Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48505 * 109.47065 * 270.00253 * 3 2 1 5 5 H 1.48503 * 109.47268 * 29.99953 * 3 2 1 6 6 H 1.48493 * 109.47187 * 150.00511 * 3 2 1 7 7 C 1.38804 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00393 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.40397 * 359.97438 * 9 7 2 11 11 C 1.55289 * 107.04693 * 184.92575 * 10 9 7 12 12 C 1.53424 * 101.41490 * 22.97206 * 11 10 9 13 13 H 1.09003 * 111.72725 * 78.34830 * 12 11 10 14 14 C 1.52701 * 114.11069 * 206.66708 * 12 11 10 15 15 N 1.47715 * 106.13417 * 169.60703 * 14 12 11 16 16 C 1.34779 * 119.68435 * 127.88562 * 15 14 12 17 17 O 1.21614 * 119.99997 * 186.83417 * 16 15 14 18 18 C 1.47394 * 119.99988 * 6.82873 * 16 15 14 19 19 N 1.31572 * 126.81903 * 6.47451 * 18 16 15 20 20 N 1.28387 * 111.96278 * 179.97438 * 19 18 16 21 21 H 0.97002 * 124.37112 * 179.97438 * 20 19 18 22 22 C 1.37044 * 111.25521 * 0.02562 * 20 19 18 23 23 C 1.39131 * 134.72669 * 179.97438 * 22 20 19 24 24 C 1.36678 * 119.78666 * 180.02562 * 23 22 20 25 25 C 1.38900 * 120.89318 * 359.97438 * 24 23 22 26 26 C 1.36718 * 120.52735 * 0.02562 * 25 24 23 27 27 C 1.39191 * 119.50668 * 0.02562 * 26 25 24 28 28 C 1.46600 * 120.63542 * 307.61509 * 15 14 12 29 29 C 1.53957 * 110.57416 * 48.09518 * 28 15 14 30 30 C 1.45465 * 126.40860 * 180.02562 * 9 7 2 31 31 H 1.09006 * 109.26259 * 265.54311 * 30 9 7 32 32 H 0.96995 * 120.00373 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.92299 * 304.28069 * 10 9 7 34 34 H 1.09002 * 109.91912 * 65.38012 * 10 9 7 35 35 H 1.09002 * 110.95641 * 140.61473 * 11 10 9 36 36 H 1.09004 * 110.95580 * 264.34636 * 11 10 9 37 37 H 1.08999 * 110.23019 * 50.44565 * 14 12 11 38 38 H 1.09002 * 110.13883 * 288.72062 * 14 12 11 39 39 H 1.07997 * 120.10368 * 0.02562 * 23 22 20 40 40 H 1.07995 * 119.55250 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.74035 * 180.02562 * 25 24 23 42 42 H 1.07993 * 120.24845 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.25799 * 168.38196 * 28 15 14 44 44 H 1.09000 * 109.25293 * 287.81807 * 28 15 14 45 45 H 1.09005 * 109.87955 * 68.40685 * 29 28 15 46 46 H 1.08996 * 109.88218 * 189.48897 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1466 -2.5534 0.0005 11 6 -0.4338 -4.0742 0.1276 12 6 0.8656 -4.5759 0.7709 13 1 0.8924 -4.3685 1.8407 14 6 1.1909 -6.0357 0.4630 15 7 2.5712 -6.2581 0.9398 16 6 2.8339 -7.2902 1.7658 17 8 3.9386 -7.4070 2.2607 18 6 1.7822 -8.2773 2.0694 19 7 0.5876 -8.3500 1.5228 20 7 -0.1001 -9.3237 1.9996 21 1 -1.0044 -9.5417 1.7247 22 6 0.6081 -10.0147 2.9479 23 6 0.3471 -11.1185 3.7535 24 6 1.3027 -11.5665 4.6219 25 6 2.5362 -10.9344 4.7130 26 6 2.8190 -9.8477 3.9330 27 6 1.8594 -9.3746 3.0427 28 6 3.6591 -5.3703 0.5186 29 6 3.2485 -3.8957 0.6829 30 6 1.9080 -3.7210 -0.0005 31 1 1.9786 -4.0826 -1.0265 32 1 -0.4850 0.8400 0.0004 33 1 -0.5795 -2.0217 0.8478 34 1 -0.5640 -2.1702 -0.9306 35 1 -1.2847 -4.2568 0.7838 36 1 -0.5955 -4.5236 -0.8523 37 1 1.1322 -6.2167 -0.6102 38 1 0.5017 -6.6935 0.9926 39 1 -0.6076 -11.6198 3.6928 40 1 1.0959 -12.4234 5.2458 41 1 3.2780 -11.3044 5.4054 42 1 3.7796 -9.3600 4.0072 43 1 4.5409 -5.5681 1.1281 44 1 3.8956 -5.5632 -0.5278 45 1 3.1588 -3.6516 1.7415 46 1 3.9909 -3.2498 0.2142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036885122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 101.501589 kcal Electronic energy + Delta-G solvation = -29658.725580 eV Core-core repulsion = 25743.933336 eV Total energy + Delta-G solvation = -3914.792243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.73441 -39.98781 -38.16722 -38.01102 -35.22751 -33.00806 -32.53318 -31.72779 -30.47528 -30.07283 -29.38864 -27.98262 -25.37549 -24.25990 -23.53405 -23.02344 -22.64166 -21.68086 -20.06141 -19.78058 -19.01553 -18.19396 -17.79143 -16.56169 -16.33279 -16.07128 -15.65411 -15.54235 -15.00107 -14.74382 -14.50230 -14.27213 -14.00984 -13.85195 -13.62654 -13.13333 -13.00660 -12.59205 -12.48868 -12.36371 -12.15372 -11.86661 -11.50949 -11.38908 -11.36775 -10.93591 -10.79727 -10.64012 -10.58525 -10.37024 -10.17116 -10.10395 -9.89590 -9.84554 -9.58778 -9.31296 -9.02239 -8.60025 -8.53075 -8.28585 -6.80774 -5.69246 -3.01944 0.57044 1.09908 1.71906 2.41163 3.03753 3.21357 3.41659 3.46972 3.48510 3.57709 4.07333 4.22664 4.45979 4.51985 4.70376 4.84824 5.05230 5.10112 5.15530 5.31963 5.35474 5.42409 5.47615 5.56589 5.64378 5.69216 5.75717 5.89926 5.92671 5.94313 6.10214 6.15801 6.21871 6.24804 6.26117 6.30557 6.43371 6.49659 6.54268 6.64893 6.71072 6.76335 6.93676 7.12071 7.42910 7.57662 7.61870 7.63879 7.83147 8.21540 8.27018 9.22217 9.85791 10.53821 11.43447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.002654 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.490100 B =10545.679517 C =11189.577749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.101 3.899 15 N -0.591 5.591 16 C 0.599 3.401 17 O -0.539 6.539 18 C 0.015 3.985 19 N -0.201 5.201 20 N -0.420 5.420 21 H 0.446 0.554 22 C 0.066 3.934 23 C -0.122 4.122 24 C -0.083 4.083 25 C -0.143 4.143 26 C -0.041 4.041 27 C -0.110 4.110 28 C 0.116 3.884 29 C -0.128 4.128 30 C 0.166 3.834 31 H 0.021 0.979 32 H 0.251 0.749 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -24.319 6.017 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.098 0.902 14 C -0.022 4.022 15 N -0.322 5.322 16 C 0.384 3.616 17 O -0.414 6.414 18 C -0.155 4.155 19 N -0.030 5.030 20 N -0.138 5.138 21 H 0.291 0.709 22 C -0.047 4.047 23 C -0.143 4.143 24 C -0.104 4.104 25 C -0.162 4.162 26 C -0.061 4.061 27 C -0.117 4.117 28 C -0.006 4.006 29 C -0.167 4.167 30 C 0.058 3.942 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.953 -23.571 5.462 24.214 hybrid contribution 0.150 0.541 0.279 0.627 sum -0.803 -23.029 5.741 23.748 Atomic orbital electron populations 1.69939 1.04880 1.24960 1.57303 1.24783 0.95680 0.97610 1.02467 0.86153 0.78629 0.83683 0.77528 1.21674 1.21762 1.20697 1.19015 0.90399 0.82342 1.43376 0.90359 1.44224 1.01629 0.99528 1.86589 1.21524 0.83986 0.88315 1.00936 1.22639 0.95750 0.99800 0.99202 1.22688 0.97780 0.93360 1.00568 0.90225 1.22597 0.81433 0.97898 1.00251 1.48154 1.10460 1.27301 1.46324 1.16806 0.85598 0.80205 0.78949 1.90764 1.22898 1.75543 1.52238 1.22847 0.92878 0.99604 1.00215 1.72964 1.04891 1.05743 1.19397 1.43263 1.16215 1.22701 1.31616 0.70864 1.19216 0.92832 0.97322 0.95355 1.19778 1.00963 0.95787 0.97819 1.20745 0.93051 0.99359 0.97262 1.20853 0.97543 0.96897 1.00952 1.20434 0.98565 0.94765 0.92310 1.19407 0.94995 0.96891 1.00390 1.21703 0.89397 0.89601 0.99900 1.21869 0.99208 0.93585 1.02027 1.20666 0.91281 0.87148 0.95121 0.96217 0.93829 0.92833 0.94406 0.92274 0.92229 0.91191 0.86491 0.85440 0.85173 0.85253 0.84320 0.89143 0.91701 0.91395 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.43 55.49 0.58 -26.57 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.14 9.88 -15.06 -0.15 -6.29 16 8 H 0.08 2.08 7.23 -52.48 -0.38 1.70 16 9 N -0.60 -14.98 3.34 -163.15 -0.55 -15.52 16 10 C 0.18 4.25 5.44 -1.92 -0.01 4.24 16 11 C -0.14 -2.47 6.51 -25.30 -0.16 -2.63 16 12 C -0.12 -2.21 2.86 -89.32 -0.26 -2.46 16 13 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 14 C 0.10 1.51 5.58 -3.53 -0.02 1.49 16 15 N -0.59 -9.30 2.99 -173.49 -0.52 -9.82 16 16 C 0.60 9.70 7.65 -12.53 -0.10 9.60 16 17 O -0.54 -9.71 15.77 5.27 0.08 -9.62 16 18 C 0.02 0.22 6.99 -80.76 -0.56 -0.35 16 19 N -0.20 -2.46 8.53 34.46 0.29 -2.17 16 20 N -0.42 -3.90 6.85 32.34 0.22 -3.68 16 21 H 0.45 2.41 8.96 -190.49 -1.71 0.70 16 22 C 0.07 0.67 7.38 -84.21 -0.62 0.05 16 23 C -0.12 -0.92 10.03 -39.81 -0.40 -1.32 16 24 C -0.08 -0.59 9.96 -39.90 -0.40 -0.99 16 25 C -0.14 -1.20 9.98 -39.89 -0.40 -1.60 16 26 C -0.04 -0.46 9.88 -39.78 -0.39 -0.85 16 27 C -0.11 -1.40 6.34 -105.05 -0.67 -2.06 16 28 C 0.12 1.82 6.35 -3.49 -0.02 1.80 16 29 C -0.13 -2.33 5.47 -27.00 -0.15 -2.47 16 30 C 0.17 3.38 2.57 -68.03 -0.17 3.21 16 31 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 34 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.12 1.64 4.20 -73.85 -0.31 1.33 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.14 1.61 7.68 -52.49 -0.40 1.21 16 43 H 0.09 1.41 6.92 -51.93 -0.36 1.05 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 46 H 0.08 1.40 7.65 -51.93 -0.40 1.00 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -33.34 363.93 -11.68 -45.02 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.68 Total: 0.68 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -4.58 Total: -1.01 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.03 Total: -57.76 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.34 -11.68 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036885122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.523 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds