Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47335 * 239.99460 * 3 2 1 5 5 H 1.48505 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47336 * 120.00040 * 3 2 1 7 7 C 1.38810 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.47137 * 125.59820 * 359.97438 * 9 7 2 11 11 C 1.54588 * 107.32896 * 179.08864 * 10 9 7 12 12 C 1.53715 * 102.94539 * 339.03486 * 11 10 9 13 13 C 1.52880 * 111.74828 * 273.44437 * 12 11 10 14 14 C 1.54752 * 104.40625 * 237.43067 * 13 12 11 15 15 N 1.48272 * 104.68050 * 23.63763 * 14 13 12 16 16 C 1.34771 * 127.72407 * 141.28798 * 15 14 13 17 17 O 1.21589 * 120.00391 * 353.90715 * 16 15 14 18 18 C 1.47576 * 119.99868 * 173.90921 * 16 15 14 19 19 C 1.41759 * 120.01117 * 338.86768 * 18 16 15 20 20 C 1.35637 * 119.53607 * 179.69322 * 19 18 16 21 21 C 1.41170 * 119.50743 * 0.59904 * 20 19 18 22 22 N 1.32418 * 132.11872 * 179.70400 * 21 20 19 23 23 C 1.33599 * 109.22649 * 179.97438 * 22 21 20 24 24 C 1.35003 * 108.65748 * 359.97438 * 23 22 21 25 25 N 1.37009 * 107.14318 * 0.02562 * 24 23 22 26 26 C 1.35919 * 132.41489 * 180.02562 * 25 24 23 27 27 C 1.48494 * 104.55116 * 321.28317 * 15 14 13 28 28 C 1.47703 * 125.61202 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.87726 * 59.65111 * 10 9 7 31 31 H 1.08996 * 109.99261 * 298.58554 * 10 9 7 32 32 H 1.09001 * 110.74946 * 97.44769 * 11 10 9 33 33 H 1.08992 * 110.74873 * 220.62248 * 11 10 9 34 34 H 1.08995 * 110.44712 * 356.16623 * 13 12 11 35 35 H 1.08997 * 110.44211 * 118.57447 * 13 12 11 36 36 H 1.08998 * 110.39512 * 142.43847 * 14 13 12 37 37 H 1.09002 * 110.39450 * 264.72091 * 14 13 12 38 38 H 1.07996 * 120.23438 * 359.97438 * 19 18 16 39 39 H 1.08006 * 120.24304 * 180.27007 * 20 19 18 40 40 H 1.07992 * 125.66878 * 180.02562 * 23 22 21 41 41 H 1.07994 * 126.42676 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.75757 * 359.97438 * 26 25 24 43 43 H 1.09000 * 110.47602 * 279.56975 * 27 15 14 44 44 H 1.09001 * 110.46892 * 156.95532 * 27 15 14 45 45 H 1.09003 * 110.38652 * 321.37176 * 28 9 7 46 46 H 1.08997 * 110.38669 * 83.75642 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1387 -2.5318 0.0005 11 6 -0.4529 -4.0452 -0.0229 12 6 0.8459 -4.6581 -0.5707 13 6 0.8604 -4.6821 -2.0993 14 6 1.0604 -6.1738 -2.4591 15 7 0.5698 -6.9156 -1.2727 16 6 -0.1316 -8.0662 -1.2516 17 8 -0.5268 -8.5566 -2.2917 18 6 -0.4199 -8.7312 0.0340 19 6 0.3769 -8.4497 1.1721 20 6 0.0995 -9.0616 2.3504 21 6 -0.9709 -9.9792 2.4223 22 7 -1.4504 -10.7081 3.4184 23 6 -2.4865 -11.4275 2.9781 24 6 -2.6771 -11.1542 1.6698 25 7 -1.7246 -10.2393 1.3054 26 6 -1.4510 -9.6210 0.1263 27 6 1.0241 -6.1070 -0.1130 28 6 1.9356 -3.7333 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5581 -2.0525 -0.8840 31 1 -0.5574 -2.0804 0.9000 32 1 -0.6592 -4.4124 0.9824 33 1 -1.2899 -4.2555 -0.6886 34 1 -0.0882 -4.3188 -2.4947 35 1 1.6861 -4.0821 -2.4817 36 1 0.4731 -6.4343 -3.3396 37 1 2.1159 -6.3848 -2.6314 38 1 1.1963 -7.7496 1.1027 39 1 0.6965 -8.8523 3.2259 40 1 -3.0743 -12.1129 3.5704 41 1 -3.4372 -11.5779 1.0303 42 1 -2.0533 -9.8357 -0.7440 43 1 2.0719 -6.3112 0.1071 44 1 0.4035 -6.3101 0.7598 45 1 2.8194 -3.7495 -0.6373 46 1 2.1936 -4.0332 1.0162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041780732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 89.263290 kcal Electronic energy + Delta-G solvation = -29432.756636 eV Core-core repulsion = 25517.433700 eV Total energy + Delta-G solvation = -3915.322936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.87925 -41.60747 -39.94840 -38.00586 -37.21527 -34.88759 -34.34732 -32.41115 -31.46134 -30.64934 -30.06468 -29.65803 -27.30538 -26.10119 -25.11621 -24.04741 -23.55188 -22.80170 -22.09031 -20.90047 -20.16767 -19.21684 -18.76439 -18.29214 -17.37112 -17.00929 -17.00481 -16.67569 -16.62796 -15.77983 -15.69811 -15.62127 -15.57442 -15.19048 -14.86577 -14.42803 -14.27345 -14.13507 -13.87143 -13.81582 -13.27807 -13.18171 -12.93840 -12.88199 -12.81904 -12.69293 -12.37373 -12.27490 -12.06657 -12.03982 -11.77648 -11.52107 -11.37220 -11.27901 -11.23883 -11.14725 -10.64578 -10.03488 -9.76146 -8.94030 -8.82798 -7.80423 -5.14553 -0.54103 0.01279 1.30261 1.45969 1.48545 1.50812 1.56858 1.89721 2.01114 2.49968 2.53221 3.14418 3.25663 3.37692 3.47537 3.50156 3.63267 3.67981 3.75028 3.87810 3.93140 4.24239 4.28724 4.33438 4.38304 4.40216 4.47284 4.54737 4.63060 4.72753 4.79398 4.83185 4.85392 4.93375 4.97112 4.99736 5.03647 5.10828 5.22817 5.32528 5.35529 5.45083 5.51748 5.59682 5.71005 5.82369 5.89350 6.24102 6.39674 6.77229 6.92272 7.14997 7.83910 8.47800 9.29751 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002590 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.171346 B =10807.212704 C =11591.090073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.190 3.810 11 C -0.117 4.117 12 C -0.075 4.075 13 C -0.108 4.108 14 C 0.114 3.886 15 N -0.609 5.609 16 C 0.593 3.407 17 O -0.576 6.576 18 C -0.160 4.160 19 C -0.085 4.085 20 C -0.086 4.086 21 C 0.207 3.793 22 N -0.526 5.526 23 C 0.020 3.980 24 C -0.092 4.092 25 N -0.373 5.373 26 C 0.131 3.869 27 C 0.111 3.889 28 C 0.147 3.853 29 H 0.243 0.757 30 H 0.004 0.996 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.210 0.790 41 H 0.219 0.781 42 H 0.187 0.813 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 -22.779 1.031 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.362 4.362 8 H 0.104 0.896 9 N -0.350 5.350 10 C 0.065 3.935 11 C -0.156 4.156 12 C -0.077 4.077 13 C -0.147 4.147 14 C -0.008 4.008 15 N -0.340 5.340 16 C 0.383 3.617 17 O -0.457 6.457 18 C -0.167 4.167 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.037 4.037 22 N -0.246 5.246 23 C -0.129 4.129 24 C -0.221 4.221 25 N -0.046 5.046 26 C 0.005 3.995 27 C -0.011 4.011 28 C 0.022 3.978 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.195 0.805 39 H 0.193 0.807 40 H 0.227 0.773 41 H 0.236 0.764 42 H 0.204 0.796 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.919 -22.992 1.288 23.046 hybrid contribution -0.453 1.515 -0.830 1.786 sum -1.372 -21.477 0.459 21.525 Atomic orbital electron populations 1.70191 1.06327 1.25020 1.58810 1.25602 0.96475 1.00953 1.03175 0.85219 0.77099 0.79179 0.78251 1.20285 1.22704 1.20301 1.19430 0.91074 0.83645 1.42101 0.89571 1.44788 1.02083 1.01223 1.86950 1.20868 0.84076 0.91419 0.97156 1.22675 0.96640 0.95517 1.00731 1.21618 0.96056 0.94327 0.95701 1.22253 1.02586 0.95525 0.94305 1.22509 1.00529 0.89461 0.88327 1.48855 1.53090 1.21817 1.10263 1.17408 0.77022 0.79449 0.87794 1.90790 1.53898 1.65910 1.35100 1.19203 1.00014 1.02067 0.95385 1.21759 1.00011 0.99142 0.89961 1.20486 0.95060 0.94614 1.00457 1.21597 0.97564 1.01662 0.82831 1.70738 1.13796 1.11905 1.28163 1.23157 0.96030 1.00538 0.93173 1.23444 0.99363 0.99916 0.99347 1.42994 1.23487 1.28952 1.09159 1.21795 0.97328 0.91957 0.88402 1.22789 1.02170 0.87163 0.88993 1.21684 0.94343 0.83664 0.98139 0.94738 0.97750 0.98106 0.90811 0.91786 0.92506 0.90193 0.90534 0.88406 0.80493 0.80726 0.77290 0.76418 0.79577 0.86893 0.87936 0.92867 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 10.31 21.65 0.22 -56.63 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.23 -12.40 10.28 84.03 0.86 -11.54 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -29.60 3.41 -692.43 -2.36 -31.95 16 10 C 0.19 8.98 5.34 86.80 0.46 9.44 16 11 C -0.12 -3.93 5.83 31.38 0.18 -3.75 16 12 C -0.08 -2.07 0.82 -51.67 -0.04 -2.11 16 13 C -0.11 -2.90 6.28 31.15 0.20 -2.71 16 14 C 0.11 2.45 7.10 86.64 0.61 3.06 16 15 N -0.61 -13.09 3.33 -812.40 -2.70 -15.79 16 16 C 0.59 14.09 7.72 86.71 0.67 14.76 16 17 O -0.58 -17.21 16.72 -4.00 -0.07 -17.27 16 18 C -0.16 -3.17 5.72 -20.35 -0.12 -3.28 16 19 C -0.09 -1.39 7.98 22.54 0.18 -1.21 16 20 C -0.09 -1.52 10.09 22.39 0.23 -1.30 16 21 C 0.21 4.60 7.81 134.16 1.05 5.64 16 22 N -0.53 -12.53 11.31 -194.15 -2.20 -14.72 16 23 C 0.02 0.34 11.82 83.68 0.99 1.33 16 24 C -0.09 -1.40 11.75 83.14 0.98 -0.42 16 25 N -0.37 -7.27 2.93 -351.04 -1.03 -8.30 16 26 C 0.13 2.46 10.48 83.66 0.88 3.33 16 27 C 0.11 2.10 4.18 85.99 0.36 2.46 16 28 C 0.15 4.95 6.07 86.46 0.52 5.48 16 29 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.00 0.23 7.39 -2.39 -0.02 0.21 16 31 H 0.00 0.04 7.49 -2.39 -0.02 0.02 16 32 H 0.07 2.23 7.73 -2.39 -0.02 2.22 16 33 H 0.06 2.09 7.71 -2.39 -0.02 2.07 16 34 H 0.06 1.72 7.51 -2.39 -0.02 1.70 16 35 H 0.08 2.26 7.55 -2.39 -0.02 2.24 16 36 H 0.08 1.78 7.85 -2.39 -0.02 1.76 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.18 2.10 4.76 -2.91 -0.01 2.08 16 39 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.21 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.19 2.98 7.71 -2.91 -0.02 2.96 16 43 H 0.11 1.54 7.59 -2.39 -0.02 1.52 16 44 H 0.10 1.77 5.21 -2.39 -0.01 1.76 16 45 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 46 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 Total: -1.00 -75.16 366.39 3.38 -71.78 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.01 Total: 10.20 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 8.48 Total: 15.82 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -8.07 Total: -127.41 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.07 Total: -17.27 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.16 3.38 -71.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041780732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.045 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds