Wall clock time and date at job start Sat Apr 11 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47335 * 239.99460 * 3 2 1 5 5 H 1.48505 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47336 * 120.00040 * 3 2 1 7 7 C 1.38810 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.47137 * 125.59820 * 359.97438 * 9 7 2 11 11 C 1.54588 * 107.32896 * 179.08864 * 10 9 7 12 12 C 1.53715 * 102.94539 * 339.03486 * 11 10 9 13 13 C 1.52880 * 111.74828 * 273.44437 * 12 11 10 14 14 C 1.54752 * 104.40625 * 237.43067 * 13 12 11 15 15 N 1.48272 * 104.68050 * 23.63763 * 14 13 12 16 16 C 1.34771 * 127.72407 * 141.28798 * 15 14 13 17 17 O 1.21589 * 120.00391 * 353.90715 * 16 15 14 18 18 C 1.47576 * 119.99868 * 173.90921 * 16 15 14 19 19 C 1.41759 * 120.01117 * 338.86768 * 18 16 15 20 20 C 1.35637 * 119.53607 * 179.69322 * 19 18 16 21 21 C 1.41170 * 119.50743 * 0.59904 * 20 19 18 22 22 N 1.32418 * 132.11872 * 179.70400 * 21 20 19 23 23 C 1.33599 * 109.22649 * 179.97438 * 22 21 20 24 24 C 1.35003 * 108.65748 * 359.97438 * 23 22 21 25 25 N 1.37009 * 107.14318 * 0.02562 * 24 23 22 26 26 C 1.35919 * 132.41489 * 180.02562 * 25 24 23 27 27 C 1.48494 * 104.55116 * 321.28317 * 15 14 13 28 28 C 1.47703 * 125.61202 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.87726 * 59.65111 * 10 9 7 31 31 H 1.08996 * 109.99261 * 298.58554 * 10 9 7 32 32 H 1.09001 * 110.74946 * 97.44769 * 11 10 9 33 33 H 1.08992 * 110.74873 * 220.62248 * 11 10 9 34 34 H 1.08995 * 110.44712 * 356.16623 * 13 12 11 35 35 H 1.08997 * 110.44211 * 118.57447 * 13 12 11 36 36 H 1.08998 * 110.39512 * 142.43847 * 14 13 12 37 37 H 1.09002 * 110.39450 * 264.72091 * 14 13 12 38 38 H 1.07996 * 120.23438 * 359.97438 * 19 18 16 39 39 H 1.08006 * 120.24304 * 180.27007 * 20 19 18 40 40 H 1.07992 * 125.66878 * 180.02562 * 23 22 21 41 41 H 1.07994 * 126.42676 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.75757 * 359.97438 * 26 25 24 43 43 H 1.09000 * 110.47602 * 279.56975 * 27 15 14 44 44 H 1.09001 * 110.46892 * 156.95532 * 27 15 14 45 45 H 1.09003 * 110.38652 * 321.37176 * 28 9 7 46 46 H 1.08997 * 110.38669 * 83.75642 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5318 0.0005 11 6 -0.4529 -4.0452 -0.0229 12 6 0.8459 -4.6581 -0.5707 13 6 0.8604 -4.6821 -2.0993 14 6 1.0604 -6.1738 -2.4591 15 7 0.5698 -6.9156 -1.2727 16 6 -0.1316 -8.0662 -1.2516 17 8 -0.5268 -8.5566 -2.2917 18 6 -0.4199 -8.7312 0.0340 19 6 0.3769 -8.4497 1.1721 20 6 0.0995 -9.0616 2.3504 21 6 -0.9709 -9.9792 2.4223 22 7 -1.4504 -10.7081 3.4184 23 6 -2.4865 -11.4275 2.9781 24 6 -2.6771 -11.1542 1.6698 25 7 -1.7246 -10.2393 1.3054 26 6 -1.4510 -9.6210 0.1263 27 6 1.0241 -6.1070 -0.1130 28 6 1.9356 -3.7333 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5581 -2.0525 -0.8840 31 1 -0.5574 -2.0804 0.9000 32 1 -0.6592 -4.4124 0.9824 33 1 -1.2899 -4.2555 -0.6886 34 1 -0.0882 -4.3188 -2.4947 35 1 1.6861 -4.0821 -2.4817 36 1 0.4731 -6.4343 -3.3396 37 1 2.1159 -6.3848 -2.6314 38 1 1.1963 -7.7496 1.1027 39 1 0.6965 -8.8523 3.2259 40 1 -3.0743 -12.1129 3.5704 41 1 -3.4372 -11.5779 1.0303 42 1 -2.0533 -9.8357 -0.7440 43 1 2.0719 -6.3112 0.1071 44 1 0.4035 -6.3101 0.7598 45 1 2.8194 -3.7495 -0.6373 46 1 2.1936 -4.0332 1.0162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041780732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:48 Heat of formation + Delta-G solvation = 108.395172 kcal Electronic energy + Delta-G solvation = -29431.927015 eV Core-core repulsion = 25517.433700 eV Total energy + Delta-G solvation = -3914.493315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.14115 -40.55135 -38.75510 -37.17850 -35.80667 -34.08507 -32.67415 -31.35452 -30.07846 -29.48885 -29.04933 -28.49077 -25.81846 -24.92671 -23.96276 -23.10144 -22.50905 -22.05786 -20.32478 -19.97475 -18.95456 -18.34805 -17.48328 -16.94620 -16.49681 -16.20625 -15.97534 -15.66800 -14.93988 -14.81624 -14.75632 -14.34828 -14.21336 -14.07348 -13.85478 -13.58328 -13.22079 -12.84899 -12.64369 -12.26067 -12.15279 -12.04145 -11.97423 -11.59049 -11.43843 -11.14083 -11.07191 -10.91647 -10.75638 -10.46864 -10.34221 -10.22337 -10.06186 -9.99006 -9.80985 -9.68127 -9.23105 -8.80828 -8.63146 -8.21232 -6.87736 -5.74891 -3.08741 0.22995 0.74993 2.07333 2.25648 2.78013 2.84540 3.30134 3.37775 3.42409 3.43635 3.87941 4.07798 4.21577 4.35659 4.44969 4.53999 4.66664 4.79006 4.90743 4.97376 5.08522 5.10721 5.25963 5.34840 5.44741 5.47662 5.51354 5.55427 5.62262 5.71497 5.76618 5.82209 5.83906 5.91402 6.04476 6.19397 6.26054 6.33107 6.35156 6.43759 6.53181 6.62262 6.63657 6.75330 7.36157 7.50846 7.51727 7.57897 7.78874 7.89637 8.21358 9.17806 9.78113 10.43530 11.36507 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002590 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.171346 B =10807.212704 C =11591.090073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.131 4.131 12 C -0.086 4.086 13 C -0.110 4.110 14 C 0.106 3.894 15 N -0.610 5.610 16 C 0.591 3.409 17 O -0.544 6.544 18 C -0.151 4.151 19 C -0.090 4.090 20 C -0.082 4.082 21 C 0.233 3.767 22 N -0.492 5.492 23 C 0.034 3.966 24 C -0.097 4.097 25 N -0.367 5.367 26 C 0.129 3.871 27 C 0.103 3.897 28 C 0.151 3.849 29 H 0.253 0.747 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.177 0.823 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -20.693 0.706 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.016 4.016 15 N -0.342 5.342 16 C 0.380 3.620 17 O -0.423 6.423 18 C -0.157 4.157 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.011 4.011 22 N -0.212 5.212 23 C -0.116 4.116 24 C -0.226 4.226 25 N -0.039 5.039 26 C 0.004 3.996 27 C -0.019 4.019 28 C 0.024 3.976 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.200 0.800 41 H 0.203 0.797 42 H 0.194 0.806 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.176 -20.869 0.950 21.004 hybrid contribution -0.037 0.925 -0.739 1.184 sum -2.213 -19.945 0.211 20.068 Atomic orbital electron populations 1.69951 1.04886 1.25173 1.56871 1.24794 0.95695 0.97665 1.02186 0.86214 0.78460 0.83254 0.77893 1.21181 1.21644 1.21171 1.18986 0.90368 0.82357 1.44066 0.90491 1.44501 1.01558 0.99654 1.87231 1.21186 0.84272 0.87944 1.01060 1.22842 0.95089 0.99699 0.99342 1.21745 0.98989 0.92661 0.95422 1.22332 1.03766 0.93939 0.94799 1.22547 0.99189 0.91311 0.88521 1.48865 1.53350 1.21980 1.10024 1.17197 0.77709 0.79518 0.87590 1.90804 1.52654 1.64995 1.33823 1.19287 0.99099 1.01491 0.95803 1.21659 0.99950 0.99026 0.90765 1.20233 0.95292 0.95005 0.99658 1.21209 0.96618 1.00870 0.82429 1.70770 1.12424 1.10831 1.27155 1.22576 0.96350 1.00347 0.92341 1.22787 0.99645 1.01110 0.99088 1.42830 1.23156 1.28615 1.09341 1.21622 0.97396 0.92408 0.88205 1.22755 0.99856 0.90161 0.89171 1.21445 0.93335 0.85909 0.96875 0.93697 0.93638 0.93994 0.92479 0.92232 0.90724 0.89511 0.89984 0.90824 0.82285 0.82393 0.79968 0.79733 0.80629 0.90185 0.89247 0.93994 0.96171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.34 10.31 55.49 0.57 -25.77 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.08 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.60 -14.27 3.41 -170.21 -0.58 -14.85 16 10 C 0.18 4.12 5.34 -2.86 -0.02 4.10 16 11 C -0.13 -2.25 5.83 -25.53 -0.15 -2.40 16 12 C -0.09 -1.28 0.82 -153.73 -0.13 -1.40 16 13 C -0.11 -1.55 6.28 -25.87 -0.16 -1.71 16 14 C 0.11 1.28 7.10 -2.14 -0.02 1.26 16 15 N -0.61 -7.46 3.33 -170.75 -0.57 -8.03 16 16 C 0.59 7.70 7.72 -12.45 -0.10 7.60 16 17 O -0.54 -8.54 16.72 5.29 0.09 -8.46 16 18 C -0.15 -1.66 5.72 -105.37 -0.60 -2.26 16 19 C -0.09 -0.87 7.98 -39.17 -0.31 -1.18 16 20 C -0.08 -0.81 10.09 -39.40 -0.40 -1.21 16 21 C 0.23 2.76 7.81 -155.93 -1.22 1.54 16 22 N -0.49 -6.17 11.31 -12.72 -0.14 -6.31 16 23 C 0.03 0.32 11.82 -17.93 -0.21 0.11 16 24 C -0.10 -0.84 11.75 -16.39 -0.19 -1.04 16 25 N -0.37 -3.92 2.93 -62.31 -0.18 -4.10 16 26 C 0.13 1.34 10.48 -16.36 -0.17 1.17 16 27 C 0.10 1.18 4.18 -2.95 -0.01 1.16 16 28 C 0.15 2.72 6.07 -2.91 -0.02 2.70 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 1.17 7.39 -51.93 -0.38 0.78 16 31 H 0.04 1.08 7.49 -51.93 -0.39 0.70 16 32 H 0.06 0.92 7.73 -51.93 -0.40 0.51 16 33 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 34 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 35 H 0.09 1.28 7.55 -51.93 -0.39 0.89 16 36 H 0.08 1.02 7.85 -51.93 -0.41 0.61 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.16 1.28 4.76 -52.49 -0.25 1.03 16 39 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.18 1.56 7.71 -52.48 -0.40 1.16 16 43 H 0.08 0.77 7.59 -51.93 -0.39 0.37 16 44 H 0.09 0.96 5.21 -51.93 -0.27 0.69 16 45 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 46 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -33.21 366.39 -10.41 -43.62 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.14 Total: -0.03 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.95 Total: 1.92 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.90 Total: -59.06 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.21 -10.41 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041780732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.010 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds