Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 119.99799 * 2 1 4 4 H 1.48507 * 109.47338 * 264.99673 * 3 2 1 5 5 H 1.48501 * 109.47412 * 24.99698 * 3 2 1 6 6 H 1.48506 * 109.47227 * 145.00146 * 3 2 1 7 7 C 1.38817 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 184.88846 * 7 2 1 9 9 N 1.36939 * 119.99856 * 4.89326 * 7 2 1 10 10 C 1.47559 * 125.67502 * 4.23116 * 9 7 2 11 11 C 1.55178 * 105.00631 * 203.86227 * 10 9 7 12 12 C 1.53661 * 101.41958 * 324.50593 * 11 10 9 13 13 C 1.53720 * 111.40472 * 272.69961 * 12 11 10 14 14 C 1.55181 * 101.43709 * 272.72489 * 13 12 11 15 15 N 1.47557 * 105.00490 * 324.52209 * 14 13 12 16 16 C 1.34778 * 125.67556 * 203.86119 * 15 14 13 17 17 O 1.21604 * 120.00176 * 355.19039 * 16 15 14 18 18 C 1.47468 * 120.00029 * 175.19097 * 16 15 14 19 19 C 1.39008 * 120.29779 * 8.20939 * 18 16 15 20 20 C 1.38498 * 120.36582 * 179.97438 * 19 18 16 21 21 C 1.37827 * 120.79307 * 359.96917 * 20 19 18 22 22 C 1.39202 * 120.19908 * 0.02562 * 21 20 19 23 23 N 1.37224 * 133.65245 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.98249 * 0.04487 * 23 22 21 25 25 N 1.40033 * 108.03327 * 180.02562 * 23 22 21 26 26 C 1.30262 * 109.70701 * 359.97438 * 25 23 22 27 27 C 1.40685 * 119.78809 * 359.76081 * 22 21 20 28 28 C 1.47403 * 108.65397 * 23.86224 * 15 14 13 29 29 C 1.47398 * 125.67259 * 184.23511 * 9 7 2 30 30 H 0.96993 * 120.00504 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.33527 * 322.74868 * 10 9 7 32 32 H 1.09001 * 110.33545 * 84.87658 * 10 9 7 33 33 H 1.09000 * 111.03812 * 206.47069 * 11 10 9 34 34 H 1.09004 * 111.03812 * 82.54478 * 11 10 9 35 35 H 1.08993 * 111.00622 * 154.68655 * 13 12 11 36 36 H 1.09006 * 111.07816 * 30.78785 * 13 12 11 37 37 H 1.09006 * 110.33269 * 205.64298 * 14 13 12 38 38 H 1.09001 * 110.42386 * 83.45152 * 14 13 12 39 39 H 1.07998 * 119.80955 * 359.97438 * 19 18 16 40 40 H 1.08003 * 119.60027 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.89813 * 180.02562 * 21 20 19 42 42 H 1.08000 * 125.64972 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.98875 * 117.24389 * 28 15 14 44 44 H 1.08999 * 109.98891 * 238.51390 * 28 15 14 45 45 H 1.09005 * 109.98667 * 58.54157 * 29 9 7 46 46 H 1.08999 * 109.98581 * 297.23812 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.6033 1.9854 -1.3948 5 1 1.3986 2.6809 0.5916 6 1 3.4908 1.4730 0.8030 7 6 2.0102 -1.2022 0.0005 8 1 3.0873 -1.2038 0.0802 9 7 1.3293 -2.3860 -0.1001 10 6 -0.1255 -2.5274 -0.3027 11 6 -0.4738 -3.9334 0.2538 12 6 0.7795 -4.7333 -0.1341 13 6 0.6577 -5.3141 -1.5522 14 6 -0.0602 -6.6611 -1.2724 15 7 0.4815 -7.1214 0.0207 16 6 0.5150 -8.3989 0.4489 17 8 -0.0050 -9.2761 -0.2136 18 6 1.1822 -8.7330 1.7208 19 6 1.6282 -7.7228 2.5652 20 6 2.2545 -8.0350 3.7604 21 6 2.4465 -9.3475 4.1347 22 6 2.0110 -10.3814 3.3106 23 7 2.0558 -11.7498 3.4037 24 1 2.4377 -12.2590 4.1356 25 7 1.4532 -12.2822 2.2572 26 6 1.0498 -11.3150 1.4836 27 6 1.3687 -10.0830 2.0950 28 6 0.9800 -5.9516 0.7662 29 6 1.9276 -3.7309 -0.0240 30 1 -0.4850 0.8399 -0.0004 31 1 -0.6617 -1.7571 0.2515 32 1 -0.3677 -2.4676 -1.3638 33 1 -1.3619 -4.3376 -0.2321 34 1 -0.6007 -3.9055 1.3361 35 1 1.6409 -5.4788 -1.9927 36 1 0.0492 -4.6711 -2.1882 37 1 0.1684 -7.3823 -2.0571 38 1 -1.1373 -6.5102 -1.1997 39 1 1.4854 -6.6889 2.2877 40 1 2.5965 -7.2403 4.4070 41 1 2.9363 -9.5745 5.0701 42 1 0.5507 -11.4355 0.5334 43 1 0.4141 -5.8295 1.6898 44 1 2.0389 -6.0774 0.9923 45 1 2.4417 -3.8566 0.9290 46 1 2.6277 -3.8744 -0.8470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041528838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = 96.112064 kcal Electronic energy + Delta-G solvation = -29488.194070 eV Core-core repulsion = 25573.168119 eV Total energy + Delta-G solvation = -3915.025951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62790 -41.53637 -39.72213 -37.95938 -37.15196 -34.44133 -33.67796 -32.28499 -31.23130 -31.00117 -30.19278 -29.70488 -27.42885 -25.92296 -24.73225 -23.62716 -23.43701 -22.69507 -22.01646 -21.02281 -20.19308 -18.94444 -18.84560 -17.99825 -17.24779 -17.11597 -16.71602 -16.28278 -16.07628 -15.99732 -15.72118 -15.52556 -15.44599 -14.92758 -14.52983 -14.36895 -14.30582 -14.03553 -13.80119 -13.60949 -13.15977 -12.95409 -12.87064 -12.80122 -12.73372 -12.63288 -12.35122 -12.15365 -12.02039 -11.97445 -11.70285 -11.50774 -11.37828 -11.25263 -11.14824 -10.85317 -10.72378 -9.83851 -9.61712 -9.09887 -8.79159 -7.65458 -5.15244 -0.55780 0.37251 1.38499 1.51718 1.53042 1.60764 1.72134 1.81972 1.87440 2.54923 2.81385 3.25515 3.35996 3.47924 3.62454 3.67209 3.70327 3.82026 3.88843 3.98015 4.08052 4.24301 4.28391 4.31565 4.42083 4.52749 4.55782 4.68769 4.73289 4.79516 4.80457 4.86929 4.89008 4.99186 5.07940 5.13802 5.21246 5.25690 5.31014 5.35728 5.39087 5.40568 5.55385 5.71281 5.73415 5.92470 6.29356 6.41208 6.45559 6.52521 7.04502 7.19276 7.87074 8.49771 9.30077 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.002598 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.348974 B =10775.912721 C =11710.959400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.074 4.074 13 C -0.109 4.109 14 C 0.112 3.888 15 N -0.605 5.605 16 C 0.568 3.432 17 O -0.572 6.572 18 C -0.079 4.079 19 C -0.145 4.145 20 C -0.074 4.074 21 C -0.106 4.106 22 C 0.110 3.890 23 N -0.497 5.497 24 H 0.456 0.544 25 N -0.270 5.270 26 C 0.073 3.927 27 C -0.157 4.157 28 C 0.111 3.889 29 C 0.147 3.853 30 H 0.245 0.755 31 H 0.084 0.916 32 H -0.016 1.016 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.195 0.805 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.041 0.959 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -18.777 8.569 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.348 5.348 10 C 0.015 3.985 11 C -0.152 4.152 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.009 4.009 15 N -0.337 5.337 16 C 0.359 3.641 17 O -0.453 6.453 18 C -0.085 4.085 19 C -0.164 4.164 20 C -0.094 4.094 21 C -0.128 4.128 22 C -0.008 4.008 23 N -0.215 5.215 24 H 0.304 0.696 25 N -0.086 5.086 26 C -0.122 4.122 27 C -0.166 4.166 28 C -0.011 4.011 29 C 0.022 3.978 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.002 0.998 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.192 0.808 40 H 0.191 0.809 41 H 0.184 0.816 42 H 0.212 0.788 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.059 0.941 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.179 -20.430 8.399 22.481 hybrid contribution 0.239 1.602 -0.282 1.644 sum 4.417 -18.828 8.116 20.974 Atomic orbital electron populations 1.69902 1.06104 1.24664 1.59027 1.25540 0.96479 1.00737 1.03263 0.85143 0.77646 0.79475 0.77369 1.21833 1.22332 1.19355 1.19425 0.91217 0.83872 1.41430 0.90061 1.44863 1.04347 1.00769 1.84870 1.22011 0.84960 0.95529 0.95951 1.22714 0.96230 0.95402 1.00861 1.21461 0.96597 0.93611 0.95806 1.22604 1.01598 0.94641 0.95823 1.22336 0.98365 0.95406 0.84841 1.48496 1.59837 1.05611 1.19744 1.18117 0.79526 0.80826 0.85592 1.90708 1.48353 1.47413 1.58869 1.19297 1.01923 0.92308 0.94937 1.22885 0.97462 1.01381 0.94642 1.21451 0.95777 0.96519 0.95664 1.20732 1.01764 0.90115 1.00180 1.19095 0.99477 0.86073 0.96153 1.46088 1.53080 1.02687 1.19619 0.69638 1.76710 1.12864 1.23589 0.95404 1.24154 0.98995 0.88813 1.00217 1.18871 1.07143 0.93526 0.97072 1.22501 1.00880 0.82785 0.94886 1.21247 0.93839 0.83974 0.98701 0.94499 0.89842 0.99835 0.90420 0.91132 0.90089 0.89988 0.90375 0.90783 0.80789 0.80904 0.81635 0.78841 0.88379 0.88239 0.94118 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.20 10.05 21.65 0.22 -53.98 16 2 C -0.07 -3.68 5.47 84.86 0.46 -3.22 16 3 Si 0.97 43.99 29.56 68.60 2.03 46.02 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.23 -12.13 10.27 84.03 0.86 -11.26 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.62 -29.35 3.41 -693.07 -2.36 -31.71 16 10 C 0.14 6.37 6.03 86.92 0.52 6.89 16 11 C -0.11 -3.68 5.89 31.56 0.19 -3.50 16 12 C -0.07 -2.06 0.62 -51.84 -0.03 -2.09 16 13 C -0.11 -2.80 5.89 31.58 0.19 -2.62 16 14 C 0.11 2.73 6.78 86.93 0.59 3.31 16 15 N -0.60 -14.93 3.34 -828.40 -2.77 -17.69 16 16 C 0.57 15.80 7.80 86.68 0.68 16.48 16 17 O -0.57 -19.02 15.30 -4.04 -0.06 -19.09 16 18 C -0.08 -1.89 5.90 -19.90 -0.12 -2.01 16 19 C -0.14 -2.57 8.59 22.52 0.19 -2.38 16 20 C -0.07 -0.93 9.99 22.23 0.22 -0.71 16 21 C -0.11 -1.36 10.06 22.40 0.23 -1.13 16 22 C 0.11 2.10 7.32 39.13 0.29 2.39 16 23 N -0.50 -8.92 7.45 -51.56 -0.38 -9.31 16 24 H 0.46 4.72 8.96 -213.36 -1.91 2.81 16 25 N -0.27 -6.50 12.58 -56.44 -0.71 -7.21 16 26 C 0.07 1.88 11.24 85.65 0.96 2.84 16 27 C -0.16 -3.89 5.99 -21.20 -0.13 -4.02 16 28 C 0.11 2.44 4.04 86.14 0.35 2.78 16 29 C 0.15 5.20 6.42 86.14 0.55 5.75 16 30 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.08 4.45 5.50 -2.39 -0.01 4.44 16 32 H -0.02 -0.80 8.10 -2.39 -0.02 -0.82 16 33 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 34 H 0.07 2.20 7.79 -2.39 -0.02 2.19 16 35 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 36 H 0.08 2.27 7.89 -2.38 -0.02 2.25 16 37 H 0.08 1.90 8.09 -2.38 -0.02 1.88 16 38 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.18 2.76 2.76 -7.41 -0.02 2.74 16 40 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.19 5.06 6.99 -2.91 -0.02 5.04 16 43 H 0.10 1.91 6.31 -2.39 -0.02 1.89 16 44 H 0.10 1.89 6.29 -2.39 -0.02 1.87 16 45 H 0.04 1.34 7.78 -2.38 -0.02 1.32 16 46 H 0.03 0.97 7.61 -2.39 -0.02 0.95 16 Total: -1.00 -70.99 361.43 1.07 -69.92 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.89 Total: 15.55 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.00 Total: 7.51 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -6.01 Total: -119.91 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.99 1.07 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041528838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.030 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds