Wall clock time and date at job start Sat Apr 11 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99581 * 2 1 4 4 H 1.48503 * 109.46839 * 274.99695 * 3 2 1 5 5 H 1.48503 * 109.47528 * 34.99573 * 3 2 1 6 6 H 1.48499 * 109.47183 * 154.99778 * 3 2 1 7 7 C 1.38811 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99531 * 185.17842 * 7 2 1 9 9 N 1.36925 * 120.00087 * 5.17387 * 7 2 1 10 10 C 1.48163 * 126.39983 * 355.09710 * 9 7 2 11 11 C 1.55303 * 107.04095 * 174.97527 * 10 9 7 12 12 C 1.53697 * 101.81720 * 337.55611 * 11 10 9 13 13 H 1.09001 * 111.11276 * 281.39848 * 12 11 10 14 14 C 1.51980 * 114.99708 * 153.45668 * 12 11 10 15 15 C 1.53881 * 107.29157 * 184.57214 * 14 12 11 16 16 N 1.46595 * 110.71590 * 51.80970 * 15 14 12 17 17 C 1.34783 * 119.75478 * 132.25613 * 16 15 14 18 18 O 1.21631 * 119.99871 * 354.13991 * 17 16 15 19 19 C 1.47257 * 119.99602 * 174.13918 * 17 16 15 20 20 C 1.38931 * 120.90916 * 306.36124 * 19 17 16 21 21 C 1.39771 * 119.19193 * 180.02562 * 20 19 17 22 22 C 1.35067 * 121.27306 * 0.02562 * 21 20 19 23 23 N 1.36221 * 121.76937 * 359.96269 * 22 21 20 24 24 N 1.40091 * 132.48382 * 179.97438 * 23 22 21 25 25 C 1.31351 * 108.87774 * 180.02562 * 24 23 22 26 26 C 1.38878 * 108.95185 * 359.97438 * 25 24 23 27 27 C 1.37185 * 120.19406 * 359.73653 * 23 22 21 28 28 C 1.47796 * 120.49129 * 312.25708 * 16 15 14 29 29 C 1.45504 * 126.39841 * 175.07453 * 9 7 2 30 30 H 1.08998 * 109.56961 * 93.39757 * 29 9 7 31 31 H 0.96999 * 120.00480 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.91985 * 294.32533 * 10 9 7 33 33 H 1.09003 * 109.91726 * 55.42910 * 10 9 7 34 34 H 1.08998 * 110.95944 * 95.69062 * 11 10 9 35 35 H 1.09001 * 110.95816 * 219.39141 * 11 10 9 36 36 H 1.09000 * 109.89319 * 304.01356 * 14 12 11 37 37 H 1.09000 * 109.89467 * 65.12319 * 14 12 11 38 38 H 1.09005 * 109.23080 * 172.13186 * 15 14 12 39 39 H 1.09001 * 109.22870 * 291.48933 * 15 14 12 40 40 H 1.08009 * 120.40422 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.35839 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.11076 * 179.97438 * 22 21 20 43 43 H 1.08005 * 125.51948 * 180.02562 * 25 24 23 44 44 H 1.07997 * 126.21879 * 180.02562 * 26 25 24 45 45 H 1.09008 * 110.06156 * 292.04074 * 28 16 15 46 46 H 1.08994 * 110.06817 * 170.47563 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5043 2.6200 0.8030 6 1 3.5965 1.4122 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0870 -1.2039 0.0850 9 7 1.3299 -2.3856 -0.1059 10 6 -0.1419 -2.5548 -0.1265 11 6 -0.4234 -4.0592 -0.3900 12 6 0.8834 -4.5111 -1.0611 13 1 0.9103 -4.2126 -2.1090 14 6 1.2167 -5.9842 -0.8910 15 6 2.6002 -6.2161 -1.5236 16 7 3.5777 -5.2582 -0.9984 17 6 4.7804 -5.6944 -0.5742 18 8 5.0128 -6.8874 -0.5277 19 6 5.8128 -4.7266 -0.1670 20 6 6.1996 -3.6965 -1.0152 21 6 7.1835 -2.7983 -0.5924 22 6 7.7634 -2.9141 0.6219 23 7 7.4189 -3.9061 1.4896 24 7 7.8634 -4.2336 2.7771 25 6 7.2112 -5.2945 3.1948 26 6 6.3234 -5.6967 2.2055 27 6 6.4561 -4.8206 1.1449 28 6 3.2543 -3.8176 -0.9306 29 6 1.9172 -3.7119 -0.2202 30 1 2.0052 -4.1589 0.7700 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5630 -2.2611 0.8349 33 1 -0.5743 -1.9481 -0.9222 34 1 -0.5871 -4.5949 0.5450 35 1 -1.2716 -4.1852 -1.0629 36 1 1.2463 -6.2378 0.1686 37 1 0.4698 -6.5945 -1.3987 38 1 2.9331 -7.2292 -1.2976 39 1 2.5253 -6.0965 -2.6045 40 1 5.7461 -3.5915 -1.9899 41 1 7.4859 -1.9962 -1.2495 42 1 8.5204 -2.2008 0.9129 43 1 7.3435 -5.7755 4.1527 44 1 5.6491 -6.5387 2.2572 45 1 3.1772 -3.4040 -1.9362 46 1 4.0211 -3.2884 -0.3651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042132348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:12 Heat of formation + Delta-G solvation = 95.135564 kcal Electronic energy + Delta-G solvation = -30476.649720 eV Core-core repulsion = 26561.581425 eV Total energy + Delta-G solvation = -3915.068295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.98942 -41.46811 -39.73735 -38.07289 -36.71603 -34.86217 -33.99131 -32.84951 -31.73135 -30.89235 -30.22144 -29.47361 -26.73445 -26.03314 -24.85207 -23.75920 -23.53735 -22.56977 -21.79017 -21.37608 -20.37685 -18.74208 -18.54275 -18.33366 -17.50509 -17.05786 -16.81502 -16.58588 -16.50788 -16.12493 -15.77650 -15.67073 -15.26612 -15.01178 -14.78866 -14.61065 -14.16918 -13.92265 -13.79967 -13.55166 -13.30020 -13.20286 -13.07934 -13.04100 -12.80272 -12.72996 -12.48220 -12.10403 -12.00307 -11.96736 -11.81454 -11.52837 -11.49231 -11.32805 -11.26427 -10.82902 -10.67186 -10.43182 -9.76836 -8.88758 -8.69371 -7.82689 -5.17707 -0.57688 0.05209 1.09574 1.46240 1.48158 1.49423 1.57527 1.67210 1.84380 2.32111 2.51876 3.10478 3.30088 3.36266 3.43781 3.51660 3.76977 3.84984 3.93568 3.94635 4.01426 4.23642 4.28539 4.31716 4.37610 4.46340 4.50093 4.54286 4.61059 4.69212 4.76616 4.85303 4.86701 4.91401 4.96339 4.99749 5.11105 5.14450 5.16666 5.24536 5.43599 5.49491 5.50750 5.59407 5.67878 5.78948 5.81131 6.17065 6.22408 6.44406 6.95841 7.09437 7.78952 8.47814 9.28777 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.004868 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.113818 B = 5750.161204 C = 7691.013292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.124 4.124 12 C -0.096 4.096 13 H 0.084 0.916 14 C -0.108 4.108 15 C 0.110 3.890 16 N -0.593 5.593 17 C 0.574 3.426 18 O -0.566 6.566 19 C -0.159 4.159 20 C -0.023 4.023 21 C -0.163 4.163 22 C 0.120 3.880 23 N -0.290 5.290 24 N -0.343 5.343 25 C 0.088 3.912 26 C -0.300 4.300 27 C 0.112 3.888 28 C 0.122 3.878 29 C 0.146 3.854 30 H 0.001 0.999 31 H 0.245 0.755 32 H -0.006 1.006 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.169 0.831 41 H 0.205 0.795 42 H 0.201 0.799 43 H 0.229 0.771 44 H 0.150 0.850 45 H 0.087 0.913 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -9.590 -4.206 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.191 1.191 7 C -0.360 4.360 8 H 0.103 0.897 9 N -0.334 5.334 10 C 0.055 3.945 11 C -0.162 4.162 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.146 4.146 15 C -0.012 4.012 16 N -0.324 5.324 17 C 0.362 3.638 18 O -0.446 6.446 19 C -0.164 4.164 20 C -0.046 4.046 21 C -0.184 4.184 22 C -0.004 4.004 23 N -0.057 5.057 24 N -0.166 5.166 25 C -0.089 4.089 26 C -0.329 4.329 27 C -0.008 4.008 28 C -0.001 4.001 29 C 0.038 3.962 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.012 0.988 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.187 0.813 41 H 0.221 0.779 42 H 0.218 0.782 43 H 0.245 0.755 44 H 0.167 0.833 45 H 0.105 0.895 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.093 -9.150 -3.730 15.617 hybrid contribution -0.700 0.622 0.401 1.018 sum 11.394 -8.528 -3.329 14.616 Atomic orbital electron populations 1.70162 1.06360 1.25130 1.58232 1.25581 0.96404 1.00783 1.02759 0.85200 0.77948 0.79658 0.77447 1.20862 1.23023 1.19103 1.19335 0.91200 0.83291 1.42187 0.89710 1.44396 1.02229 1.01071 1.85679 1.21377 0.83398 0.92359 0.97410 1.22600 0.97783 0.95476 1.00385 1.22196 0.94854 0.95128 0.99398 0.89730 1.21748 0.96307 0.95142 1.01417 1.21792 0.87644 0.92936 0.98780 1.48195 1.13801 1.08708 1.61719 1.17904 0.82154 0.87312 0.76392 1.90754 1.80676 1.17344 1.55825 1.20314 1.01870 1.00541 0.93662 1.22128 0.93757 0.89102 0.99594 1.21196 0.98436 1.02808 0.95962 1.22298 0.99825 0.89727 0.88575 1.46445 1.26011 1.20480 1.12806 1.77761 1.26535 1.20878 0.91390 1.24399 0.91914 0.92084 1.00542 1.21421 1.10442 1.06280 0.94768 1.20391 0.92595 0.92715 0.95050 1.21759 0.97507 0.79160 1.01685 1.21094 0.93516 0.86378 0.95167 0.98141 0.94545 0.98802 0.95184 0.91855 0.89707 0.92443 0.87352 0.89259 0.89282 0.81323 0.77857 0.78223 0.75501 0.83260 0.89476 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.29 10.45 21.65 0.23 -55.06 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 3 Si 0.97 43.42 29.56 68.60 2.03 45.45 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.23 -12.03 9.84 84.04 0.83 -11.20 16 8 H 0.09 4.16 7.49 -2.91 -0.02 4.13 16 9 N -0.61 -29.22 3.35 -669.30 -2.24 -31.46 16 10 C 0.18 8.50 5.48 86.85 0.48 8.97 16 11 C -0.12 -4.26 6.54 31.62 0.21 -4.05 16 12 C -0.10 -2.95 2.61 -10.08 -0.03 -2.98 16 13 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 14 C -0.11 -2.58 5.72 30.56 0.17 -2.41 16 15 C 0.11 2.65 6.35 86.66 0.55 3.20 16 16 N -0.59 -16.97 3.01 -822.88 -2.48 -19.45 16 17 C 0.57 18.13 7.12 86.61 0.62 18.75 16 18 O -0.57 -20.68 16.44 -4.13 -0.07 -20.75 16 19 C -0.16 -4.63 4.73 -18.61 -0.09 -4.71 16 20 C -0.02 -0.49 7.91 22.81 0.18 -0.31 16 21 C -0.16 -2.73 9.90 21.91 0.22 -2.52 16 22 C 0.12 2.44 11.12 83.28 0.93 3.36 16 23 N -0.29 -8.28 3.89 -183.71 -0.71 -8.99 16 24 N -0.34 -10.03 12.66 -57.40 -0.73 -10.76 16 25 C 0.09 2.30 11.95 84.92 1.01 3.31 16 26 C -0.30 -9.20 10.79 22.41 0.24 -8.96 16 27 C 0.11 3.53 6.88 40.43 0.28 3.81 16 28 C 0.12 3.84 4.77 85.73 0.41 4.25 16 29 C 0.15 5.57 2.76 45.60 0.13 5.69 16 30 H 0.00 0.05 7.93 -2.39 -0.02 0.03 16 31 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 32 H -0.01 -0.34 7.89 -2.39 -0.02 -0.36 16 33 H 0.03 1.58 7.06 -2.39 -0.02 1.57 16 34 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 1.53 7.98 -2.39 -0.02 1.51 16 37 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.24 6.92 -2.38 -0.02 2.22 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.17 2.84 7.75 -2.91 -0.02 2.82 16 41 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.23 3.81 8.06 -2.91 -0.02 3.79 16 44 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.09 2.57 8.14 -2.38 -0.02 2.56 16 46 H 0.08 2.56 5.26 -2.39 -0.01 2.55 16 Total: -1.00 -75.26 368.28 3.62 -71.65 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.99 Total: 18.08 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.60 Total: 11.30 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.93 Total: -125.72 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.26 3.62 -71.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042132348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.782 kcal (2) G-P(sol) polarization free energy of solvation -75.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds