Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48503 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47257 * 300.00225 * 3 2 1 6 6 H 1.48505 * 109.46968 * 60.00346 * 3 2 1 7 7 C 1.38816 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99881 * 197.55830 * 7 2 1 9 9 N 1.37142 * 120.00251 * 17.56078 * 7 2 1 10 10 C 1.44781 * 119.94257 * 204.43389 * 9 7 2 11 11 C 1.51456 * 113.00363 * 267.32761 * 10 9 7 12 12 C 1.51230 * 114.05866 * 294.64762 * 11 10 9 13 13 H 1.09671 * 110.75695 * 179.84679 * 12 11 10 14 14 C 1.54147 * 108.43752 * 301.86811 * 12 11 10 15 15 C 1.53999 * 104.77877 * 92.37631 * 14 12 11 16 16 C 1.52096 * 105.53766 * 11.61957 * 15 14 12 17 17 H 1.09457 * 108.20356 * 123.07703 * 16 15 14 18 18 C 1.49253 * 120.00354 * 24.10720 * 9 7 2 19 19 N 1.47719 * 109.50949 * 5.40498 * 16 15 14 20 20 C 1.34983 * 127.17643 * 158.58048 * 19 16 15 21 21 O 1.21592 * 120.00251 * 184.45885 * 20 19 16 22 22 C 1.47573 * 119.99811 * 4.45677 * 20 19 16 23 23 C 1.41757 * 120.01370 * 313.07413 * 22 20 19 24 24 C 1.35630 * 119.54077 * 179.97438 * 23 22 20 25 25 C 1.41171 * 119.50790 * 359.97438 * 24 23 22 26 26 N 1.32421 * 132.11524 * 180.02562 * 25 24 23 27 27 C 1.33600 * 109.22379 * 179.97438 * 26 25 24 28 28 C 1.35001 * 108.65643 * 359.97438 * 27 26 25 29 29 N 1.37004 * 107.14621 * 359.97438 * 28 27 26 30 30 C 1.35919 * 132.41915 * 180.28061 * 29 28 27 31 31 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 32 32 H 1.09357 * 108.43022 * 27.66484 * 10 9 7 33 33 H 1.08840 * 109.28971 * 145.32396 * 10 9 7 34 34 H 1.09157 * 108.71937 * 56.21760 * 11 10 9 35 35 H 1.09265 * 108.55014 * 173.44976 * 11 10 9 36 36 H 1.09345 * 110.59111 * 211.45453 * 14 12 11 37 37 H 1.09291 * 110.67503 * 333.15444 * 14 12 11 38 38 H 1.09051 * 110.67399 * 252.01073 * 15 14 12 39 39 H 1.09290 * 110.26031 * 130.53085 * 15 14 12 40 40 H 1.09167 * 109.49766 * 16.36622 * 18 9 7 41 41 H 1.09160 * 109.52020 * 256.85074 * 18 9 7 42 42 H 1.07999 * 120.23141 * 359.97119 * 23 22 20 43 43 H 1.08007 * 120.24428 * 180.02562 * 24 23 22 44 44 H 1.07992 * 125.67302 * 179.97438 * 27 26 25 45 45 H 1.08000 * 126.42650 * 180.02562 * 28 27 26 46 46 H 1.07999 * 119.75759 * 359.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0526 -1.2241 0.2816 9 7 1.3726 -2.3621 -0.3594 10 6 1.8671 -3.6362 0.1183 11 6 2.8401 -4.2905 -0.8403 12 6 2.2257 -4.6957 -2.1615 13 1 2.9760 -5.1599 -2.8129 14 6 1.0617 -5.6664 -1.8805 15 6 -0.1852 -4.7677 -1.7855 16 6 0.2549 -3.4049 -2.2978 17 1 -0.3964 -3.1266 -3.1323 18 6 0.1655 -2.3097 -1.2357 19 7 1.6399 -3.4919 -2.8042 20 6 2.2431 -2.6575 -3.6772 21 8 3.3686 -2.8980 -4.0694 22 6 1.5365 -1.4535 -4.1555 23 6 0.1939 -1.5489 -4.6001 24 6 -0.4465 -0.4361 -5.0372 25 6 0.2338 0.8009 -5.0423 26 7 -0.1392 2.0180 -5.4068 27 6 0.8775 2.8643 -5.2196 28 6 1.9269 2.1753 -4.7230 29 7 1.5328 0.8685 -4.6051 30 6 2.1728 -0.2457 -4.1620 31 1 -0.4849 0.8400 -0.0004 32 1 2.3759 -3.4738 1.0726 33 1 1.0268 -4.3057 0.2921 34 1 3.6617 -3.5980 -1.0325 35 1 3.2544 -5.1809 -0.3613 36 1 0.9545 -6.3850 -2.6977 37 1 1.2230 -6.2005 -0.9407 38 1 -0.5299 -4.6953 -0.7535 39 1 -0.9866 -5.1648 -2.4135 40 1 0.1093 -1.3332 -1.7205 41 1 -0.7310 -2.4592 -0.6310 42 1 -0.3156 -2.5012 -4.5908 43 1 -1.4696 -0.4957 -5.3781 44 1 0.8624 3.9233 -5.4303 45 1 2.8952 2.5788 -4.4662 46 1 3.1941 -0.1761 -3.8178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039458129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 103.044066 kcal Electronic energy + Delta-G solvation = -31893.692477 eV Core-core repulsion = 27978.967121 eV Total energy + Delta-G solvation = -3914.725356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58809 -40.35256 -38.11118 -36.60351 -34.68034 -33.63466 -32.73296 -31.41599 -31.12329 -30.00853 -28.60893 -27.13620 -25.69100 -24.29831 -24.00439 -23.00690 -21.74697 -21.45776 -21.01231 -19.47673 -18.72518 -17.93618 -17.22106 -16.51261 -15.98883 -15.67169 -15.63550 -15.42478 -15.00021 -14.44928 -14.28148 -14.18200 -13.65113 -13.49844 -13.38477 -13.26319 -13.15790 -12.88325 -12.54607 -12.21598 -11.83558 -11.74569 -11.57883 -11.44062 -11.24976 -11.01529 -10.92260 -10.79958 -10.72888 -10.48051 -10.17883 -10.11340 -9.99159 -9.85659 -9.66283 -9.45295 -8.66454 -8.53759 -8.11153 -7.67917 -6.79986 -5.87817 -3.24965 0.88647 1.31472 2.59498 2.84176 3.20857 3.27513 3.37006 3.38747 3.41831 3.82135 4.35871 4.41786 4.57324 4.74189 4.82992 4.89195 4.93392 5.08882 5.12243 5.29223 5.35436 5.45721 5.55016 5.56475 5.60886 5.62478 5.65576 5.84423 5.95234 5.99446 6.01839 6.09001 6.16445 6.21450 6.30610 6.37290 6.41275 6.51129 6.58123 6.68747 6.75538 6.76976 6.94110 7.17442 7.21579 7.42226 7.73557 7.97075 8.01216 8.34535 8.48513 9.11722 9.79343 10.29722 11.21611 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.006297 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.067651 B = 4445.467464 C = 5731.660654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.157 3.843 11 C -0.154 4.154 12 C 0.146 3.854 13 H 0.082 0.918 14 C -0.124 4.124 15 C -0.120 4.120 16 C 0.094 3.906 17 H 0.069 0.931 18 C 0.167 3.833 19 N -0.576 5.576 20 C 0.603 3.397 21 O -0.552 6.552 22 C -0.132 4.132 23 C -0.076 4.076 24 C -0.084 4.084 25 C 0.235 3.765 26 N -0.498 5.498 27 C 0.029 3.971 28 C -0.095 4.095 29 N -0.360 5.360 30 C 0.129 3.871 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.179 0.821 45 H 0.180 0.820 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -6.661 -7.515 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.305 5.305 10 C 0.029 3.971 11 C -0.195 4.195 12 C 0.043 3.957 13 H 0.100 0.900 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.010 4.010 17 H 0.087 0.913 18 C 0.042 3.958 19 N -0.307 5.307 20 C 0.391 3.609 21 O -0.431 6.431 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.008 4.008 26 N -0.217 5.217 27 C -0.122 4.122 28 C -0.225 4.225 29 N -0.031 5.031 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.196 0.804 45 H 0.197 0.803 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.733 -6.280 -8.057 10.241 hybrid contribution 1.327 0.983 0.612 1.762 sum 0.594 -5.296 -7.445 9.156 Atomic orbital electron populations 1.70000 1.04971 1.25257 1.54178 1.24828 0.95133 0.97801 1.01183 0.86514 0.79584 0.84948 0.77745 1.20311 1.21348 1.21541 1.19173 0.92869 0.85068 1.40696 0.91865 1.43905 1.31285 1.00857 1.54434 1.20002 0.94902 0.88074 0.94163 1.22100 1.01040 1.00273 0.96103 1.21582 0.95307 0.84813 0.93958 0.89996 1.22478 0.94563 0.97096 1.02119 1.22078 0.97244 0.93909 1.02591 1.22500 0.82177 0.97628 0.98712 0.91311 1.21598 0.89178 0.95757 0.89294 1.48495 1.14211 1.26250 1.41769 1.17044 0.84701 0.81394 0.77761 1.90763 1.18781 1.74605 1.58995 1.19132 0.95450 0.93366 1.05849 1.21093 0.92594 0.99284 0.96979 1.20056 1.00562 0.87561 1.02203 1.21058 0.82721 0.95490 1.01580 1.70690 1.28774 0.97986 1.24296 1.22427 0.88801 0.99812 1.01111 1.22689 1.03552 0.81602 1.14649 1.42678 1.12795 1.07430 1.40188 1.21397 0.98596 0.83711 0.95876 0.93733 0.93834 0.94832 0.92252 0.92464 0.91663 0.90108 0.89886 0.91391 0.89826 0.94579 0.83554 0.82902 0.80361 0.80269 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 11.10 55.49 0.62 -24.29 16 2 C 0.01 0.24 4.92 -17.43 -0.09 0.16 16 3 Si 0.88 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -6.48 9.57 -14.96 -0.14 -6.62 16 8 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 9 N -0.58 -13.24 2.64 -173.07 -0.46 -13.69 16 10 C 0.16 2.98 5.25 -5.74 -0.03 2.95 16 11 C -0.15 -2.57 5.03 -28.40 -0.14 -2.72 16 12 C 0.15 2.25 3.58 -67.12 -0.24 2.01 16 13 H 0.08 1.27 8.04 -51.55 -0.41 0.85 16 14 C -0.12 -1.49 5.98 -25.61 -0.15 -1.65 16 15 C -0.12 -1.56 5.73 -26.67 -0.15 -1.71 16 16 C 0.09 1.53 2.35 -67.81 -0.16 1.37 16 17 H 0.07 1.00 4.72 -51.67 -0.24 0.76 16 18 C 0.17 3.52 4.44 -2.61 -0.01 3.51 16 19 N -0.58 -9.96 2.33 -157.77 -0.37 -10.33 16 20 C 0.60 11.45 7.40 -12.36 -0.09 11.36 16 21 O -0.55 -11.75 17.31 5.29 0.09 -11.65 16 22 C -0.13 -2.35 4.96 -105.37 -0.52 -2.87 16 23 C -0.08 -1.15 8.30 -39.17 -0.33 -1.48 16 24 C -0.08 -1.29 10.09 -39.40 -0.40 -1.69 16 25 C 0.24 4.25 7.81 -155.93 -1.22 3.03 16 26 N -0.50 -9.05 11.31 -12.72 -0.14 -9.20 16 27 C 0.03 0.45 11.82 -17.93 -0.21 0.24 16 28 C -0.09 -1.52 11.75 -16.39 -0.19 -1.71 16 29 N -0.36 -6.47 2.93 -62.31 -0.18 -6.65 16 30 C 0.13 2.35 10.55 -16.36 -0.17 2.18 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 0.87 7.99 -51.73 -0.41 0.46 16 33 H 0.03 0.58 5.44 -52.02 -0.28 0.30 16 34 H 0.06 1.17 8.16 -51.84 -0.42 0.75 16 35 H 0.06 0.80 8.16 -51.78 -0.42 0.37 16 36 H 0.06 0.68 8.17 -51.73 -0.42 0.25 16 37 H 0.08 0.88 7.64 -51.76 -0.40 0.48 16 38 H 0.08 1.14 6.47 -51.90 -0.34 0.80 16 39 H 0.07 0.72 8.17 -51.77 -0.42 0.30 16 40 H 0.08 2.03 6.00 -51.83 -0.31 1.72 16 41 H 0.04 0.82 7.91 -51.84 -0.41 0.41 16 42 H 0.15 1.83 5.96 -52.49 -0.31 1.51 16 43 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 46 H 0.17 2.93 8.06 -52.49 -0.42 2.50 16 LS Contribution 359.33 15.07 5.41 5.41 Total: -1.00 -32.46 359.33 -10.36 -42.82 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.05 Total: 4.76 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -4.25 Total: 6.38 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.53 Total: -64.16 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.46 -10.36 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039458129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.861 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds