Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99855 * 2 1 4 4 H 1.48497 * 109.46989 * 270.00185 * 3 2 1 5 5 H 1.48497 * 109.47115 * 30.00458 * 3 2 1 6 6 H 1.48502 * 109.46769 * 150.00210 * 3 2 1 7 7 C 1.38804 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00121 * 191.05577 * 7 2 1 9 9 N 1.36935 * 120.00228 * 11.05376 * 7 2 1 10 10 C 1.44772 * 120.03696 * 202.73998 * 9 7 2 11 11 C 1.51431 * 112.64496 * 264.18790 * 10 9 7 12 12 C 1.51749 * 112.77819 * 286.01775 * 11 10 9 13 13 H 1.08995 * 112.09319 * 187.27134 * 12 11 10 14 14 C 1.55223 * 103.54231 * 308.33912 * 12 11 10 15 15 C 1.53950 * 105.31729 * 98.09446 * 14 12 11 16 16 C 1.50183 * 105.14733 * 359.77655 * 15 14 12 17 17 H 1.08996 * 104.95528 * 129.80247 * 16 15 14 18 18 C 1.50416 * 120.02928 * 22.75790 * 9 7 2 19 19 N 1.48041 * 109.16628 * 62.58864 * 12 11 10 20 20 C 1.34772 * 127.77781 * 95.37310 * 19 12 11 21 21 O 1.21611 * 120.00382 * 0.02562 * 20 19 12 22 22 C 1.47397 * 119.99632 * 180.02562 * 20 19 12 23 23 N 1.31575 * 126.82586 * 0.02618 * 22 20 19 24 24 N 1.28383 * 111.96563 * 179.97438 * 23 22 20 25 25 H 0.96999 * 124.36958 * 180.02562 * 24 23 22 26 26 C 1.37050 * 111.25822 * 359.97438 * 24 23 22 27 27 C 1.39115 * 134.72613 * 180.02562 * 26 24 23 28 28 C 1.36687 * 119.78880 * 179.97438 * 27 26 24 29 29 C 1.38896 * 120.88997 * 0.02562 * 28 27 26 30 30 C 1.36720 * 120.52353 * 359.97438 * 29 28 27 31 31 C 1.39190 * 119.51177 * 359.77757 * 30 29 28 32 32 H 0.97001 * 119.99883 * 359.97438 * 1 2 3 33 33 H 1.08996 * 108.85445 * 143.37134 * 10 9 7 34 34 H 1.09004 * 108.76423 * 24.94043 * 10 9 7 35 35 H 1.09003 * 108.82319 * 165.15908 * 11 10 9 36 36 H 1.09010 * 108.82101 * 46.86446 * 11 10 9 37 37 H 1.08999 * 110.28800 * 217.08141 * 14 12 11 38 38 H 1.08999 * 110.29258 * 339.10201 * 14 12 11 39 39 H 1.09002 * 110.28395 * 118.69053 * 15 14 12 40 40 H 1.08999 * 110.29174 * 240.80078 * 15 14 12 41 41 H 1.08999 * 109.51999 * 270.48636 * 18 9 7 42 42 H 1.09000 * 109.51837 * 30.66811 * 18 9 7 43 43 H 1.08004 * 120.11169 * 0.02562 * 27 26 24 44 44 H 1.07998 * 119.55540 * 180.02562 * 28 27 26 45 45 H 1.07999 * 119.74218 * 180.02562 * 29 28 27 46 46 H 1.07999 * 120.24383 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0753 -1.2108 0.1788 9 7 1.3447 -2.3769 -0.2284 10 6 1.9038 -3.6286 0.2370 11 6 2.6920 -4.3499 -0.8362 12 6 1.8042 -4.9874 -1.8888 13 1 2.3714 -5.6080 -2.5824 14 6 0.7911 -5.8174 -1.0556 15 6 -0.4691 -4.9389 -0.9550 16 6 -0.1324 -3.6823 -1.7055 17 1 -0.9668 -3.5317 -2.3905 18 6 0.0321 -2.3682 -0.9630 19 7 1.0422 -3.9282 -2.5883 20 6 1.3534 -3.3163 -3.7480 21 8 2.3679 -3.6231 -4.3444 22 6 0.4642 -2.2750 -4.2935 23 7 -0.6590 -1.8403 -3.7638 24 7 -1.2050 -0.9251 -4.4796 25 1 -2.0373 -0.4794 -4.2571 26 6 -0.4595 -0.6582 -5.5982 27 6 -0.5869 0.2139 -6.6746 28 6 0.3670 0.2284 -7.6534 29 6 1.4665 -0.6180 -7.5903 30 6 1.6162 -1.4849 -6.5437 31 6 0.6590 -1.5122 -5.5336 32 1 -0.4850 0.8401 0.0004 33 1 1.0919 -4.2743 0.5715 34 1 2.5627 -3.4258 1.0814 35 1 3.2951 -5.1272 -0.3670 36 1 3.3578 -3.6369 -1.3226 37 1 0.5600 -6.7531 -1.5647 38 1 1.1928 -6.0175 -0.0623 39 1 -1.3179 -5.4411 -1.4194 40 1 -0.6885 -4.7105 0.0879 41 1 -0.7835 -2.2481 -0.2499 42 1 0.0188 -1.5432 -1.6752 43 1 -1.4364 0.8779 -6.7363 44 1 0.2646 0.9073 -8.4871 45 1 2.2093 -0.5907 -8.3737 46 1 2.4731 -2.1408 -6.4989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039466533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 107.376237 kcal Electronic energy + Delta-G solvation = -31411.825022 eV Core-core repulsion = 27497.287523 eV Total energy + Delta-G solvation = -3914.537499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22940 -40.07383 -37.60461 -37.57308 -34.49002 -32.99054 -32.05383 -31.20764 -30.90381 -30.04039 -29.49600 -26.93824 -25.68874 -24.15698 -23.67985 -23.10709 -22.21832 -20.97198 -20.95039 -19.08449 -18.42103 -17.69488 -17.44786 -16.56574 -15.98567 -15.53546 -15.31620 -15.19878 -15.08664 -14.75614 -14.02249 -13.99302 -13.70148 -13.46518 -13.15814 -12.97161 -12.92281 -12.40720 -12.10432 -12.05234 -11.92354 -11.60248 -11.47132 -11.16004 -11.05522 -10.85925 -10.76040 -10.60026 -10.50582 -10.31532 -10.09138 -9.97968 -9.90945 -9.64732 -9.59948 -9.32769 -8.63007 -8.44847 -8.08813 -7.83442 -6.66117 -5.70713 -3.09468 1.02405 1.49575 2.20878 2.89585 3.36720 3.40147 3.46036 3.48091 3.68450 4.02691 4.50492 4.56107 4.63740 4.85513 4.99207 5.01473 5.04482 5.22682 5.30285 5.46088 5.48801 5.54589 5.64953 5.70366 5.75718 5.77090 5.85050 6.04221 6.05086 6.12227 6.16566 6.30313 6.36325 6.50079 6.51194 6.56702 6.60039 6.63141 6.68769 6.82628 6.86623 6.92713 7.12586 7.22258 7.53395 7.68366 7.86305 8.05997 8.14218 8.46384 8.68974 9.25690 9.93326 10.44795 11.37763 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.005873 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.182646 B = 4766.635659 C = 6396.262077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.001 3.999 3 Si 0.897 3.103 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.152 3.848 11 C -0.160 4.160 12 C 0.141 3.859 13 H 0.087 0.913 14 C -0.128 4.128 15 C -0.115 4.115 16 C 0.106 3.894 17 H 0.063 0.937 18 C 0.184 3.816 19 N -0.581 5.581 20 C 0.632 3.368 21 O -0.549 6.549 22 C 0.013 3.987 23 N -0.179 5.179 24 N -0.415 5.415 25 H 0.446 0.554 26 C 0.064 3.936 27 C -0.121 4.121 28 C -0.089 4.089 29 C -0.148 4.148 30 C -0.041 4.041 31 C -0.107 4.107 32 H 0.249 0.751 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 -6.039 -10.469 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.024 3.976 11 C -0.201 4.201 12 C 0.037 3.963 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.153 4.153 16 C 0.003 3.997 17 H 0.081 0.919 18 C 0.060 3.940 19 N -0.313 5.313 20 C 0.420 3.580 21 O -0.426 6.426 22 C -0.158 4.158 23 N -0.009 5.009 24 N -0.134 5.134 25 H 0.291 0.709 26 C -0.050 4.050 27 C -0.143 4.143 28 C -0.110 4.110 29 C -0.167 4.167 30 C -0.061 4.061 31 C -0.114 4.114 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.705 -6.164 -9.940 12.607 hybrid contribution 0.477 1.595 -0.461 1.727 sum -4.228 -4.570 -10.401 12.122 Atomic orbital electron populations 1.69985 1.04848 1.24748 1.56174 1.24875 0.95401 0.97728 1.01635 0.86354 0.79149 0.84198 0.77547 1.21826 1.21820 1.20523 1.19197 0.91130 0.84455 1.42126 0.91820 1.44359 1.22192 1.01291 1.63923 1.20157 0.95688 0.88348 0.93414 1.22291 0.99334 0.99966 0.98514 1.21704 0.93377 0.88539 0.92659 0.89484 1.22768 0.95580 0.97702 1.00542 1.21566 0.97295 0.94820 1.01608 1.21937 0.87234 0.96971 0.93595 0.91891 1.21564 0.87516 0.90857 0.94050 1.48757 1.25823 1.37062 1.19620 1.15923 0.83618 0.79319 0.79185 1.90733 1.26168 1.65201 1.60545 1.22639 0.95579 1.02293 0.95248 1.73168 1.09021 1.01449 1.17243 1.43151 1.22526 1.31506 1.16168 0.70945 1.19228 0.93938 1.00144 0.91646 1.19735 1.01483 0.99774 0.93269 1.20661 0.93730 0.98613 0.97981 1.20770 0.98954 0.97748 0.99230 1.20389 0.97260 0.97240 0.91223 1.19425 0.96813 0.98767 0.96428 0.94087 0.94378 0.93722 0.92400 0.92131 0.91983 0.89819 0.91502 0.89823 0.93512 0.89706 0.85676 0.85487 0.85581 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.96 10.63 55.49 0.59 -25.37 16 2 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 3 Si 0.90 22.60 29.57 -169.99 -5.03 17.57 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.67 9.62 -15.06 -0.14 -6.82 16 8 H 0.06 1.79 7.85 -52.48 -0.41 1.38 16 9 N -0.59 -14.72 2.94 -172.95 -0.51 -15.23 16 10 C 0.15 3.11 5.25 -5.76 -0.03 3.08 16 11 C -0.16 -2.94 4.96 -28.16 -0.14 -3.08 16 12 C 0.14 2.42 3.96 -66.54 -0.26 2.16 16 13 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 14 C -0.13 -1.77 5.92 -25.06 -0.15 -1.91 16 15 C -0.11 -1.73 5.82 -27.64 -0.16 -1.89 16 16 C 0.11 2.01 1.83 -68.55 -0.13 1.88 16 17 H 0.06 1.17 6.26 -51.93 -0.33 0.85 16 18 C 0.18 4.29 4.41 -2.44 -0.01 4.28 16 19 N -0.58 -11.47 2.64 -158.43 -0.42 -11.88 16 20 C 0.63 13.57 7.88 -12.53 -0.10 13.47 16 21 O -0.55 -12.54 16.80 5.27 0.09 -12.45 16 22 C 0.01 0.27 7.01 -80.75 -0.57 -0.30 16 23 N -0.18 -3.37 7.61 34.47 0.26 -3.10 16 24 N -0.41 -6.43 6.85 32.34 0.22 -6.21 16 25 H 0.45 5.27 8.96 -190.49 -1.71 3.56 16 26 C 0.06 0.99 7.38 -84.21 -0.62 0.37 16 27 C -0.12 -1.49 10.03 -39.82 -0.40 -1.89 16 28 C -0.09 -1.01 9.96 -39.90 -0.40 -1.41 16 29 C -0.15 -1.85 9.98 -39.89 -0.40 -2.25 16 30 C -0.04 -0.65 9.87 -39.78 -0.39 -1.04 16 31 C -0.11 -1.94 6.34 -105.05 -0.67 -2.60 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.04 0.71 4.23 -51.93 -0.22 0.49 16 34 H 0.04 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.06 6.57 -51.93 -0.34 0.72 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.27 7.11 -51.93 -0.37 0.90 16 41 H 0.05 1.18 7.66 -51.93 -0.40 0.78 16 42 H 0.08 2.19 4.98 -51.93 -0.26 1.93 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.14 2.18 7.65 -52.49 -0.40 1.78 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -33.61 356.05 -11.44 -45.05 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.36 Total: 4.27 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -4.65 Total: 1.98 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.15 Total: -61.79 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.61 -11.44 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039466533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.428 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds