Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48489 * 109.47239 * 240.00288 * 3 2 1 5 5 H 1.48501 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46750 * 119.99840 * 3 2 1 7 7 C 1.38811 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99822 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.47778 * 125.96110 * 0.02562 * 9 7 2 11 11 C 1.55102 * 104.91727 * 201.53750 * 10 9 7 12 12 C 1.56118 * 101.08019 * 322.94573 * 11 10 9 13 13 H 1.09000 * 112.18855 * 158.29474 * 12 11 10 14 14 C 1.53107 * 106.64719 * 281.15121 * 12 11 10 15 15 N 1.46696 * 109.12426 * 160.07988 * 14 12 11 16 16 C 1.34773 * 120.97805 * 121.18870 * 15 14 12 17 17 O 1.21618 * 120.00019 * 353.20322 * 16 15 14 18 18 C 1.47386 * 120.00167 * 173.19546 * 16 15 14 19 19 N 1.31572 * 126.82466 * 354.07398 * 18 16 15 20 20 N 1.28376 * 111.97213 * 179.97438 * 19 18 16 21 21 H 0.96994 * 124.37793 * 179.97438 * 20 19 18 22 22 C 1.37049 * 111.25468 * 359.97438 * 20 19 18 23 23 C 1.39131 * 134.72896 * 180.02562 * 22 20 19 24 24 C 1.36683 * 119.78227 * 179.97438 * 23 22 20 25 25 C 1.38893 * 120.89843 * 0.02562 * 24 23 22 26 26 C 1.36718 * 120.52373 * 359.97438 * 25 24 23 27 27 C 1.39197 * 119.51030 * 359.73159 * 26 25 24 28 28 C 1.46531 * 118.04625 * 301.17584 * 15 14 12 29 29 C 1.51781 * 110.13506 * 53.76073 * 28 15 14 30 30 C 1.46251 * 125.96441 * 179.71826 * 9 7 2 31 31 H 1.09005 * 105.49959 * 70.63760 * 30 9 7 32 32 H 0.97003 * 119.99889 * 359.97438 * 1 2 3 33 33 H 1.08996 * 110.35195 * 320.40102 * 10 9 7 34 34 H 1.09002 * 110.34856 * 82.67911 * 10 9 7 35 35 H 1.09003 * 111.09587 * 80.89615 * 11 10 9 36 36 H 1.08990 * 111.10177 * 204.99176 * 11 10 9 37 37 H 1.09001 * 109.52876 * 279.97561 * 14 12 11 38 38 H 1.09001 * 109.52931 * 40.18334 * 14 12 11 39 39 H 1.07999 * 120.10306 * 0.02562 * 23 22 20 40 40 H 1.08006 * 119.54886 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.73794 * 180.02562 * 25 24 23 42 42 H 1.08006 * 120.24444 * 180.02562 * 26 25 24 43 43 H 1.08996 * 109.36001 * 173.96567 * 28 15 14 44 44 H 1.08997 * 109.35666 * 293.69852 * 28 15 14 45 45 H 1.09000 * 108.36557 * 79.85798 * 29 28 15 46 46 H 1.08998 * 108.36026 * 197.13285 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1442 -2.5416 -0.0028 11 6 -0.3969 -3.9698 0.5466 12 6 0.7955 -4.7513 -0.0896 13 1 1.0241 -5.6677 0.4545 14 6 0.4097 -5.0319 -1.5445 15 7 1.6232 -5.3210 -2.3163 16 6 1.7707 -6.4940 -2.9634 17 8 0.9497 -7.3787 -2.8134 18 6 2.9269 -6.7047 -3.8528 19 7 3.8303 -5.8121 -4.1968 20 7 4.7150 -6.3038 -4.9864 21 1 5.4623 -5.8041 -5.3506 22 6 4.4672 -7.6259 -5.2486 23 6 5.0909 -8.6059 -6.0143 24 6 4.5668 -9.8675 -6.0602 25 6 3.4160 -10.1879 -5.3516 26 6 2.7833 -9.2441 -4.5913 27 6 3.3037 -7.9548 -4.5258 28 6 2.6702 -4.2970 -2.3633 29 6 3.0617 -3.8850 -0.9559 30 6 1.9213 -3.7237 -0.0081 31 1 2.3619 -3.8510 0.9808 32 1 -0.4850 0.8401 0.0004 33 1 -0.6035 -1.7981 0.6486 34 1 -0.5339 -2.4510 -1.0167 35 1 -0.3412 -3.9871 1.6350 36 1 -1.3527 -4.3608 0.1982 37 1 -0.2608 -5.8903 -1.5846 38 1 -0.0895 -4.1584 -1.9640 39 1 5.9865 -8.3707 -6.5700 40 1 5.0543 -10.6254 -6.6555 41 1 3.0184 -11.1909 -5.4009 42 1 1.8889 -9.4984 -4.0418 43 1 3.5435 -4.6964 -2.8790 44 1 2.2992 -3.4255 -2.9027 45 1 3.7412 -4.6368 -0.5545 46 1 3.5959 -2.9366 -1.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036885121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 102.605903 kcal Electronic energy + Delta-G solvation = -29880.943729 eV Core-core repulsion = 25966.199372 eV Total energy + Delta-G solvation = -3914.744357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68315 -39.92906 -38.09078 -37.97887 -35.12441 -33.02085 -32.47642 -31.75568 -30.45015 -30.22689 -29.19977 -27.64231 -25.71495 -24.36299 -23.64412 -22.82853 -22.56471 -22.35011 -20.10210 -19.57077 -18.48093 -18.02171 -17.62300 -16.60016 -16.12668 -16.02708 -15.73850 -15.47737 -15.15330 -14.59947 -14.45815 -14.30929 -14.07082 -13.89138 -13.60904 -13.00176 -12.83185 -12.64439 -12.41699 -12.25304 -12.09736 -11.73004 -11.59660 -11.30718 -11.19059 -10.96204 -10.88837 -10.61117 -10.42477 -10.34872 -10.15712 -10.04987 -9.89999 -9.69034 -9.61193 -9.47038 -9.00511 -8.61229 -8.39521 -8.13315 -6.78424 -5.66258 -3.04838 0.61513 1.13319 1.77477 2.46027 3.16880 3.27941 3.39607 3.44105 3.45344 3.62323 4.16113 4.27328 4.48270 4.53209 4.73042 4.90036 5.11851 5.18610 5.30097 5.33457 5.37363 5.41665 5.53789 5.58669 5.69597 5.72903 5.79710 5.93688 5.99490 6.10082 6.14646 6.19151 6.26801 6.28276 6.41006 6.43099 6.50030 6.55529 6.65136 6.72345 6.77175 6.86536 7.01069 7.05485 7.52722 7.57632 7.64147 7.74809 7.86942 8.31763 8.35397 9.22196 9.84628 10.51731 11.39777 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002936 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.097543 B = 9535.569289 C =10621.437441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.105 4.105 13 H 0.077 0.923 14 C 0.121 3.879 15 N -0.585 5.585 16 C 0.600 3.400 17 O -0.541 6.541 18 C 0.017 3.983 19 N -0.201 5.201 20 N -0.420 5.420 21 H 0.446 0.554 22 C 0.066 3.934 23 C -0.123 4.123 24 C -0.084 4.084 25 C -0.144 4.144 26 C -0.040 4.040 27 C -0.110 4.110 28 C 0.095 3.905 29 C -0.134 4.134 30 C 0.172 3.828 31 H 0.006 0.994 32 H 0.252 0.748 33 H 0.099 0.901 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 -17.741 -11.178 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.032 3.968 11 C -0.181 4.181 12 C -0.125 4.125 13 H 0.096 0.904 14 C -0.001 4.001 15 N -0.316 5.316 16 C 0.386 3.614 17 O -0.417 6.417 18 C -0.154 4.154 19 N -0.030 5.030 20 N -0.139 5.139 21 H 0.291 0.709 22 C -0.048 4.048 23 C -0.144 4.144 24 C -0.105 4.105 25 C -0.163 4.163 26 C -0.060 4.060 27 C -0.117 4.117 28 C -0.028 4.028 29 C -0.174 4.174 30 C 0.064 3.936 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.129 0.871 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.638 -16.825 -10.914 21.836 hybrid contribution 0.929 0.609 -0.396 1.180 sum 9.568 -16.216 -11.311 21.964 Atomic orbital electron populations 1.69839 1.04844 1.24894 1.57330 1.24752 0.95672 0.97554 1.02538 0.86204 0.78435 0.83337 0.77821 1.21298 1.21647 1.21243 1.18922 0.90393 0.82325 1.43169 0.90570 1.44484 1.01793 0.99246 1.86171 1.21920 0.84676 0.91708 0.98533 1.23290 0.95950 0.98976 0.99932 1.22291 0.97422 0.97675 0.95123 0.90431 1.21769 0.85716 1.01822 0.90795 1.47818 1.19856 1.15493 1.48417 1.16714 0.83196 0.82252 0.79250 1.90757 1.43558 1.42285 1.65118 1.22890 0.97993 0.90405 1.04087 1.72955 0.99522 1.25248 1.05250 1.43269 1.24436 1.07489 1.38661 0.70903 1.19229 0.97862 0.86565 1.01116 1.19774 1.01336 0.91880 1.01399 1.20738 0.95830 0.95493 0.98401 1.20842 0.96672 0.99817 0.99004 1.20438 0.99092 0.90075 0.96405 1.19420 0.96579 0.94699 1.01012 1.21995 0.91422 0.90952 0.98393 1.21200 0.99539 1.01633 0.95048 1.19336 0.91620 0.86656 0.95966 0.97641 0.93726 0.88363 0.96802 0.91900 0.91985 0.89572 0.90172 0.85480 0.85208 0.85276 0.84304 0.87051 0.91301 0.93432 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.18 55.49 0.56 -25.86 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.90 9.59 -15.06 -0.14 -6.04 16 8 H 0.08 1.97 7.02 -52.48 -0.37 1.60 16 9 N -0.59 -14.58 3.32 -165.90 -0.55 -15.13 16 10 C 0.16 3.70 5.35 -2.23 -0.01 3.69 16 11 C -0.14 -2.69 6.47 -23.95 -0.15 -2.85 16 12 C -0.11 -1.92 3.70 -89.08 -0.33 -2.25 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.12 2.14 5.54 -3.88 -0.02 2.12 16 15 N -0.59 -10.15 2.94 -175.46 -0.52 -10.67 16 16 C 0.60 10.36 7.69 -12.54 -0.10 10.26 16 17 O -0.54 -10.19 15.88 5.26 0.08 -10.11 16 18 C 0.02 0.26 7.03 -80.76 -0.57 -0.31 16 19 N -0.20 -2.68 8.61 34.46 0.30 -2.39 16 20 N -0.42 -4.25 6.85 32.34 0.22 -4.03 16 21 H 0.45 2.78 8.96 -190.50 -1.71 1.07 16 22 C 0.07 0.70 7.38 -84.21 -0.62 0.08 16 23 C -0.12 -0.98 10.03 -39.81 -0.40 -1.38 16 24 C -0.08 -0.63 9.96 -39.90 -0.40 -1.02 16 25 C -0.14 -1.26 9.98 -39.89 -0.40 -1.65 16 26 C -0.04 -0.47 9.88 -39.78 -0.39 -0.86 16 27 C -0.11 -1.46 6.34 -105.05 -0.67 -2.13 16 28 C 0.10 1.62 6.18 -4.64 -0.03 1.60 16 29 C -0.13 -2.46 5.60 -29.24 -0.16 -2.63 16 30 C 0.17 3.56 2.61 -70.14 -0.18 3.37 16 31 H 0.01 0.13 8.05 -51.93 -0.42 -0.29 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.10 2.64 6.09 -51.93 -0.32 2.32 16 34 H 0.01 0.35 7.10 -51.93 -0.37 -0.02 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 37 H 0.09 1.48 7.01 -51.93 -0.36 1.11 16 38 H 0.08 1.53 6.49 -51.93 -0.34 1.19 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.14 1.67 7.67 -52.48 -0.40 1.26 16 43 H 0.11 1.72 4.15 -69.05 -0.29 1.43 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.60 6.62 -51.93 -0.34 1.25 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -32.14 359.68 -11.60 -43.73 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.42 Total: 2.65 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -4.67 Total: -0.36 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.02 Total: -58.07 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.14 -11.60 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.341 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds