Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48503 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46861 * 299.99672 * 3 2 1 6 6 H 1.48496 * 109.47160 * 59.99982 * 3 2 1 7 7 C 1.38813 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99671 * 191.34608 * 7 2 1 9 9 N 1.37116 * 119.99783 * 11.34918 * 7 2 1 10 10 C 1.44776 * 120.00343 * 206.31843 * 9 7 2 11 11 C 1.51384 * 113.05804 * 266.90973 * 10 9 7 12 12 C 1.50928 * 114.59721 * 295.27552 * 11 10 9 13 13 H 1.09853 * 110.73975 * 178.99682 * 12 11 10 14 14 C 1.54264 * 108.97485 * 300.98064 * 12 11 10 15 15 C 1.54089 * 104.45239 * 90.59209 * 14 12 11 16 16 C 1.52102 * 105.45014 * 13.79513 * 15 14 12 17 17 H 1.09540 * 108.08341 * 121.65677 * 16 15 14 18 18 C 1.49213 * 120.04365 * 25.99667 * 9 7 2 19 19 N 1.47848 * 109.36741 * 4.36137 * 16 15 14 20 20 C 1.34890 * 127.24514 * 158.04347 * 19 16 15 21 21 O 1.21600 * 119.99451 * 177.98429 * 20 19 16 22 22 C 1.47468 * 119.99945 * 357.98821 * 20 19 16 23 23 C 1.39002 * 120.29625 * 9.89831 * 22 20 19 24 24 C 1.38506 * 120.35868 * 179.67844 * 23 22 20 25 25 C 1.37824 * 120.79222 * 0.62403 * 24 23 22 26 26 C 1.39214 * 120.20218 * 359.67535 * 25 24 23 27 27 N 1.37222 * 133.65530 * 180.02562 * 26 25 24 28 28 H 0.96994 * 125.98131 * 359.97438 * 27 26 25 29 29 N 1.40023 * 108.03227 * 179.97438 * 27 26 25 30 30 C 1.30263 * 109.70898 * 359.97438 * 29 27 26 31 31 C 1.40683 * 119.78450 * 0.02562 * 26 25 24 32 32 H 0.96994 * 119.99929 * 0.02562 * 1 2 3 33 33 H 1.08782 * 109.43449 * 144.65410 * 10 9 7 34 34 H 1.09457 * 108.31611 * 27.08654 * 10 9 7 35 35 H 1.09370 * 108.45237 * 173.78765 * 11 10 9 36 36 H 1.09301 * 108.57789 * 57.10552 * 11 10 9 37 37 H 1.09257 * 110.64486 * 331.57411 * 14 12 11 38 38 H 1.09257 * 110.60917 * 209.54215 * 14 12 11 39 39 H 1.08971 * 110.76963 * 254.07774 * 15 14 12 40 40 H 1.09312 * 110.17712 * 132.53014 * 15 14 12 41 41 H 1.09196 * 109.48004 * 16.58315 * 18 9 7 42 42 H 1.09186 * 109.48636 * 257.24367 * 18 9 7 43 43 H 1.08000 * 119.81876 * 359.97438 * 23 22 20 44 44 H 1.08002 * 119.60119 * 180.29860 * 24 23 22 45 45 H 1.08008 * 119.89745 * 179.70241 * 25 24 23 46 46 H 1.07995 * 125.65342 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0745 -1.2111 0.1846 9 7 1.3448 -2.3781 -0.2326 10 6 1.8624 -3.6208 0.3001 11 6 2.7581 -4.3560 -0.6740 12 6 2.0638 -4.8396 -1.9238 13 1 2.7734 -5.3467 -2.5916 14 6 0.9166 -5.7904 -1.5242 15 6 -0.3092 -4.8698 -1.3680 16 6 0.0916 -3.5494 -2.0079 17 1 -0.6217 -3.3298 -2.8097 18 6 0.0831 -2.3772 -1.0292 19 7 1.4325 -3.6861 -2.6155 20 6 1.9652 -2.9290 -3.5967 21 8 3.1023 -3.1360 -3.9748 22 6 1.1687 -1.8505 -4.2107 23 6 -0.0469 -1.4719 -3.6528 24 6 -0.7929 -0.4546 -4.2246 25 6 -0.3527 0.1906 -5.3602 26 6 0.8576 -0.1701 -5.9459 27 7 1.5458 0.2722 -7.0476 28 1 1.2639 0.9781 -7.6501 29 7 2.7263 -0.4740 -7.1496 30 6 2.7866 -1.3362 -6.1750 31 6 1.6316 -1.1970 -5.3752 32 1 -0.4850 0.8400 -0.0004 33 1 1.0339 -4.2647 0.5868 34 1 2.4427 -3.3940 1.2001 35 1 3.1932 -5.2184 -0.1610 36 1 3.5784 -3.6932 -0.9612 37 1 1.1430 -6.2920 -0.5804 38 1 0.7416 -6.5322 -2.3071 39 1 -0.5541 -4.7278 -0.3158 40 1 -1.1691 -5.2948 -1.8922 41 1 0.0013 -1.4383 -1.5807 42 1 -0.7722 -2.4685 -0.3568 43 1 -0.4093 -1.9704 -2.7659 44 1 -1.7333 -0.1670 -3.7782 45 1 -0.9484 0.9787 -5.7967 46 1 3.5872 -2.0412 -6.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039414410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 133.231250 kcal Electronic energy + Delta-G solvation = -31822.876830 eV Core-core repulsion = 27909.460489 eV Total energy + Delta-G solvation = -3913.416342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34971 -40.26464 -37.64851 -36.71107 -34.65032 -33.26265 -32.07169 -31.25824 -31.12854 -29.70494 -29.02013 -27.22032 -25.83090 -24.11971 -23.60155 -22.25580 -22.04026 -21.26098 -20.72533 -19.45025 -18.71788 -17.77537 -16.89171 -16.37106 -15.90373 -15.52318 -15.16562 -14.91094 -14.73484 -14.56692 -14.25076 -14.05882 -13.51370 -13.46941 -13.20990 -13.10783 -12.80801 -12.55330 -12.23710 -11.82300 -11.71776 -11.51981 -11.50118 -11.23987 -11.20119 -10.87987 -10.77528 -10.71123 -10.56315 -10.30327 -10.12494 -10.04434 -9.94351 -9.71601 -9.42106 -9.28321 -8.52651 -8.38962 -8.04047 -7.73125 -6.72679 -5.82912 -3.23185 0.80340 1.68986 2.74409 2.87474 3.29212 3.36398 3.44188 3.44821 3.48574 4.22682 4.47140 4.65755 4.87295 4.90664 4.98102 5.11636 5.15322 5.23105 5.32827 5.39862 5.43322 5.48508 5.63475 5.68535 5.70067 5.85407 5.89752 5.97556 6.03449 6.08586 6.12159 6.19781 6.29239 6.42656 6.46651 6.52542 6.56385 6.63955 6.69089 6.78845 6.82333 6.98802 7.01347 7.22225 7.39498 7.42941 7.74815 7.78891 8.12239 8.40453 8.71470 9.17283 9.82637 10.32913 11.26706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.006452 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.175864 B = 4338.584037 C = 5797.463636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.007 3.993 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.064 0.936 9 N -0.580 5.580 10 C 0.157 3.843 11 C -0.154 4.154 12 C 0.147 3.853 13 H 0.080 0.920 14 C -0.125 4.125 15 C -0.120 4.120 16 C 0.082 3.918 17 H 0.078 0.922 18 C 0.137 3.863 19 N -0.580 5.580 20 C 0.589 3.411 21 O -0.552 6.552 22 C -0.046 4.046 23 C -0.153 4.153 24 C -0.069 4.069 25 C -0.129 4.129 26 C 0.114 3.886 27 N -0.514 5.514 28 H 0.438 0.562 29 N -0.263 5.263 30 C 0.091 3.909 31 C -0.133 4.133 32 H 0.252 0.748 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.041 0.959 43 H 0.192 0.808 44 H 0.136 0.864 45 H 0.124 0.876 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -7.092 -7.477 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.302 5.302 10 C 0.029 3.971 11 C -0.195 4.195 12 C 0.044 3.956 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.023 4.023 17 H 0.096 0.904 18 C 0.012 3.988 19 N -0.311 5.311 20 C 0.379 3.621 21 O -0.432 6.432 22 C -0.052 4.052 23 C -0.171 4.171 24 C -0.090 4.090 25 C -0.151 4.151 26 C -0.002 4.002 27 N -0.229 5.229 28 H 0.282 0.718 29 N -0.078 5.078 30 C -0.104 4.104 31 C -0.142 4.142 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.059 0.941 43 H 0.208 0.792 44 H 0.154 0.846 45 H 0.142 0.858 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.816 -6.527 -8.795 11.598 hybrid contribution -0.036 1.280 0.428 1.351 sum -3.852 -5.247 -8.367 10.601 Atomic orbital electron populations 1.69925 1.04890 1.25185 1.55599 1.24892 0.95402 0.97861 1.00922 0.86304 0.79587 0.84313 0.77211 1.20371 1.21612 1.21687 1.19233 0.91182 0.84107 1.42505 0.91833 1.43812 1.25815 1.02104 1.58447 1.20008 0.95287 0.88202 0.93625 1.22023 1.00702 1.00101 0.96676 1.21536 0.94666 0.85901 0.93451 0.90182 1.22506 0.94929 0.97147 1.01744 1.22094 0.97474 0.94122 1.02151 1.22768 0.84209 0.98068 0.97266 0.90434 1.22244 0.89231 0.95496 0.91853 1.48537 1.16603 1.31145 1.34810 1.17502 0.85708 0.80647 0.78222 1.90671 1.18181 1.70318 1.64052 1.19322 0.95046 0.96689 0.94172 1.23336 0.93918 0.98277 1.01615 1.21017 0.99834 0.94541 0.93610 1.20188 0.94253 1.02596 0.98091 1.18757 0.94976 0.96292 0.90211 1.45980 1.17119 1.35000 1.24834 0.71812 1.76703 1.01796 1.06947 1.22373 1.24119 0.98011 0.97346 0.90917 1.18647 0.96747 1.00180 0.98585 0.93732 0.94802 0.93752 0.92569 0.92133 0.90174 0.91677 0.89836 0.91374 0.86768 0.94078 0.79189 0.84636 0.85765 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.16 10.84 55.49 0.60 -23.56 16 2 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 3 Si 0.90 21.95 29.57 -169.99 -5.03 16.92 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.37 9.59 -14.98 -0.14 -6.52 16 8 H 0.06 1.75 7.85 -52.48 -0.41 1.33 16 9 N -0.58 -13.31 2.66 -173.18 -0.46 -13.77 16 10 C 0.16 3.03 5.24 -5.78 -0.03 3.00 16 11 C -0.15 -2.67 5.03 -28.59 -0.14 -2.82 16 12 C 0.15 2.39 3.51 -67.16 -0.24 2.15 16 13 H 0.08 1.30 8.09 -51.44 -0.42 0.89 16 14 C -0.12 -1.57 6.05 -25.50 -0.15 -1.72 16 15 C -0.12 -1.59 5.73 -26.62 -0.15 -1.75 16 16 C 0.08 1.35 2.20 -67.80 -0.15 1.20 16 17 H 0.08 1.18 5.62 -51.62 -0.29 0.89 16 18 C 0.14 2.82 3.76 -2.68 -0.01 2.81 16 19 N -0.58 -10.61 2.38 -157.73 -0.38 -10.99 16 20 C 0.59 12.07 7.82 -12.45 -0.10 11.97 16 21 O -0.55 -12.28 15.37 5.28 0.08 -12.20 16 22 C -0.05 -0.90 5.90 -104.68 -0.62 -1.52 16 23 C -0.15 -2.71 6.95 -39.20 -0.27 -2.98 16 24 C -0.07 -1.06 9.99 -39.63 -0.40 -1.45 16 25 C -0.13 -1.86 10.06 -39.37 -0.40 -2.26 16 26 C 0.11 1.86 7.32 -84.17 -0.62 1.24 16 27 N -0.51 -7.51 7.45 32.35 0.24 -7.27 16 28 H 0.44 4.70 8.96 -182.66 -1.64 3.07 16 29 N -0.26 -4.40 12.58 30.81 0.39 -4.02 16 30 C 0.09 1.63 11.25 -17.10 -0.19 1.43 16 31 C -0.13 -2.48 5.99 -106.68 -0.64 -3.12 16 32 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.03 0.59 5.55 -52.05 -0.29 0.30 16 34 H 0.04 0.89 7.99 -51.67 -0.41 0.48 16 35 H 0.06 0.81 8.17 -51.72 -0.42 0.39 16 36 H 0.06 1.25 8.17 -51.76 -0.42 0.83 16 37 H 0.08 0.89 7.82 -51.78 -0.40 0.49 16 38 H 0.06 0.72 8.16 -51.78 -0.42 0.30 16 39 H 0.08 1.14 6.39 -51.95 -0.33 0.81 16 40 H 0.07 0.74 8.17 -51.75 -0.42 0.32 16 41 H 0.12 2.59 3.29 -51.82 -0.17 2.42 16 42 H 0.04 0.89 7.95 -51.82 -0.41 0.48 16 43 H 0.19 3.39 1.60 -52.49 -0.08 3.30 16 44 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 45 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 46 H 0.20 3.40 7.01 -52.49 -0.37 3.03 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.51 348.80 -10.53 -42.04 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.90 Total: 7.80 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -4.33 Total: -0.22 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.39 Total: -59.60 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.51 -10.53 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039414410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.270 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds