Wall clock time and date at job start Sat Apr 11 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48505 * 109.46890 * 264.95100 * 3 2 1 5 5 H 1.48502 * 109.46872 * 24.94690 * 3 2 1 6 6 H 1.48492 * 109.47282 * 144.94570 * 3 2 1 7 7 C 1.38813 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00120 * 169.22452 * 7 2 1 9 9 N 1.36940 * 119.99721 * 349.22357 * 7 2 1 10 10 C 1.47574 * 125.67995 * 347.03440 * 9 7 2 11 11 C 1.55211 * 105.02856 * 203.81728 * 10 9 7 12 12 C 1.53491 * 101.39298 * 324.66704 * 11 10 9 13 13 C 1.53696 * 111.85619 * 155.57176 * 12 11 10 14 14 C 1.54631 * 102.63879 * 154.27462 * 13 12 11 15 15 N 1.47154 * 107.45810 * 339.49428 * 14 13 12 16 16 C 1.34782 * 125.59667 * 178.97852 * 15 14 13 17 17 O 1.21590 * 119.99909 * 174.75659 * 16 15 14 18 18 C 1.47571 * 120.00203 * 354.75731 * 16 15 14 19 19 C 1.41758 * 120.01172 * 7.70176 * 18 16 15 20 20 C 1.35631 * 119.54226 * 179.75887 * 19 18 16 21 21 C 1.41178 * 119.50343 * 0.53628 * 20 19 18 22 22 N 1.32418 * 132.11541 * 179.73521 * 21 20 19 23 23 C 1.33594 * 109.22258 * 179.97438 * 22 21 20 24 24 C 1.35003 * 108.66308 * 359.97438 * 23 22 21 25 25 N 1.37014 * 107.13839 * 0.02562 * 24 23 22 26 26 C 1.35914 * 132.41576 * 180.02562 * 25 24 23 27 27 C 1.47748 * 108.80311 * 359.00953 * 15 14 13 28 28 C 1.47450 * 125.67419 * 167.01192 * 9 7 2 29 29 H 0.97007 * 119.99949 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.32605 * 322.70535 * 10 9 7 31 31 H 1.09002 * 110.33104 * 84.81871 * 10 9 7 32 32 H 1.09006 * 111.03941 * 206.64364 * 11 10 9 33 33 H 1.08999 * 111.04052 * 82.70156 * 11 10 9 34 34 H 1.09003 * 110.74023 * 36.02820 * 13 12 11 35 35 H 1.09005 * 110.87840 * 272.58213 * 13 12 11 36 36 H 1.08997 * 109.87369 * 219.98139 * 14 13 12 37 37 H 1.09004 * 109.86860 * 99.00169 * 14 13 12 38 38 H 1.08006 * 120.23358 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.25324 * 180.24578 * 20 19 18 40 40 H 1.08000 * 125.67243 * 180.02562 * 23 22 21 41 41 H 1.07993 * 126.43102 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.76016 * 359.97420 * 26 25 24 43 43 H 1.09001 * 110.39843 * 141.14629 * 27 15 14 44 44 H 1.08994 * 110.40178 * 263.43735 * 27 15 14 45 45 H 1.09009 * 109.99195 * 58.45934 * 28 9 7 46 46 H 1.08999 * 110.03040 * 297.14564 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6044 1.9847 -1.3947 5 1 1.3984 2.6811 0.5905 6 1 3.4902 1.4733 0.8041 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2105 -0.1743 9 7 1.3435 -2.3775 0.2228 10 6 -0.0346 -2.5017 0.7357 11 6 -0.1007 -3.9148 1.3742 12 6 0.8054 -4.7168 0.4299 13 6 1.3988 -5.9549 1.1208 14 6 1.6681 -6.9084 -0.0664 15 7 0.8248 -6.4657 -1.1882 16 6 0.7871 -7.0300 -2.4117 17 8 -0.0180 -6.6414 -3.2358 18 6 1.7229 -8.1193 -2.7510 19 6 2.5483 -8.6838 -1.7462 20 6 3.4014 -9.6880 -2.0676 21 6 3.4627 -10.1482 -3.4008 22 7 4.1903 -11.0891 -3.9829 23 6 3.8788 -11.1461 -5.2808 24 6 2.9294 -10.2214 -5.5382 25 7 2.6571 -9.5827 -4.3570 26 6 1.7976 -8.5807 -4.0336 27 6 0.0268 -5.3008 -0.7533 28 6 1.8832 -3.7297 -0.0109 29 1 -0.4850 0.8401 0.0004 30 1 -0.2292 -1.7369 1.4876 31 1 -0.7516 -2.4195 -0.0813 32 1 -1.1194 -4.3025 1.3620 33 1 0.3006 -3.9055 2.3876 34 1 0.6792 -6.3930 1.8125 35 1 2.3274 -5.7056 1.6343 36 1 1.4081 -7.9296 0.2121 37 1 2.7192 -6.8582 -0.3508 38 1 2.4950 -8.3198 -0.7307 39 1 4.0326 -10.1291 -1.3103 40 1 4.3136 -11.8203 -6.0038 41 1 2.4706 -10.0226 -6.4954 42 1 1.1696 -8.1458 -4.7971 43 1 -0.0469 -4.5691 -1.5579 44 1 -0.9669 -5.6177 -0.4370 45 1 2.7877 -3.8771 0.5794 46 1 2.1030 -3.8660 -1.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041780726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:44 Heat of formation + Delta-G solvation = 118.370035 kcal Electronic energy + Delta-G solvation = -29326.736847 eV Core-core repulsion = 25412.676075 eV Total energy + Delta-G solvation = -3914.060772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.14093 -40.67191 -38.75658 -37.13088 -35.93074 -34.07321 -32.79596 -31.10044 -30.54345 -29.61885 -29.04829 -28.13756 -26.07133 -24.84668 -24.00164 -23.28334 -22.35159 -22.03161 -20.41493 -20.04573 -19.01194 -18.41602 -17.44702 -16.83303 -16.35481 -16.12059 -16.04072 -15.75214 -14.96780 -14.90393 -14.71248 -14.56924 -14.15873 -13.89454 -13.82380 -13.59941 -13.38038 -13.01948 -12.57821 -12.26021 -12.21440 -11.99488 -11.70139 -11.60393 -11.48330 -11.34777 -11.16854 -10.84032 -10.81480 -10.47330 -10.31071 -10.20914 -10.07820 -9.92548 -9.85845 -9.70285 -9.22597 -8.72658 -8.59438 -8.19721 -6.80814 -5.77922 -3.10791 0.23509 0.75719 2.09519 2.27789 2.83960 2.89892 3.35001 3.38276 3.43863 3.45402 3.88384 4.09243 4.22822 4.37333 4.43886 4.50032 4.57957 4.70275 4.83680 4.97713 5.07571 5.10521 5.14674 5.20808 5.32261 5.46027 5.49982 5.57283 5.68000 5.70621 5.71953 5.83569 5.88294 6.03813 6.06959 6.08313 6.18374 6.26069 6.26826 6.45018 6.51870 6.63068 6.68743 6.76694 7.38229 7.40969 7.50204 7.55911 7.74327 7.97411 8.22713 9.16109 9.78140 10.46444 11.35650 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002510 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.127363 B =11151.178954 C =11602.643186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.074 0.926 9 N -0.601 5.601 10 C 0.173 3.827 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.119 4.119 14 C 0.087 3.913 15 N -0.604 5.604 16 C 0.583 3.417 17 O -0.536 6.536 18 C -0.151 4.151 19 C -0.117 4.117 20 C -0.085 4.085 21 C 0.231 3.769 22 N -0.494 5.494 23 C 0.033 3.967 24 C -0.097 4.097 25 N -0.367 5.367 26 C 0.131 3.869 27 C 0.128 3.872 28 C 0.151 3.849 29 H 0.253 0.747 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.180 0.820 39 H 0.157 0.843 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.178 0.822 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -21.593 -2.433 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.092 0.908 9 N -0.328 5.328 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.036 4.036 15 N -0.337 5.337 16 C 0.372 3.628 17 O -0.415 6.415 18 C -0.157 4.157 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.013 4.013 22 N -0.214 5.214 23 C -0.117 4.117 24 C -0.226 4.226 25 N -0.039 5.039 26 C 0.005 3.995 27 C 0.007 3.993 28 C 0.026 3.974 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.197 0.803 39 H 0.174 0.826 40 H 0.200 0.800 41 H 0.203 0.797 42 H 0.196 0.804 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.369 -21.706 -2.671 22.127 hybrid contribution -0.103 1.352 -0.721 1.535 sum 3.266 -20.354 -3.391 20.891 Atomic orbital electron populations 1.69952 1.04995 1.25335 1.55901 1.24842 0.95577 0.97865 1.01901 0.86195 0.78726 0.83438 0.77718 1.21490 1.21571 1.20709 1.18953 0.91203 0.82889 1.42984 0.90831 1.44600 1.12832 0.99689 1.75654 1.21434 0.86571 0.90783 0.96403 1.22783 0.97523 0.98693 0.97968 1.21597 0.97247 0.94502 0.94900 1.22629 1.02341 0.94728 0.96045 1.22684 0.95335 0.98274 0.87258 1.48380 1.42488 1.32164 1.10651 1.17269 0.83040 0.81515 0.81007 1.90826 1.38904 1.63678 1.48048 1.19320 1.02143 1.01066 0.93178 1.22625 0.93977 0.95137 1.02224 1.20251 1.00835 0.97682 0.91712 1.21265 0.93133 0.95041 0.91873 1.70762 1.24903 1.18528 1.07211 1.22569 0.96812 0.99090 0.93212 1.22803 1.07752 1.02122 0.89937 1.42832 1.26652 1.24052 1.10357 1.21695 0.91878 0.88019 0.97919 1.22157 0.93607 0.86220 0.97348 1.21070 0.93483 0.85621 0.97268 0.93651 0.92027 0.95092 0.91735 0.91425 0.90188 0.89315 0.90392 0.90124 0.80338 0.82591 0.79989 0.79721 0.80444 0.89451 0.91111 0.95525 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.86 55.49 0.60 -25.98 16 2 C 0.00 -0.13 5.37 -17.43 -0.09 -0.22 16 3 Si 0.91 21.87 29.57 -169.99 -5.03 16.85 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.37 10.22 -15.06 -0.15 -6.52 16 8 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 9 N -0.60 -14.81 3.41 -170.43 -0.58 -15.39 16 10 C 0.17 3.95 5.36 -2.28 -0.01 3.94 16 11 C -0.13 -2.15 6.06 -25.31 -0.15 -2.30 16 12 C -0.08 -1.23 0.61 -153.96 -0.09 -1.32 16 13 C -0.12 -1.25 5.98 -25.51 -0.15 -1.40 16 14 C 0.09 0.82 4.85 -2.83 -0.01 0.80 16 15 N -0.60 -7.94 3.34 -175.77 -0.59 -8.53 16 16 C 0.58 8.28 7.79 -12.45 -0.10 8.18 16 17 O -0.54 -9.43 16.62 5.29 0.09 -9.34 16 18 C -0.15 -1.73 5.83 -105.37 -0.61 -2.34 16 19 C -0.12 -1.07 8.54 -39.17 -0.33 -1.41 16 20 C -0.08 -0.80 10.09 -39.40 -0.40 -1.20 16 21 C 0.23 2.72 7.81 -155.93 -1.22 1.50 16 22 N -0.49 -6.12 11.31 -12.72 -0.14 -6.26 16 23 C 0.03 0.32 11.82 -17.93 -0.21 0.11 16 24 C -0.10 -0.87 11.76 -16.38 -0.19 -1.06 16 25 N -0.37 -4.02 2.93 -62.30 -0.18 -4.21 16 26 C 0.13 1.43 10.49 -16.37 -0.17 1.26 16 27 C 0.13 1.95 5.73 -3.25 -0.02 1.93 16 28 C 0.15 2.95 6.45 -3.70 -0.02 2.93 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.06 1.57 7.21 -51.93 -0.37 1.20 16 31 H 0.03 0.78 7.98 -51.93 -0.41 0.37 16 32 H 0.06 0.93 7.77 -51.93 -0.40 0.53 16 33 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.09 0.87 7.64 -51.93 -0.40 0.48 16 36 H 0.08 0.53 6.78 -51.93 -0.35 0.18 16 37 H 0.08 0.68 6.62 -51.93 -0.34 0.34 16 38 H 0.18 1.25 2.80 -57.10 -0.16 1.09 16 39 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.18 1.76 7.58 -52.48 -0.40 1.37 16 43 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 44 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 45 H 0.03 0.50 7.56 -51.92 -0.39 0.11 16 46 H 0.02 0.46 7.80 -51.93 -0.41 0.05 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -34.67 366.10 -10.38 -45.05 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.11 Total: -0.57 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.95 Total: 2.86 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.89 Total: -60.36 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.67 -10.38 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041780726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.417 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds