Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48503 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46861 * 299.99672 * 3 2 1 6 6 H 1.48496 * 109.47160 * 59.99982 * 3 2 1 7 7 C 1.38813 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99671 * 191.34608 * 7 2 1 9 9 N 1.37116 * 119.99783 * 11.34918 * 7 2 1 10 10 C 1.44776 * 120.00343 * 206.31843 * 9 7 2 11 11 C 1.51384 * 113.05804 * 266.90973 * 10 9 7 12 12 C 1.50928 * 114.59721 * 295.27552 * 11 10 9 13 13 H 1.09853 * 110.73975 * 178.99682 * 12 11 10 14 14 C 1.54264 * 108.97485 * 300.98064 * 12 11 10 15 15 C 1.54089 * 104.45239 * 90.59209 * 14 12 11 16 16 C 1.52102 * 105.45014 * 13.79513 * 15 14 12 17 17 H 1.09540 * 108.08341 * 121.65677 * 16 15 14 18 18 C 1.49213 * 120.04365 * 25.99667 * 9 7 2 19 19 N 1.47848 * 109.36741 * 4.36137 * 16 15 14 20 20 C 1.34890 * 127.24514 * 158.04347 * 19 16 15 21 21 O 1.21600 * 119.99451 * 177.98429 * 20 19 16 22 22 C 1.47468 * 119.99945 * 357.98821 * 20 19 16 23 23 C 1.39002 * 120.29625 * 9.89831 * 22 20 19 24 24 C 1.38506 * 120.35868 * 179.67844 * 23 22 20 25 25 C 1.37824 * 120.79222 * 0.62403 * 24 23 22 26 26 C 1.39214 * 120.20218 * 359.67535 * 25 24 23 27 27 N 1.37222 * 133.65530 * 180.02562 * 26 25 24 28 28 H 0.96994 * 125.98131 * 359.97438 * 27 26 25 29 29 N 1.40023 * 108.03227 * 179.97438 * 27 26 25 30 30 C 1.30263 * 109.70898 * 359.97438 * 29 27 26 31 31 C 1.40683 * 119.78450 * 0.02562 * 26 25 24 32 32 H 0.96994 * 119.99929 * 0.02562 * 1 2 3 33 33 H 1.08782 * 109.43449 * 144.65410 * 10 9 7 34 34 H 1.09457 * 108.31611 * 27.08654 * 10 9 7 35 35 H 1.09370 * 108.45237 * 173.78765 * 11 10 9 36 36 H 1.09301 * 108.57789 * 57.10552 * 11 10 9 37 37 H 1.09257 * 110.64486 * 331.57411 * 14 12 11 38 38 H 1.09257 * 110.60917 * 209.54215 * 14 12 11 39 39 H 1.08971 * 110.76963 * 254.07774 * 15 14 12 40 40 H 1.09312 * 110.17712 * 132.53014 * 15 14 12 41 41 H 1.09196 * 109.48004 * 16.58315 * 18 9 7 42 42 H 1.09186 * 109.48636 * 257.24367 * 18 9 7 43 43 H 1.08000 * 119.81876 * 359.97438 * 23 22 20 44 44 H 1.08002 * 119.60119 * 180.29860 * 24 23 22 45 45 H 1.08008 * 119.89745 * 179.70241 * 25 24 23 46 46 H 1.07995 * 125.65342 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0745 -1.2111 0.1846 9 7 1.3448 -2.3781 -0.2326 10 6 1.8624 -3.6208 0.3001 11 6 2.7581 -4.3560 -0.6740 12 6 2.0638 -4.8396 -1.9238 13 1 2.7734 -5.3467 -2.5916 14 6 0.9166 -5.7904 -1.5242 15 6 -0.3092 -4.8698 -1.3680 16 6 0.0916 -3.5494 -2.0079 17 1 -0.6217 -3.3298 -2.8097 18 6 0.0831 -2.3772 -1.0292 19 7 1.4325 -3.6861 -2.6155 20 6 1.9652 -2.9290 -3.5967 21 8 3.1023 -3.1360 -3.9748 22 6 1.1687 -1.8505 -4.2107 23 6 -0.0469 -1.4719 -3.6528 24 6 -0.7929 -0.4546 -4.2246 25 6 -0.3527 0.1906 -5.3602 26 6 0.8576 -0.1701 -5.9459 27 7 1.5458 0.2722 -7.0476 28 1 1.2639 0.9781 -7.6501 29 7 2.7263 -0.4740 -7.1496 30 6 2.7866 -1.3362 -6.1750 31 6 1.6316 -1.1970 -5.3752 32 1 -0.4850 0.8400 -0.0004 33 1 1.0339 -4.2647 0.5868 34 1 2.4427 -3.3940 1.2001 35 1 3.1932 -5.2184 -0.1610 36 1 3.5784 -3.6932 -0.9612 37 1 1.1430 -6.2920 -0.5804 38 1 0.7416 -6.5322 -2.3071 39 1 -0.5541 -4.7278 -0.3158 40 1 -1.1691 -5.2948 -1.8922 41 1 0.0013 -1.4383 -1.5807 42 1 -0.7722 -2.4685 -0.3568 43 1 -0.4093 -1.9704 -2.7659 44 1 -1.7333 -0.1670 -3.7782 45 1 -0.9484 0.9787 -5.7967 46 1 3.5872 -2.0412 -6.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039414410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 114.101812 kcal Electronic energy + Delta-G solvation = -31823.706345 eV Core-core repulsion = 27909.460489 eV Total energy + Delta-G solvation = -3914.245856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65107 -41.62340 -39.12308 -38.02845 -36.37008 -34.66438 -33.44920 -32.93413 -32.53080 -30.98034 -30.34584 -28.82056 -27.26240 -25.81619 -25.02629 -23.52348 -23.38542 -22.56969 -22.09748 -20.97605 -20.08042 -19.24152 -18.18955 -18.06867 -17.30261 -17.10750 -16.64784 -16.22017 -16.18112 -15.92924 -15.65869 -15.52975 -15.19289 -14.87891 -14.73785 -14.38154 -14.17730 -14.04674 -13.60710 -13.31872 -13.12692 -12.91551 -12.86384 -12.78780 -12.69606 -12.56083 -12.37220 -12.12923 -12.07670 -11.86498 -11.65677 -11.54796 -11.33928 -11.28031 -10.86725 -10.71687 -10.44814 -9.71460 -9.48014 -9.01109 -8.58916 -7.84109 -5.23490 -0.51160 0.40135 1.36949 1.38709 1.41970 1.48864 1.71007 1.88908 2.08474 2.49382 2.86801 3.27002 3.39362 3.62650 3.65674 3.74900 3.84771 3.88988 4.00041 4.12114 4.13676 4.22855 4.29297 4.32898 4.50056 4.57639 4.65090 4.70901 4.75959 4.83629 4.88659 5.01104 5.07486 5.12235 5.16072 5.23786 5.25532 5.29122 5.36707 5.41677 5.43855 5.57986 5.64088 5.71950 5.75724 5.76897 6.28591 6.44239 6.52310 6.68549 7.22386 7.22954 7.95912 8.39228 9.21813 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.006452 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.175864 B = 4338.584037 C = 5797.463636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.026 4.026 3 Si 0.934 3.066 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.040 0.960 9 N -0.595 5.595 10 C 0.154 3.846 11 C -0.143 4.143 12 C 0.137 3.863 13 H 0.076 0.924 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.084 3.916 17 H 0.094 0.906 18 C 0.142 3.858 19 N -0.582 5.582 20 C 0.575 3.425 21 O -0.587 6.587 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.077 4.077 25 C -0.111 4.111 26 C 0.108 3.892 27 N -0.495 5.495 28 H 0.456 0.544 29 N -0.266 5.266 30 C 0.074 3.926 31 C -0.161 4.161 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.014 0.986 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.031 0.969 43 H 0.189 0.811 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -7.788 -7.983 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.057 0.943 9 N -0.317 5.317 10 C 0.027 3.973 11 C -0.183 4.183 12 C 0.034 3.966 13 H 0.094 0.906 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.020 4.020 17 H 0.112 0.888 18 C 0.017 3.983 19 N -0.312 5.312 20 C 0.366 3.634 21 O -0.470 6.470 22 C -0.084 4.084 23 C -0.174 4.174 24 C -0.098 4.098 25 C -0.133 4.133 26 C -0.010 4.010 27 N -0.213 5.213 28 H 0.304 0.696 29 N -0.081 5.081 30 C -0.121 4.121 31 C -0.170 4.170 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.182 0.818 45 H 0.185 0.815 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.266 -7.242 -9.296 13.346 hybrid contribution 0.734 1.544 0.581 1.805 sum -5.532 -5.698 -8.715 11.791 Atomic orbital electron populations 1.69994 1.04936 1.25268 1.56006 1.25237 0.96111 0.99196 1.01654 0.85707 0.78246 0.82514 0.77009 1.21488 1.21979 1.21111 1.19220 0.90487 0.86031 1.42320 0.94260 1.43990 1.26301 1.02116 1.59326 1.20146 0.96178 0.87547 0.93386 1.21903 0.98988 1.00173 0.97284 1.21777 0.96307 0.86134 0.92362 0.90602 1.22498 0.92395 0.96397 1.03673 1.22126 0.98898 0.92129 1.02220 1.22739 0.83844 0.98597 0.96790 0.88828 1.22137 0.87637 0.96634 0.91878 1.48682 1.17342 1.31079 1.34076 1.17919 0.85615 0.81139 0.78738 1.90625 1.19552 1.71437 1.65398 1.19390 0.96088 0.97601 0.95339 1.23412 0.93592 0.98940 1.01417 1.21387 1.00678 0.93812 0.93897 1.20649 0.93265 1.02362 0.96992 1.19005 0.95560 0.95896 0.90498 1.45971 1.16088 1.34723 1.24553 0.69614 1.76630 1.02687 1.06861 1.21968 1.24064 0.98317 0.98078 0.91620 1.18919 0.97596 1.01409 0.99062 0.93830 0.91930 0.95400 0.89108 0.96723 0.87899 0.89289 0.89877 0.87976 0.88829 0.95108 0.79531 0.81772 0.81460 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 10.84 21.65 0.23 -48.40 16 2 C -0.03 -1.38 5.06 84.86 0.43 -0.95 16 3 Si 0.93 45.75 29.57 68.60 2.03 47.78 16 4 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.25 -13.64 9.59 84.00 0.81 -12.84 16 8 H 0.04 2.28 7.85 -2.91 -0.02 2.26 16 9 N -0.59 -27.64 2.66 -701.81 -1.86 -29.50 16 10 C 0.15 5.93 5.24 86.17 0.45 6.38 16 11 C -0.14 -4.93 5.03 29.39 0.15 -4.78 16 12 C 0.14 4.28 3.51 44.34 0.16 4.44 16 13 H 0.08 2.44 8.09 -1.93 -0.02 2.43 16 14 C -0.11 -2.38 6.05 31.39 0.19 -2.19 16 15 C -0.12 -2.65 5.73 30.67 0.18 -2.47 16 16 C 0.08 2.68 2.20 44.34 0.10 2.77 16 17 H 0.09 2.70 5.62 -2.10 -0.01 2.69 16 18 C 0.14 5.80 3.76 85.76 0.32 6.12 16 19 N -0.58 -21.28 2.38 -771.14 -1.84 -23.12 16 20 C 0.57 24.42 7.82 86.66 0.68 25.10 16 21 O -0.59 -27.68 15.37 -4.03 -0.06 -27.74 16 22 C -0.08 -3.10 5.90 -19.90 -0.12 -3.21 16 23 C -0.16 -5.41 6.95 22.52 0.16 -5.25 16 24 C -0.08 -2.19 9.99 22.24 0.22 -1.97 16 25 C -0.11 -2.87 10.06 22.41 0.23 -2.64 16 26 C 0.11 3.36 7.32 39.13 0.29 3.65 16 27 N -0.50 -13.70 7.45 -51.56 -0.38 -14.08 16 28 H 0.46 8.67 8.96 -213.38 -1.91 6.75 16 29 N -0.27 -8.85 12.58 -56.45 -0.71 -9.56 16 30 C 0.07 2.72 11.25 85.65 0.96 3.68 16 31 C -0.16 -6.11 5.99 -21.20 -0.13 -6.24 16 32 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 33 H 0.06 2.05 5.55 -2.50 -0.01 2.04 16 34 H 0.03 1.14 7.99 -2.14 -0.02 1.12 16 35 H 0.09 2.47 8.17 -2.19 -0.02 2.46 16 36 H 0.01 0.61 8.17 -2.23 -0.02 0.59 16 37 H 0.10 1.79 7.82 -2.25 -0.02 1.77 16 38 H 0.09 1.55 8.16 -2.25 -0.02 1.53 16 39 H 0.08 1.95 6.39 -2.40 -0.02 1.94 16 40 H 0.10 1.72 8.17 -2.22 -0.02 1.70 16 41 H 0.09 4.25 3.29 -2.28 -0.01 4.24 16 42 H 0.03 1.31 7.95 -2.29 -0.02 1.29 16 43 H 0.19 6.54 1.60 -2.91 0.00 6.54 16 44 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 46 H 0.19 7.11 7.01 -2.91 -0.02 7.09 16 Total: -1.00 -71.87 348.80 1.62 -70.25 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.85 Total: 24.79 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.06 Total: 9.59 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -4.56 Total: -124.67 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.87 1.62 -70.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039414410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.353 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds