Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48503 * 109.47495 * 264.99495 * 3 2 1 5 5 H 1.48507 * 109.46913 * 24.99353 * 3 2 1 6 6 H 1.48497 * 109.47332 * 144.99215 * 3 2 1 7 7 C 1.38811 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00223 * 190.79846 * 7 2 1 9 9 N 1.37121 * 120.00215 * 10.79561 * 7 2 1 10 10 C 1.44765 * 120.01056 * 207.10894 * 9 7 2 11 11 C 1.51384 * 113.05601 * 266.90697 * 10 9 7 12 12 C 1.50930 * 114.60075 * 295.27431 * 11 10 9 13 13 H 1.09848 * 110.73850 * 179.00425 * 12 11 10 14 14 C 1.54271 * 108.96926 * 300.97947 * 12 11 10 15 15 C 1.54086 * 104.45124 * 90.59203 * 14 12 11 16 16 C 1.52113 * 105.45198 * 13.79107 * 15 14 12 17 17 H 1.09536 * 108.07929 * 121.65387 * 16 15 14 18 18 C 1.49221 * 120.03794 * 26.78565 * 9 7 2 19 19 N 1.47840 * 109.36272 * 4.36438 * 16 15 14 20 20 C 1.34887 * 127.24895 * 158.04918 * 19 16 15 21 21 O 1.21633 * 120.00473 * 174.31326 * 20 19 16 22 22 C 1.47266 * 119.99736 * 354.31031 * 20 19 16 23 23 C 1.38936 * 120.90315 * 11.87138 * 22 20 19 24 24 C 1.39775 * 119.18697 * 179.76841 * 23 22 20 25 25 C 1.35064 * 121.27352 * 0.50110 * 24 23 22 26 26 N 1.36228 * 121.76922 * 359.75297 * 25 24 23 27 27 N 1.40084 * 132.48313 * 179.97438 * 26 25 24 28 28 C 1.31352 * 108.88439 * 180.02562 * 27 26 25 29 29 C 1.38886 * 108.94326 * 0.02562 * 28 27 26 30 30 C 1.37178 * 120.19323 * 0.02562 * 26 25 24 31 31 H 0.96998 * 120.00280 * 0.02562 * 1 2 3 32 32 H 1.08789 * 109.43975 * 144.65361 * 10 9 7 33 33 H 1.09457 * 108.31955 * 27.08550 * 10 9 7 34 34 H 1.09381 * 108.45394 * 173.78479 * 11 10 9 35 35 H 1.09306 * 108.57877 * 57.10526 * 11 10 9 36 36 H 1.09246 * 110.64797 * 331.57343 * 14 12 11 37 37 H 1.09266 * 110.60415 * 209.53934 * 14 12 11 38 38 H 1.08965 * 110.77140 * 254.07804 * 15 14 12 39 39 H 1.09308 * 110.18037 * 132.52608 * 15 14 12 40 40 H 1.09194 * 109.48033 * 16.57527 * 18 9 7 41 41 H 1.09193 * 109.48315 * 257.24155 * 18 9 7 42 42 H 1.07995 * 120.40342 * 359.97438 * 23 22 20 43 43 H 1.08000 * 119.35853 * 180.23583 * 24 23 22 44 44 H 1.08002 * 119.11369 * 179.73286 * 25 24 23 45 45 H 1.08003 * 125.53419 * 180.02562 * 28 27 26 46 46 H 1.08003 * 126.21395 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3987 2.6809 0.5916 6 1 3.4908 1.4730 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0760 -1.2105 0.1747 9 7 1.3429 -2.3791 -0.2235 10 6 1.8557 -3.6171 0.3241 11 6 2.7530 -4.3647 -0.6390 12 6 2.0618 -4.8600 -1.8860 13 1 2.7726 -5.3758 -2.5459 14 6 0.9111 -5.8039 -1.4803 15 6 -0.3131 -4.8789 -1.3381 16 6 0.0929 -3.5662 -1.9906 17 1 -0.6171 -3.3536 -2.7971 18 6 0.0839 -2.3837 -1.0245 19 7 1.4355 -3.7124 -2.5921 20 6 1.9735 -2.9671 -3.5793 21 8 3.1329 -3.1358 -3.9059 22 6 1.1569 -1.9492 -4.2618 23 6 -0.0787 -1.5676 -3.7539 24 6 -0.8217 -0.5944 -4.4282 25 6 -0.3658 -0.0278 -5.5663 26 7 0.8363 -0.3716 -6.1071 27 7 1.5166 0.0605 -7.2528 28 6 2.6572 -0.5852 -7.3389 29 6 2.7645 -1.4564 -6.2626 30 6 1.6221 -1.3165 -5.4975 31 1 -0.4850 0.8400 -0.0004 32 1 1.0246 -4.2561 0.6148 33 1 2.4334 -3.3823 1.2237 34 1 3.1843 -5.2228 -0.1154 35 1 3.5758 -3.7069 -0.9304 36 1 1.1331 -6.2959 -0.5305 37 1 0.7371 -6.5536 -2.2560 38 1 -0.5613 -4.7251 -0.2883 39 1 -1.1722 -5.3074 -1.8607 40 1 0.0062 -1.4505 -1.5861 41 1 -0.7740 -2.4660 -0.3541 42 1 -0.4588 -2.0149 -2.8474 43 1 -1.7808 -0.2929 -4.0337 44 1 -0.9707 0.7177 -6.0611 45 1 3.3925 -0.4591 -8.1199 46 1 3.5908 -2.1217 -6.0601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039399362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 148.153085 kcal Electronic energy + Delta-G solvation = -31767.446205 eV Core-core repulsion = 27854.676922 eV Total energy + Delta-G solvation = -3912.769282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70109 -40.34023 -37.62531 -36.86640 -34.70193 -33.60994 -31.98414 -31.22428 -31.07754 -30.41562 -28.20101 -27.30379 -25.92299 -24.36351 -23.90872 -22.54762 -22.15373 -21.18288 -20.79823 -19.43669 -18.54259 -17.74303 -17.00784 -16.38462 -15.90414 -15.69074 -15.35193 -15.24976 -15.22595 -14.73936 -14.20070 -13.80463 -13.60059 -13.32676 -13.20606 -13.08635 -12.94045 -12.61448 -12.31424 -12.15625 -11.83936 -11.71446 -11.57666 -11.31592 -11.29886 -10.89493 -10.77803 -10.70959 -10.58987 -10.40100 -10.20998 -10.07500 -10.02172 -9.79778 -9.48249 -9.37396 -9.12847 -8.54764 -8.08970 -7.36702 -6.76923 -5.87754 -3.28919 0.64821 1.36816 2.38858 2.93891 3.05093 3.33897 3.35561 3.40916 3.44673 3.93063 4.39398 4.44641 4.66497 4.73348 4.82396 4.91570 5.08120 5.09359 5.15707 5.27851 5.35514 5.50434 5.55171 5.61675 5.64792 5.74313 5.84059 5.85250 5.92073 5.99213 6.05152 6.15562 6.22427 6.23438 6.33148 6.39575 6.42689 6.48742 6.53959 6.73259 6.79143 6.84503 6.94604 7.03508 7.15458 7.30440 7.73385 7.74678 8.06018 8.36093 8.67047 9.12489 9.77484 10.28073 11.21918 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.006293 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.658221 B = 4448.327681 C = 5890.364505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.580 5.580 10 C 0.157 3.843 11 C -0.155 4.155 12 C 0.150 3.850 13 H 0.080 0.920 14 C -0.125 4.125 15 C -0.120 4.120 16 C 0.080 3.920 17 H 0.075 0.925 18 C 0.144 3.856 19 N -0.582 5.582 20 C 0.599 3.401 21 O -0.543 6.543 22 C -0.121 4.121 23 C -0.071 4.071 24 C -0.166 4.166 25 C 0.123 3.877 26 N -0.284 5.284 27 N -0.327 5.327 28 C 0.073 3.927 29 C -0.267 4.267 30 C 0.136 3.864 31 H 0.254 0.746 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.196 0.804 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.191 0.809 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -8.366 -7.026 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.082 0.918 9 N -0.302 5.302 10 C 0.029 3.971 11 C -0.196 4.196 12 C 0.047 3.953 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.025 4.025 17 H 0.093 0.907 18 C 0.018 3.982 19 N -0.314 5.314 20 C 0.389 3.611 21 O -0.423 6.423 22 C -0.126 4.126 23 C -0.093 4.093 24 C -0.188 4.188 25 C -0.003 4.003 26 N -0.051 5.051 27 N -0.150 5.150 28 C -0.104 4.104 29 C -0.295 4.295 30 C 0.016 3.984 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.212 0.788 43 H 0.177 0.823 44 H 0.182 0.818 45 H 0.207 0.793 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.570 -7.300 -7.925 11.704 hybrid contribution 1.022 0.620 0.384 1.255 sum -3.548 -6.681 -7.542 10.682 Atomic orbital electron populations 1.69913 1.04911 1.25394 1.55506 1.24927 0.95440 0.97958 1.00810 0.86370 0.79212 0.83771 0.77909 1.21521 1.21565 1.20451 1.19197 0.91071 0.84040 1.42834 0.91839 1.43793 1.26030 1.02422 1.57908 1.20009 0.95316 0.88134 0.93612 1.22028 1.00764 1.00124 0.96651 1.21532 0.94672 0.85845 0.93266 0.90182 1.22512 0.94846 0.97143 1.01829 1.22082 0.97507 0.94034 1.02157 1.22816 0.84130 0.98374 0.97140 0.90722 1.22063 0.89510 0.94663 0.91938 1.48467 1.16576 1.31925 1.34436 1.16917 0.85865 0.79909 0.78400 1.90725 1.16450 1.68725 1.66359 1.20306 0.96102 1.01314 0.94904 1.23695 0.92180 0.93606 0.99776 1.20781 1.02934 0.99983 0.95146 1.21466 0.84560 0.99248 0.94992 1.46129 1.13720 1.27204 1.18048 1.77755 1.09405 1.25763 1.02096 1.23841 0.94626 0.93629 0.98339 1.21417 1.00705 1.09391 0.98026 1.20171 0.92640 0.91932 0.93614 0.93632 0.94768 0.93665 0.92501 0.92059 0.90076 0.91628 0.89742 0.91325 0.87963 0.93829 0.78805 0.82336 0.81763 0.79260 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.10 10.87 55.49 0.60 -23.50 16 2 C 0.01 0.16 5.07 -17.43 -0.09 0.08 16 3 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.39 9.58 -14.97 -0.14 -6.53 16 8 H 0.06 1.74 7.85 -52.48 -0.41 1.33 16 9 N -0.58 -13.22 2.65 -173.18 -0.46 -13.68 16 10 C 0.16 3.02 5.24 -5.79 -0.03 2.99 16 11 C -0.15 -2.67 5.03 -28.59 -0.14 -2.81 16 12 C 0.15 2.40 3.50 -67.16 -0.24 2.17 16 13 H 0.08 1.29 8.12 -51.45 -0.42 0.88 16 14 C -0.12 -1.54 6.05 -25.50 -0.15 -1.69 16 15 C -0.12 -1.54 5.73 -26.62 -0.15 -1.70 16 16 C 0.08 1.30 2.20 -67.80 -0.15 1.15 16 17 H 0.08 1.10 5.39 -51.63 -0.28 0.82 16 18 C 0.14 2.92 3.81 -2.69 -0.01 2.91 16 19 N -0.58 -10.60 2.38 -157.81 -0.38 -10.97 16 20 C 0.60 12.42 7.81 -12.54 -0.10 12.32 16 21 O -0.54 -12.50 15.69 5.25 0.08 -12.41 16 22 C -0.12 -2.35 6.05 -102.68 -0.62 -2.97 16 23 C -0.07 -1.20 7.26 -38.75 -0.28 -1.48 16 24 C -0.17 -2.35 9.90 -40.14 -0.40 -2.75 16 25 C 0.12 1.77 11.12 -16.73 -0.19 1.59 16 26 N -0.28 -5.00 3.89 -9.42 -0.04 -5.03 16 27 N -0.33 -5.63 12.66 30.51 0.39 -5.25 16 28 C 0.07 1.14 11.95 -17.52 -0.21 0.93 16 29 C -0.27 -4.81 10.20 -39.35 -0.40 -5.21 16 30 C 0.14 2.62 6.84 -82.20 -0.56 2.05 16 31 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.03 0.59 5.55 -52.05 -0.29 0.30 16 33 H 0.04 0.91 7.99 -51.67 -0.41 0.49 16 34 H 0.06 0.81 8.17 -51.71 -0.42 0.39 16 35 H 0.06 1.26 8.17 -51.76 -0.42 0.84 16 36 H 0.08 0.88 7.82 -51.79 -0.40 0.48 16 37 H 0.06 0.71 8.16 -51.78 -0.42 0.29 16 38 H 0.08 1.12 6.38 -51.95 -0.33 0.79 16 39 H 0.07 0.72 8.17 -51.75 -0.42 0.30 16 40 H 0.10 2.29 3.66 -51.82 -0.19 2.10 16 41 H 0.04 0.92 7.94 -51.82 -0.41 0.51 16 42 H 0.20 3.27 1.84 -52.49 -0.10 3.17 16 43 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.19 2.08 8.06 -52.48 -0.42 1.65 16 46 H 0.16 2.92 7.18 -52.48 -0.38 2.54 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -32.69 351.24 -9.11 -41.80 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.71 Total: 5.80 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.86 Total: 1.04 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.12 Total: -58.43 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.69 -9.11 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039399362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.951 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds