Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 119.99799 * 2 1 4 4 H 1.48507 * 109.47338 * 264.99673 * 3 2 1 5 5 H 1.48501 * 109.47412 * 24.99698 * 3 2 1 6 6 H 1.48506 * 109.47227 * 145.00146 * 3 2 1 7 7 C 1.38817 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 184.88846 * 7 2 1 9 9 N 1.36939 * 119.99856 * 4.89326 * 7 2 1 10 10 C 1.47559 * 125.67502 * 4.23116 * 9 7 2 11 11 C 1.55178 * 105.00631 * 203.86227 * 10 9 7 12 12 C 1.53661 * 101.41958 * 324.50593 * 11 10 9 13 13 C 1.53720 * 111.40472 * 272.69961 * 12 11 10 14 14 C 1.55181 * 101.43709 * 272.72489 * 13 12 11 15 15 N 1.47557 * 105.00490 * 324.52209 * 14 13 12 16 16 C 1.34778 * 125.67556 * 203.86119 * 15 14 13 17 17 O 1.21604 * 120.00176 * 355.19039 * 16 15 14 18 18 C 1.47468 * 120.00029 * 175.19097 * 16 15 14 19 19 C 1.39008 * 120.29779 * 8.20939 * 18 16 15 20 20 C 1.38498 * 120.36582 * 179.97438 * 19 18 16 21 21 C 1.37827 * 120.79307 * 359.96917 * 20 19 18 22 22 C 1.39202 * 120.19908 * 0.02562 * 21 20 19 23 23 N 1.37224 * 133.65245 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.98249 * 0.04487 * 23 22 21 25 25 N 1.40033 * 108.03327 * 180.02562 * 23 22 21 26 26 C 1.30262 * 109.70701 * 359.97438 * 25 23 22 27 27 C 1.40685 * 119.78809 * 359.76081 * 22 21 20 28 28 C 1.47403 * 108.65397 * 23.86224 * 15 14 13 29 29 C 1.47398 * 125.67259 * 184.23511 * 9 7 2 30 30 H 0.96993 * 120.00504 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.33527 * 322.74868 * 10 9 7 32 32 H 1.09001 * 110.33545 * 84.87658 * 10 9 7 33 33 H 1.09000 * 111.03812 * 206.47069 * 11 10 9 34 34 H 1.09004 * 111.03812 * 82.54478 * 11 10 9 35 35 H 1.08993 * 111.00622 * 154.68655 * 13 12 11 36 36 H 1.09006 * 111.07816 * 30.78785 * 13 12 11 37 37 H 1.09006 * 110.33269 * 205.64298 * 14 13 12 38 38 H 1.09001 * 110.42386 * 83.45152 * 14 13 12 39 39 H 1.07998 * 119.80955 * 359.97438 * 19 18 16 40 40 H 1.08003 * 119.60027 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.89813 * 180.02562 * 21 20 19 42 42 H 1.08000 * 125.64972 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.98875 * 117.24389 * 28 15 14 44 44 H 1.08999 * 109.98891 * 238.51390 * 28 15 14 45 45 H 1.09005 * 109.98667 * 58.54157 * 29 9 7 46 46 H 1.08999 * 109.98581 * 297.23812 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.6033 1.9854 -1.3948 5 1 1.3986 2.6809 0.5916 6 1 3.4908 1.4730 0.8030 7 6 2.0102 -1.2022 0.0005 8 1 3.0873 -1.2038 0.0802 9 7 1.3293 -2.3860 -0.1001 10 6 -0.1255 -2.5274 -0.3027 11 6 -0.4738 -3.9334 0.2538 12 6 0.7795 -4.7333 -0.1341 13 6 0.6577 -5.3141 -1.5522 14 6 -0.0602 -6.6611 -1.2724 15 7 0.4815 -7.1214 0.0207 16 6 0.5150 -8.3989 0.4489 17 8 -0.0050 -9.2761 -0.2136 18 6 1.1822 -8.7330 1.7208 19 6 1.6282 -7.7228 2.5652 20 6 2.2545 -8.0350 3.7604 21 6 2.4465 -9.3475 4.1347 22 6 2.0110 -10.3814 3.3106 23 7 2.0558 -11.7498 3.4037 24 1 2.4377 -12.2590 4.1356 25 7 1.4532 -12.2822 2.2572 26 6 1.0498 -11.3150 1.4836 27 6 1.3687 -10.0830 2.0950 28 6 0.9800 -5.9516 0.7662 29 6 1.9276 -3.7309 -0.0240 30 1 -0.4850 0.8399 -0.0004 31 1 -0.6617 -1.7571 0.2515 32 1 -0.3677 -2.4676 -1.3638 33 1 -1.3619 -4.3376 -0.2321 34 1 -0.6007 -3.9055 1.3361 35 1 1.6409 -5.4788 -1.9927 36 1 0.0492 -4.6711 -2.1882 37 1 0.1684 -7.3823 -2.0571 38 1 -1.1373 -6.5102 -1.1997 39 1 1.4854 -6.6889 2.2877 40 1 2.5965 -7.2403 4.4070 41 1 2.9363 -9.5745 5.0701 42 1 0.5507 -11.4355 0.5334 43 1 0.4141 -5.8295 1.6898 44 1 2.0389 -6.0774 0.9923 45 1 2.4417 -3.8566 0.9290 46 1 2.6277 -3.8744 -0.8470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041528838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = 115.635785 kcal Electronic energy + Delta-G solvation = -29487.347458 eV Core-core repulsion = 25573.168119 eV Total energy + Delta-G solvation = -3914.179338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79166 -40.43392 -38.49699 -37.14307 -35.72024 -32.97203 -32.62900 -31.06136 -30.21098 -29.85027 -28.78946 -28.63281 -25.94549 -24.63695 -23.41858 -22.70281 -22.55259 -21.78052 -20.31999 -20.05576 -18.94155 -18.01768 -17.30503 -16.87225 -16.26737 -16.00144 -15.34837 -15.32317 -15.06193 -14.84329 -14.65881 -14.33608 -13.87451 -13.85009 -13.49906 -13.27012 -13.00933 -12.82053 -12.49521 -12.19235 -12.02448 -11.98613 -11.88119 -11.45251 -11.21869 -11.11403 -11.01501 -10.88016 -10.80079 -10.55990 -10.31036 -10.12929 -10.03089 -9.86966 -9.78982 -9.45684 -8.97098 -8.75483 -8.62784 -8.32028 -6.88218 -5.65700 -3.13680 0.26164 1.14066 2.29119 2.44251 2.73452 2.88541 3.37064 3.42236 3.43776 3.65579 4.16696 4.42450 4.46913 4.54060 4.62690 4.65194 4.74826 4.92272 4.93928 4.99449 5.26578 5.31363 5.38072 5.43259 5.46112 5.53761 5.60395 5.66058 5.78342 5.85384 5.93925 5.95198 6.03286 6.11134 6.17300 6.20506 6.27169 6.29854 6.47076 6.48835 6.55182 6.68841 6.75730 6.98281 7.31349 7.42048 7.45467 7.59227 7.81688 8.08283 8.36519 9.17741 9.78505 10.42079 11.32719 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.002598 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.348974 B =10775.912721 C =11710.959400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.130 4.130 12 C -0.084 4.084 13 C -0.114 4.114 14 C 0.109 3.891 15 N -0.606 5.606 16 C 0.571 3.429 17 O -0.541 6.541 18 C -0.053 4.053 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.121 4.121 22 C 0.117 3.883 23 N -0.510 5.510 24 H 0.441 0.559 25 N -0.255 5.255 26 C 0.090 3.910 27 C -0.131 4.131 28 C 0.104 3.896 29 C 0.151 3.849 30 H 0.252 0.748 31 H 0.120 0.880 32 H 0.008 0.992 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.169 0.831 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.026 0.974 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -18.047 6.390 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.085 4.085 13 C -0.152 4.152 14 C -0.013 4.013 15 N -0.338 5.338 16 C 0.361 3.639 17 O -0.420 6.420 18 C -0.059 4.059 19 C -0.172 4.172 20 C -0.095 4.095 21 C -0.143 4.143 22 C 0.000 4.000 23 N -0.225 5.225 24 H 0.286 0.714 25 N -0.070 5.070 26 C -0.105 4.105 27 C -0.140 4.140 28 C -0.018 4.018 29 C 0.025 3.975 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.186 0.814 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.219 0.781 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.460 -19.671 6.206 20.773 hybrid contribution 0.708 1.396 0.361 1.606 sum 3.168 -18.275 6.567 19.676 Atomic orbital electron populations 1.69621 1.04924 1.24720 1.57654 1.24772 0.95663 0.97748 1.02491 0.86085 0.78487 0.83218 0.77660 1.21623 1.21682 1.20747 1.19057 0.90698 0.82537 1.42692 0.90509 1.44588 1.03607 0.99496 1.85035 1.22249 0.85444 0.93137 0.97705 1.22893 0.94652 0.98632 1.00636 1.21627 0.99158 0.93510 0.94220 1.22669 1.01299 0.94536 0.96710 1.22377 0.98278 0.95995 0.84651 1.48500 1.59999 1.05622 1.19719 1.17780 0.79883 0.81068 0.85145 1.90730 1.46876 1.46608 1.57750 1.19355 0.99931 0.91683 0.94885 1.22740 0.98330 1.01748 0.94395 1.21038 0.96805 0.95508 0.96172 1.20271 1.03495 0.90884 0.99651 1.18808 0.99365 0.85496 0.96328 1.46092 1.53869 1.02613 1.19936 0.71432 1.76792 1.12379 1.23235 0.94552 1.24193 0.98179 0.88171 0.99994 1.18659 1.05980 0.93483 0.95898 1.22498 0.99445 0.84554 0.95305 1.21066 0.92718 0.85592 0.98128 0.93658 0.86289 0.97420 0.92125 0.91822 0.90623 0.89165 0.90506 0.91131 0.81423 0.84288 0.85268 0.78101 0.89974 0.90039 0.95566 0.95580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.66 10.05 55.49 0.56 -25.11 16 2 C -0.01 -0.30 5.47 -17.43 -0.10 -0.40 16 3 Si 0.91 21.28 29.56 -169.99 -5.02 16.25 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.22 -5.84 10.27 -15.06 -0.15 -5.99 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.22 3.41 -170.42 -0.58 -14.80 16 10 C 0.14 3.11 6.03 -2.31 -0.01 3.10 16 11 C -0.13 -2.18 5.89 -25.24 -0.15 -2.33 16 12 C -0.08 -1.26 0.62 -153.99 -0.10 -1.35 16 13 C -0.11 -1.54 5.89 -25.20 -0.15 -1.69 16 14 C 0.11 1.39 6.78 -2.31 -0.02 1.37 16 15 N -0.61 -8.00 3.34 -175.81 -0.59 -8.59 16 16 C 0.57 8.18 7.80 -12.50 -0.10 8.08 16 17 O -0.54 -8.88 15.30 5.27 0.08 -8.80 16 18 C -0.05 -0.67 5.90 -104.68 -0.62 -1.29 16 19 C -0.15 -1.61 8.59 -39.20 -0.34 -1.95 16 20 C -0.07 -0.64 9.99 -39.64 -0.40 -1.04 16 21 C -0.12 -1.03 10.06 -39.37 -0.40 -1.43 16 22 C 0.12 1.26 7.32 -84.17 -0.62 0.65 16 23 N -0.51 -5.04 7.45 32.35 0.24 -4.80 16 24 H 0.44 2.80 8.96 -182.65 -1.64 1.16 16 25 N -0.25 -3.12 12.58 30.81 0.39 -2.73 16 26 C 0.09 1.15 11.24 -17.10 -0.19 0.95 16 27 C -0.13 -1.69 5.99 -106.68 -0.64 -2.33 16 28 C 0.10 1.29 4.04 -3.65 -0.01 1.28 16 29 C 0.15 2.79 6.42 -3.65 -0.02 2.77 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.12 3.07 5.50 -51.93 -0.29 2.78 16 32 H 0.01 0.18 8.10 -51.93 -0.42 -0.24 16 33 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.06 1.06 7.79 -51.93 -0.40 0.65 16 35 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 36 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 37 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.17 1.66 2.76 -57.28 -0.16 1.50 16 40 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.20 2.45 6.99 -52.49 -0.37 2.09 16 43 H 0.08 0.95 6.31 -51.93 -0.33 0.62 16 44 H 0.08 0.93 6.29 -51.93 -0.33 0.60 16 45 H 0.03 0.47 7.78 -51.93 -0.40 0.07 16 46 H 0.03 0.49 7.61 -51.93 -0.40 0.09 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -31.73 361.43 -10.66 -42.40 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.18 Total: 2.33 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.00 Total: -1.60 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.02 Total: -56.03 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.73 -10.66 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041528838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.033 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds