Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47413 * 265.00541 * 3 2 1 5 5 H 1.48502 * 109.46889 * 25.00096 * 3 2 1 6 6 H 1.48493 * 109.47117 * 144.99955 * 3 2 1 7 7 C 1.38815 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99796 * 184.88097 * 7 2 1 9 9 N 1.36934 * 120.00029 * 4.87854 * 7 2 1 10 10 C 1.47558 * 125.67602 * 4.18970 * 9 7 2 11 11 C 1.55184 * 105.00746 * 203.86131 * 10 9 7 12 12 C 1.53662 * 101.41686 * 324.50450 * 11 10 9 13 13 C 1.53716 * 111.40623 * 272.69974 * 12 11 10 14 14 C 1.55190 * 101.43600 * 272.72445 * 13 12 11 15 15 N 1.47562 * 105.00596 * 324.52313 * 14 13 12 16 16 C 1.34774 * 125.67374 * 203.86059 * 15 14 13 17 17 O 1.21631 * 119.99933 * 355.29374 * 16 15 14 18 18 C 1.47257 * 119.99919 * 175.29662 * 16 15 14 19 19 C 1.38940 * 120.90509 * 7.85303 * 18 16 15 20 20 C 1.39765 * 119.18591 * 179.97438 * 19 18 16 21 21 C 1.35070 * 121.27980 * 0.02562 * 20 19 18 22 22 N 1.36222 * 121.76450 * 359.97438 * 21 20 19 23 23 N 1.40089 * 132.48320 * 179.97438 * 22 21 20 24 24 C 1.31347 * 108.88225 * 180.02562 * 23 22 21 25 25 C 1.38881 * 108.95060 * 359.97438 * 24 23 22 26 26 C 1.37176 * 120.19698 * 359.74746 * 22 21 20 27 27 C 1.47406 * 108.65043 * 23.86192 * 15 14 13 28 28 C 1.47405 * 125.67020 * 184.19564 * 9 7 2 29 29 H 0.97002 * 119.99975 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.33542 * 322.74438 * 10 9 7 31 31 H 1.09001 * 110.33127 * 84.87688 * 10 9 7 32 32 H 1.09004 * 111.03668 * 206.47323 * 11 10 9 33 33 H 1.08995 * 111.03534 * 82.54127 * 11 10 9 34 34 H 1.08999 * 111.00555 * 154.69502 * 13 12 11 35 35 H 1.08995 * 111.07753 * 30.78852 * 13 12 11 36 36 H 1.08998 * 110.33007 * 205.64071 * 14 13 12 37 37 H 1.08992 * 110.42221 * 83.45332 * 14 13 12 38 38 H 1.07993 * 120.40462 * 0.02562 * 19 18 16 39 39 H 1.08009 * 119.36002 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.11408 * 179.97438 * 21 20 19 41 41 H 1.08010 * 125.52553 * 179.97438 * 24 23 22 42 42 H 1.08000 * 126.22327 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.98825 * 117.24273 * 27 15 14 44 44 H 1.09007 * 109.98529 * 238.50716 * 27 15 14 45 45 H 1.08997 * 109.99121 * 58.54393 * 28 9 7 46 46 H 1.09000 * 109.98717 * 297.23336 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 1.3988 2.6808 0.5917 6 1 3.4909 1.4730 0.8030 7 6 2.0102 -1.2022 -0.0005 8 1 3.0873 -1.2039 0.0790 9 7 1.3293 -2.3859 -0.1019 10 6 -0.1256 -2.5271 -0.3035 11 6 -0.4735 -3.9339 0.2518 12 6 0.7795 -4.7332 -0.1382 13 6 0.6566 -5.3123 -1.5568 14 6 -0.0610 -6.6598 -1.2779 15 7 0.4819 -7.1215 0.0142 16 6 0.5158 -8.3995 0.4409 17 8 -0.0032 -9.2764 -0.2233 18 6 1.1811 -8.7342 1.7112 19 6 1.6369 -7.7355 2.5628 20 6 2.2629 -8.0938 3.7600 21 6 2.4325 -9.3894 4.1023 22 7 2.0034 -10.4047 3.3018 23 7 2.0598 -11.7986 3.4295 24 6 1.5008 -12.3451 2.3740 25 6 1.0612 -11.3383 1.5243 26 6 1.3752 -10.1285 2.1141 27 6 0.9809 -5.9525 0.7606 28 6 1.9278 -3.7309 -0.0277 29 1 -0.4850 0.8401 0.0004 30 1 -0.6615 -1.7575 0.2521 31 1 -0.3687 -2.4662 -1.3643 32 1 -1.3619 -4.3375 -0.2339 33 1 -0.5994 -3.9071 1.3341 34 1 1.6395 -5.4766 -1.9983 35 1 0.0476 -4.6687 -2.1915 36 1 0.1670 -7.3800 -2.0636 37 1 -1.1379 -6.5090 -1.2041 38 1 1.5083 -6.6951 2.3033 39 1 2.6180 -7.3197 4.4243 40 1 2.9213 -9.6266 5.0356 41 1 1.3994 -13.4055 2.1957 42 1 0.5621 -11.4758 0.5764 43 1 0.4157 -5.8315 1.6847 44 1 2.0400 -6.0785 0.9857 45 1 2.4426 -3.8577 0.9246 46 1 2.6271 -3.8735 -0.8516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041439390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = 116.153379 kcal Electronic energy + Delta-G solvation = -29501.370595 eV Core-core repulsion = 25587.213701 eV Total energy + Delta-G solvation = -3914.156894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.98075 -41.61485 -39.72903 -38.09838 -37.16451 -34.55407 -33.99279 -32.03952 -31.70781 -30.86081 -30.18471 -29.24323 -27.49721 -26.20113 -24.92069 -23.87321 -23.64947 -22.65603 -22.02297 -20.80344 -20.24295 -18.88243 -18.65315 -18.28947 -17.28768 -16.97569 -16.80266 -16.57957 -16.52606 -16.40056 -15.80347 -15.55541 -15.09299 -14.84155 -14.48125 -14.36287 -14.24039 -14.06024 -13.85951 -13.63993 -13.35272 -13.24386 -12.95993 -12.83138 -12.81219 -12.65036 -12.40345 -12.28900 -11.98508 -11.89110 -11.72734 -11.55962 -11.43944 -11.32749 -11.19391 -10.94669 -10.73292 -10.43365 -9.77801 -8.80221 -8.70083 -7.66499 -5.16187 -0.69346 0.07110 1.15763 1.51201 1.52521 1.56581 1.60117 1.70448 1.83572 2.46765 2.54086 3.13987 3.30707 3.34840 3.43680 3.46327 3.66453 3.69877 3.80221 3.87262 3.96662 4.20448 4.28386 4.32988 4.34218 4.45909 4.48429 4.57965 4.68813 4.74992 4.77024 4.80268 4.86404 4.94079 4.96185 5.05270 5.06449 5.11214 5.20913 5.26733 5.33045 5.37822 5.54510 5.55659 5.70149 5.80796 5.91456 6.35367 6.44475 6.46464 6.99872 7.18337 7.86148 8.48572 9.29023 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002591 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.277024 B =10805.159496 C =11737.466039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.072 4.072 13 C -0.109 4.109 14 C 0.114 3.886 15 N -0.605 5.605 16 C 0.579 3.421 17 O -0.571 6.571 18 C -0.164 4.164 19 C -0.046 4.046 20 C -0.169 4.169 21 C 0.131 3.869 22 N -0.294 5.294 23 N -0.341 5.341 24 C 0.086 3.914 25 C -0.290 4.290 26 C 0.113 3.887 27 C 0.107 3.893 28 C 0.147 3.853 29 H 0.245 0.755 30 H 0.084 0.916 31 H -0.016 1.016 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.192 0.808 39 H 0.205 0.795 40 H 0.202 0.798 41 H 0.228 0.772 42 H 0.152 0.848 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -18.259 7.192 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.100 0.900 9 N -0.348 5.348 10 C 0.015 3.985 11 C -0.152 4.152 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.008 4.008 15 N -0.338 5.338 16 C 0.370 3.630 17 O -0.452 6.452 18 C -0.169 4.169 19 C -0.068 4.068 20 C -0.190 4.190 21 C 0.007 3.993 22 N -0.062 5.062 23 N -0.164 5.164 24 C -0.092 4.092 25 C -0.319 4.319 26 C -0.006 4.006 27 C -0.015 4.015 28 C 0.022 3.978 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.001 0.999 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.208 0.792 39 H 0.222 0.778 40 H 0.219 0.781 41 H 0.244 0.756 42 H 0.170 0.830 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.061 0.939 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.992 -18.970 8.013 20.976 hybrid contribution -0.281 1.191 -1.267 1.762 sum 3.711 -17.779 6.745 19.374 Atomic orbital electron populations 1.69906 1.06096 1.24660 1.59022 1.25536 0.96470 1.00726 1.03265 0.85150 0.77659 0.79513 0.77359 1.21867 1.22361 1.19341 1.19419 0.91217 0.83861 1.41417 0.90035 1.44858 1.04314 1.00769 1.84904 1.22012 0.84963 0.95525 0.95976 1.22721 0.96195 0.95372 1.00941 1.21435 0.96697 0.93491 0.95705 1.22611 1.01629 0.94540 0.95876 1.22339 0.98400 0.95405 0.84666 1.48421 1.60092 1.05303 1.19946 1.17504 0.79503 0.80984 0.84965 1.90753 1.48356 1.47489 1.58652 1.20213 1.08685 0.90302 0.97694 1.23524 0.89267 1.02094 0.91946 1.21285 1.03637 0.95216 0.98908 1.22385 0.95329 0.85387 0.96226 1.46497 1.38541 1.06499 1.14624 1.77773 1.30350 0.83177 1.25107 1.24453 0.92944 1.02088 0.89711 1.21566 1.15496 0.89608 1.05195 1.20363 0.97433 0.94505 0.88328 1.22539 1.00859 0.82942 0.95161 1.21255 0.93790 0.83941 0.98805 0.94504 0.89839 0.99855 0.90424 0.90988 0.90047 0.89902 0.90476 0.90706 0.79188 0.77835 0.78092 0.75620 0.83020 0.88157 0.88127 0.93935 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.76 10.05 21.65 0.22 -53.54 16 2 C -0.07 -3.63 5.47 84.86 0.46 -3.17 16 3 Si 0.97 43.65 29.56 68.60 2.03 45.67 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.23 -11.96 10.27 84.03 0.86 -11.10 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -28.85 3.41 -693.05 -2.36 -31.21 16 10 C 0.14 6.26 6.03 86.93 0.52 6.78 16 11 C -0.11 -3.59 5.89 31.57 0.19 -3.40 16 12 C -0.07 -1.95 0.62 -51.84 -0.03 -1.98 16 13 C -0.11 -2.73 5.89 31.59 0.19 -2.54 16 14 C 0.11 2.72 6.78 86.93 0.59 3.31 16 15 N -0.61 -14.64 3.34 -819.22 -2.74 -17.38 16 16 C 0.58 16.33 7.81 86.61 0.68 17.00 16 17 O -0.57 -19.83 15.54 -4.13 -0.06 -19.89 16 18 C -0.16 -3.97 6.06 -18.61 -0.11 -4.08 16 19 C -0.05 -0.75 8.70 22.81 0.20 -0.55 16 20 C -0.17 -1.89 9.90 21.91 0.22 -1.67 16 21 C 0.13 1.89 11.12 83.28 0.93 2.81 16 22 N -0.29 -6.75 3.89 -183.71 -0.71 -7.47 16 23 N -0.34 -8.23 12.66 -57.39 -0.73 -8.96 16 24 C 0.09 1.85 11.95 84.92 1.01 2.86 16 25 C -0.29 -7.69 10.19 22.42 0.23 -7.46 16 26 C 0.11 3.00 6.84 40.43 0.28 3.28 16 27 C 0.11 2.19 4.04 86.14 0.35 2.54 16 28 C 0.15 5.03 6.42 86.14 0.55 5.58 16 29 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.08 4.40 5.50 -2.39 -0.01 4.38 16 31 H -0.02 -0.80 8.10 -2.39 -0.02 -0.82 16 32 H 0.08 2.20 7.88 -2.38 -0.02 2.18 16 33 H 0.07 2.17 7.79 -2.39 -0.02 2.15 16 34 H 0.08 1.98 7.80 -2.39 -0.02 1.96 16 35 H 0.08 2.25 7.89 -2.39 -0.02 2.23 16 36 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 37 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.19 2.50 2.91 -3.81 -0.01 2.49 16 39 H 0.20 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.15 4.27 7.13 -2.91 -0.02 4.25 16 43 H 0.10 1.75 6.33 -2.39 -0.02 1.74 16 44 H 0.10 1.72 6.29 -2.38 -0.01 1.70 16 45 H 0.04 1.34 7.78 -2.39 -0.02 1.32 16 46 H 0.03 0.95 7.61 -2.39 -0.02 0.93 16 Total: -1.00 -74.32 363.28 3.76 -70.57 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.01 Total: 13.99 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 7.11 Total: 8.21 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.33 Total: -118.55 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -74.32 3.76 -70.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041439390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.721 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds