Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47373 * 299.99907 * 3 2 1 6 6 H 1.48500 * 109.47340 * 60.00336 * 3 2 1 7 7 C 1.38811 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00426 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.48226 * 126.39917 * 359.93114 * 9 7 2 11 11 C 1.55291 * 107.00793 * 175.08509 * 10 9 7 12 12 C 1.53744 * 101.87675 * 337.56777 * 11 10 9 13 13 H 1.09003 * 111.30696 * 280.14441 * 12 11 10 14 14 C 1.52241 * 114.74517 * 152.74498 * 12 11 10 15 15 N 1.47717 * 106.36678 * 190.42351 * 14 12 11 16 16 C 1.34780 * 119.68116 * 232.08331 * 15 14 12 17 17 O 1.21580 * 120.00263 * 356.24572 * 16 15 14 18 18 C 1.47575 * 119.99739 * 176.24830 * 16 15 14 19 19 C 1.41762 * 120.01290 * 50.08009 * 18 16 15 20 20 C 1.35633 * 119.54094 * 179.73044 * 19 18 16 21 21 C 1.41177 * 119.50515 * 0.54347 * 20 19 18 22 22 N 1.32409 * 132.11825 * 179.73013 * 21 20 19 23 23 C 1.33600 * 109.22315 * 180.02562 * 22 21 20 24 24 C 1.34991 * 108.66178 * 359.97438 * 23 22 21 25 25 N 1.37008 * 107.14283 * 0.02562 * 24 23 22 26 26 C 1.35916 * 132.41954 * 180.02562 * 25 24 23 27 27 C 1.46593 * 120.63124 * 52.05617 * 15 14 12 28 28 C 1.53954 * 110.57811 * 312.17107 * 27 15 14 29 29 C 1.45460 * 126.40351 * 180.02562 * 9 7 2 30 30 H 1.08998 * 108.77997 * 94.00325 * 29 9 7 31 31 H 0.96994 * 120.00340 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.90832 * 55.76147 * 10 9 7 33 33 H 1.09000 * 109.95805 * 294.43604 * 10 9 7 34 34 H 1.09000 * 110.95016 * 219.41476 * 11 10 9 35 35 H 1.08997 * 110.95875 * 95.72640 * 11 10 9 36 36 H 1.09002 * 110.06410 * 309.63258 * 14 12 11 37 37 H 1.08997 * 110.06547 * 71.10217 * 14 12 11 38 38 H 1.08000 * 120.22932 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.24767 * 180.27434 * 20 19 18 40 40 H 1.08004 * 125.66456 * 179.97438 * 23 22 21 41 41 H 1.08004 * 126.43031 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.75492 * 359.96385 * 26 25 24 43 43 H 1.08999 * 109.25879 * 72.45969 * 27 15 14 44 44 H 1.09003 * 109.25735 * 191.93219 * 27 15 14 45 45 H 1.09005 * 109.88345 * 170.51322 * 28 27 15 46 46 H 1.08998 * 109.88467 * 291.59485 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1474 -2.5533 0.0014 11 6 -0.4340 -4.0742 -0.1266 12 6 0.8680 -4.5891 -0.7617 13 1 0.8840 -4.4062 -1.8362 14 6 1.2008 -6.0406 -0.4451 15 7 2.5820 -6.2638 -0.9189 16 6 2.8477 -7.3025 -1.7357 17 8 1.9673 -8.0896 -2.0243 18 6 4.2075 -7.4843 -2.2796 19 6 5.3281 -7.4547 -1.4118 20 6 6.5731 -7.6284 -1.9212 21 6 6.7351 -7.8244 -3.3099 22 7 7.8094 -8.0105 -4.0611 23 6 7.4360 -8.1477 -5.3365 24 6 6.0916 -8.0481 -5.4061 25 7 5.6353 -7.8432 -4.1305 26 6 4.3872 -7.6753 -3.6192 27 6 3.6663 -5.3662 -0.5096 28 6 3.2474 -3.8954 -0.6875 29 6 1.9079 -3.7210 -0.0005 30 1 1.9824 -4.0714 1.0289 31 1 -0.4850 0.8400 0.0004 32 1 -0.5817 -2.0210 -0.8448 33 1 -0.5630 -2.1744 0.9351 34 1 -1.2859 -4.2564 -0.7817 35 1 -0.5947 -4.5245 0.8529 36 1 1.1417 -6.2119 0.6297 37 1 0.5124 -6.7047 -0.9678 38 1 5.1911 -7.2998 -0.3518 39 1 7.4345 -7.6124 -1.2699 40 1 8.0996 -8.3111 -6.1728 41 1 5.4887 -8.1170 -6.2995 42 1 3.5313 -7.6927 -4.2777 43 1 3.9068 -5.5473 0.5380 44 1 4.5472 -5.5647 -1.1201 45 1 3.9876 -3.2409 -0.2273 46 1 3.1535 -3.6624 -1.7481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036866701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 100.817529 kcal Electronic energy + Delta-G solvation = -29625.746414 eV Core-core repulsion = 25710.924508 eV Total energy + Delta-G solvation = -3914.821906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.13141 -40.57058 -38.57741 -37.19740 -35.56366 -34.04286 -32.78682 -31.67650 -31.06384 -29.51098 -29.13731 -28.16616 -25.31425 -24.63438 -23.72987 -22.90105 -22.42221 -22.05268 -20.33359 -20.03779 -19.31613 -18.36111 -17.52249 -16.74706 -16.39543 -16.26777 -16.01266 -15.39431 -15.04891 -14.95093 -14.82578 -14.48628 -14.14567 -13.97641 -13.81603 -13.49719 -13.19572 -12.94183 -12.75765 -12.54339 -12.16556 -12.02895 -11.74118 -11.59443 -11.50583 -11.30123 -10.89159 -10.84729 -10.78313 -10.46617 -10.27944 -10.13746 -10.01712 -9.89952 -9.68901 -9.56312 -9.15370 -8.69347 -8.67998 -8.21371 -6.89577 -5.76976 -3.10440 0.30163 0.77562 2.06438 2.33198 2.68462 2.91128 3.22165 3.35697 3.41230 3.43708 3.88208 4.07921 4.22710 4.36674 4.44116 4.56159 4.89901 4.92452 4.98879 5.04632 5.11100 5.17478 5.24462 5.43286 5.46888 5.49355 5.52117 5.58216 5.68933 5.71845 5.80033 5.92501 6.03883 6.05748 6.08938 6.14318 6.24520 6.27570 6.38233 6.52999 6.55549 6.64027 6.72520 6.98034 7.25841 7.49929 7.52024 7.55703 7.75763 7.94411 8.18575 9.13747 9.77436 10.44881 11.35551 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.002952 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.943508 B = 9482.248548 C =10699.651187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.125 4.125 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.594 5.594 16 C 0.567 3.433 17 O -0.538 6.538 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.081 4.081 21 C 0.230 3.770 22 N -0.492 5.492 23 C 0.033 3.967 24 C -0.095 4.095 25 N -0.366 5.366 26 C 0.118 3.882 27 C 0.102 3.898 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.022 0.978 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -16.602 -5.558 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.325 5.325 16 C 0.354 3.646 17 O -0.416 6.416 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.101 4.101 21 C -0.014 4.014 22 N -0.212 5.212 23 C -0.118 4.118 24 C -0.224 4.224 25 N -0.038 5.038 26 C -0.007 4.007 27 C -0.021 4.021 28 C -0.168 4.168 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.200 0.800 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.512 -16.775 -5.485 20.049 hybrid contribution -0.387 1.094 -0.437 1.240 sum 9.125 -15.682 -5.923 19.085 Atomic orbital electron populations 1.69940 1.04902 1.24982 1.56978 1.24792 0.95678 0.97663 1.02262 0.86089 0.78733 0.83933 0.77265 1.20504 1.21801 1.21748 1.19032 0.90372 0.82283 1.43773 0.90316 1.44237 1.01651 0.99455 1.86627 1.21549 0.83919 0.88259 1.01021 1.22719 0.95677 0.99703 0.99360 1.22651 0.98055 0.93129 1.00684 0.90220 1.21704 0.80922 0.97325 0.99518 1.48222 1.10330 1.26827 1.47130 1.17797 0.86528 0.81430 0.78875 1.90810 1.46971 1.43693 1.60090 1.19366 0.95340 1.07737 0.92735 1.21148 0.90452 0.97960 1.00740 1.20181 0.98701 1.01391 0.89836 1.21148 0.81887 1.05008 0.93333 1.70751 1.25957 1.21869 1.02631 1.22557 0.92607 1.01797 0.94807 1.22791 0.96858 1.16468 0.86319 1.42786 1.06961 1.45035 1.08985 1.21487 0.86559 0.97698 0.94971 1.22133 0.89042 0.90576 1.00365 1.21895 0.99556 0.93313 1.02084 1.20648 0.90979 0.87302 0.95137 0.96121 0.93771 0.92699 0.94295 0.92016 0.92248 0.90895 0.89041 0.83151 0.82451 0.79998 0.79757 0.81105 0.91102 0.89592 0.90323 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.44 55.49 0.58 -25.77 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -5.96 9.88 -15.06 -0.15 -6.11 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.60 -14.22 3.35 -163.02 -0.55 -14.77 16 10 C 0.18 4.09 5.45 -1.88 -0.01 4.08 16 11 C -0.14 -2.37 6.53 -25.13 -0.16 -2.54 16 12 C -0.12 -2.06 2.86 -89.35 -0.26 -2.32 16 13 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.13 1.75 5.94 -3.76 -0.02 1.73 16 15 N -0.59 -7.66 3.00 -173.71 -0.52 -8.18 16 16 C 0.57 7.47 7.20 -12.45 -0.09 7.38 16 17 O -0.54 -8.64 16.40 5.30 0.09 -8.55 16 18 C -0.15 -1.59 4.88 -105.37 -0.51 -2.11 16 19 C -0.08 -0.72 7.37 -39.17 -0.29 -1.01 16 20 C -0.08 -0.76 10.09 -39.40 -0.40 -1.16 16 21 C 0.23 2.70 7.81 -155.93 -1.22 1.48 16 22 N -0.49 -6.13 11.31 -12.72 -0.14 -6.28 16 23 C 0.03 0.31 11.82 -17.94 -0.21 0.10 16 24 C -0.09 -0.85 11.75 -16.39 -0.19 -1.04 16 25 N -0.37 -3.94 2.93 -62.31 -0.18 -4.12 16 26 C 0.12 1.23 10.58 -16.37 -0.17 1.06 16 27 C 0.10 1.19 5.07 -3.49 -0.02 1.17 16 28 C -0.13 -2.02 5.48 -26.97 -0.15 -2.17 16 29 C 0.17 3.12 2.55 -67.96 -0.17 2.95 16 30 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 33 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.09 1.29 7.02 -51.93 -0.36 0.93 16 38 H 0.15 1.06 7.05 -52.49 -0.37 0.69 16 39 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.19 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.17 1.53 8.06 -52.48 -0.42 1.10 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.87 4.67 -51.93 -0.24 0.63 16 45 H 0.08 1.25 7.62 -51.93 -0.40 0.86 16 46 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -33.13 364.86 -10.67 -43.80 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.30 Total: 0.68 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -4.12 Total: 1.19 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.81 Total: -59.11 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.13 -10.67 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036866701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.620 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds