107.14697 * 0.02562 * 24 23 22 26 26 C 1.35914 * 132.42556 * 180.30005 * 25 24 23 27 27 C 1.47146 * 117.96872 * 55.50264 * 15 14 12 28 28 C 1.53052 * 107.73609 * 302.66387 * 27 15 14 29 29 C 1.46468 * 126.05476 * 180.02562 * 9 7 2 30 30 H 1.09003 * 108.33626 * 269.14448 * 29 9 7 31 31 H 0.96994 * 120.00448 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.90515 * 300.98315 * 10 9 7 33 33 H 1.09005 * 109.89748 * 62.03597 * 10 9 7 34 34 H 1.08993 * 110.78271 * 141.11141 * 11 10 9 35 35 H 1.09005 * 110.78021 * 264.36219 * 11 10 9 36 36 H 1.08994 * 109.35077 * 323.15993 * 14 12 11 37 37 H 1.09002 * 109.34772 * 82.71224 * 14 12 11 38 38 H 1.07992 * 120.23003 * 359.96397 * 19 18 16 39 39 H 1.08000 * 120.24796 * 180.02562 * 20 19 18 40 40 H 1.08004 * 125.66757 * 180.02562 * 23 22 21 41 41 H 1.08009 * 126.43204 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.75628 * 359.92230 * 26 25 24 43 43 H 1.08993 * 109.81653 * 183.09035 * 27 15 14 44 44 H 1.08996 * 109.81666 * 62.23891 * 27 15 14 45 45 H 1.09003 * 109.15023 * 174.78382 * 28 27 15 46 46 H 1.08999 * 109.15070 * 293.94662 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1404 -2.5437 0.0005 11 6 -0.4377 -4.0592 0.0412 12 6 0.8724 -4.6474 0.6511 13 1 1.0218 -5.6979 0.4019 14 6 0.7987 -4.3918 2.1598 15 7 2.1439 -4.3937 2.7409 16 6 2.4584 -5.2155 3.7617 17 8 1.6018 -5.9183 4.2625 18 6 3.8424 -5.2626 4.2717 19 6 4.5094 -4.0624 4.6242 20 6 5.7812 -4.1169 5.0924 21 6 6.4217 -5.3684 5.2211 22 7 7.6309 -5.7081 5.6406 23 6 7.7629 -7.0357 5.5732 24 6 6.6127 -7.5608 5.1003 25 7 5.7554 -6.5165 4.8731 26 6 4.4789 -6.4623 4.4096 27 6 3.1415 -3.4719 2.1749 28 6 3.2675 -3.7812 0.6812 29 6 1.9202 -3.7267 -0.0005 30 1 2.0453 -4.0463 -1.0351 31 1 -0.4850 0.8400 0.0004 32 1 -0.5644 -2.0586 0.8797 33 1 -0.5608 -2.1045 -0.9043 34 1 -1.2919 -4.2686 0.6850 35 1 -0.6082 -4.4470 -0.9632 36 1 0.3300 -3.4244 2.3398 37 1 0.2013 -5.1731 2.6297 38 1 4.0085 -3.1114 4.5205 39 1 6.3000 -3.2096 5.3647 40 1 8.6434 -7.5960 5.8516 41 1 6.4071 -8.6076 4.9318 42 1 3.9659 -7.3749 4.1439 43 1 4.1031 -3.6214 2.6656 44 1 2.8127 -2.4418 2.3124 45 1 3.9321 -3.0509 0.2196 46 1 3.6913 -4.7777 0.5570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036866700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = 100.008773 kcal Electronic energy + Delta-G solvation = -30195.779528 eV Core-core repulsion = 26280.922551 eV Total energy + Delta-G solvation = -3914.856977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.04751 -40.40676 -38.57400 -37.07203 -35.18693 -33.92795 -32.86399 -31.72936 -30.89306 -29.28557 -29.04826 -27.69085 -25.67699 -24.60668 -23.73925 -23.10612 -22.54076 -21.98393 -20.27746 -19.98945 -18.57936 -18.18417 -17.35113 -16.62860 -16.33191 -16.20700 -15.96555 -15.35548 -14.95875 -14.87016 -14.78048 -14.42648 -14.05968 -13.98549 -13.77582 -13.39051 -13.01908 -12.96389 -12.46942 -12.22787 -12.05677 -12.01528 -11.61722 -11.53630 -11.28633 -11.18095 -11.00332 -10.82636 -10.70906 -10.39247 -10.26961 -10.15589 -10.00011 -9.79165 -9.73146 -9.66921 -9.07328 -8.66702 -8.35663 -8.12208 -6.89386 -5.78493 -3.11771 0.40171 0.87568 2.16710 2.43584 2.80702 3.11262 3.33787 3.34289 3.39573 3.41378 3.97961 4.20918 4.33340 4.42357 4.49317 4.66687 5.03585 5.06105 5.08548 5.18108 5.21349 5.28350 5.42630 5.48991 5.50045 5.59793 5.64110 5.71501 5.79386 5.82795 5.95126 6.02647 6.13725 6.19203 6.20761 6.26805 6.34231 6.34464 6.46163 6.58713 6.67754 6.72362 6.79507 6.83677 7.49154 7.54214 7.55362 7.59509 7.74954 8.14027 8.17784 9.13575 9.75801 10.43110 11.33376 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003420 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.274743 B = 8184.129387 C = 9423.425159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.117 4.117 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.586 5.586 16 C 0.566 3.434 17 O -0.544 6.544 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.082 4.082 21 C 0.232 3.768 22 N -0.494 5.494 23 C 0.032 3.968 24 C -0.098 4.098 25 N -0.365 5.365 26 C 0.111 3.889 27 C 0.103 3.897 28 C -0.128 4.128 29 C 0.170 3.830 30 H 0.017 0.983 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.171 0.829 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -13.268 7.129 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.316 5.316 16 C 0.353 3.647 17 O -0.423 6.423 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.102 4.102 21 C -0.012 4.012 22 N -0.214 5.214 23 C -0.119 4.119 24 C -0.228 4.228 25 N -0.037 5.037 26 C -0.013 4.013 27 C -0.019 4.019 28 C -0.167 4.167 29 C 0.063 3.937 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.199 0.801 41 H 0.201 0.799 42 H 0.188 0.812 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.887 -12.906 7.643 17.435 hybrid contribution -0.128 0.291 -0.473 0.570 sum 8.760 -12.616 7.170 16.950 Atomic orbital electron populations 1.69934 1.04873 1.25206 1.56604 1.24771 0.95621 0.97542 1.02205 0.86281 0.78525 0.83523 0.77903 1.21225 1.21681 1.21143 1.18896 0.90330 0.82152 1.44225 0.90386 1.44308 1.01466 0.99309 1.86827 1.21252 0.84302 0.88239 1.01085 1.23137 0.95794 0.99609 0.99568 1.22749 0.98028 0.98499 0.94427 0.90437 1.21626 0.81997 1.03315 0.92577 1.47991 1.13729 1.37622 1.32258 1.17710 0.86533 0.80272 0.80220 1.90800 1.49317 1.43720 1.58454 1.19406 0.96257 0.92926 1.05855 1.21203 0.94042 0.98132 0.96681 1.20194 0.94425 0.94471 1.01156 1.21147 0.89740 0.87965 1.02375 1.70754 1.14438 1.13654 1.22531 1.22534 0.97890 0.90448 1.00995 1.22749 0.91899 0.93409 1.14722 1.42776 1.10447 1.09478 1.40965 1.21441 0.83020 0.99773 0.97099 1.22128 0.91013 0.94616 0.94112 1.21579 0.99277 1.00806 0.95030 1.20223 0.90670 0.87160 0.95695 0.96520 0.93674 0.93470 0.93896 0.91946 0.92279 0.89887 0.90065 0.82935 0.82447 0.80102 0.79880 0.81215 0.90245 0.88661 0.90436 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.37 10.38 55.49 0.58 -24.79 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.23 -5.64 9.02 -15.06 -0.14 -5.77 16 8 H 0.08 1.84 6.69 -52.49 -0.35 1.49 16 9 N -0.59 -13.34 3.12 -164.55 -0.51 -13.85 16 10 C 0.18 3.90 4.64 -2.75 -0.01 3.89 16 11 C -0.14 -2.45 6.29 -24.33 -0.15 -2.60 16 12 C -0.12 -1.90 3.86 -88.40 -0.34 -2.24 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C 0.13 2.08 5.44 -3.92 -0.02 2.06 16 15 N -0.59 -8.94 2.94 -174.20 -0.51 -9.45 16 16 C 0.57 8.47 7.21 -12.46 -0.09 8.38 16 17 O -0.54 -9.63 16.48 5.28 0.09 -9.55 16 18 C -0.14 -1.72 4.99 -105.37 -0.53 -2.24 16 19 C -0.08 -0.85 7.37 -39.17 -0.29 -1.14 16 20 C -0.08 -0.90 10.09 -39.40 -0.40 -1.30 16 21 C 0.23 2.93 7.81 -155.92 -1.22 1.72 16 22 N -0.49 -6.52 11.31 -12.72 -0.14 -6.66 16 23 C 0.03 0.32 11.82 -17.94 -0.21 0.11 16 24 C -0.10 -0.92 11.75 -16.39 -0.19 -1.11 16 25 N -0.36 -4.18 2.93 -62.30 -0.18 -4.36 16 26 C 0.11 1.25 10.59 -16.37 -0.17 1.08 16 27 C 0.10 1.53 5.43 -3.66 -0.02 1.51 16 28 C -0.13 -2.02 5.19 -27.66 -0.14 -2.16 16 29 C 0.17 3.13 2.84 -68.41 -0.19 2.94 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 1.16 6.99 -51.93 -0.36 0.80 16 33 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 34 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.55 6.80 -51.93 -0.35 1.20 16 37 H 0.08 1.32 7.01 -51.93 -0.36 0.95 16 38 H 0.15 1.55 7.14 -52.49 -0.37 1.17 16 39 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.18 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.08 0.99 4.46 -51.93 -0.23 0.76 16 44 H 0.10 1.64 7.48 -51.93 -0.39 1.26 16 45 H 0.08 1.27 7.01 -51.93 -0.36 0.91 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -31.10 360.07 -10.61 -41.72 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.11 Total: 2.88 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -4.21 Total: 2.89 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.78 Total: -59.12 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.10 -10.61 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036866700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.726 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds