Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99508 * 2 1 4 4 H 1.48504 * 109.46899 * 269.99653 * 3 2 1 5 5 H 1.48496 * 109.47566 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.46928 * 150.00078 * 3 2 1 7 7 C 1.38805 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.48161 * 126.40036 * 0.04092 * 9 7 2 11 11 C 1.55297 * 107.04625 * 184.96777 * 10 9 7 12 12 C 1.53703 * 101.81347 * 22.44043 * 11 10 9 13 13 H 1.09004 * 111.11117 * 78.60660 * 12 11 10 14 14 C 1.51980 * 114.99906 * 206.54630 * 12 11 10 15 15 C 1.53881 * 107.29490 * 175.43246 * 14 12 11 16 16 N 1.46641 * 110.79668 * 308.25953 * 15 14 12 17 17 C 1.34776 * 119.78198 * 227.68074 * 16 15 14 18 18 O 1.21596 * 120.00329 * 174.97602 * 17 16 15 19 19 C 1.47473 * 119.99682 * 354.97313 * 17 16 15 20 20 C 1.38999 * 120.29843 * 314.85828 * 19 17 16 21 21 C 1.38502 * 120.36752 * 180.02562 * 20 19 17 22 22 C 1.37820 * 120.79291 * 359.97438 * 21 20 19 23 23 C 1.39212 * 120.19934 * 0.02562 * 22 21 20 24 24 N 1.37218 * 133.65533 * 179.97438 * 23 22 21 25 25 H 0.96995 * 125.98331 * 359.97438 * 24 23 22 26 26 N 1.40033 * 108.03508 * 179.97438 * 24 23 22 27 27 C 1.30260 * 109.70445 * 0.02562 * 26 24 23 28 28 C 1.40685 * 119.78650 * 359.73992 * 23 22 21 29 29 C 1.47798 * 120.46463 * 47.53697 * 16 15 14 30 30 C 1.45507 * 126.39811 * 179.97438 * 9 7 2 31 31 H 1.09002 * 109.57073 * 265.88087 * 30 9 7 32 32 H 0.96993 * 120.00578 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.91328 * 304.31808 * 10 9 7 34 34 H 1.09002 * 109.91700 * 65.61691 * 10 9 7 35 35 H 1.08992 * 110.95810 * 140.57259 * 11 10 9 36 36 H 1.09002 * 110.95909 * 264.31258 * 11 10 9 37 37 H 1.08995 * 109.89402 * 294.88087 * 14 12 11 38 38 H 1.09002 * 109.89253 * 55.90986 * 14 12 11 39 39 H 1.08998 * 109.22935 * 68.50735 * 15 14 12 40 40 H 1.08995 * 109.23308 * 187.91507 * 15 14 12 41 41 H 1.08004 * 119.81461 * 0.02562 * 20 19 17 42 42 H 1.08002 * 119.60258 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.90555 * 179.97438 * 22 21 20 44 44 H 1.08001 * 125.64932 * 179.97438 * 27 26 24 45 45 H 1.09003 * 110.06444 * 189.67193 * 29 16 15 46 46 H 1.08998 * 110.06679 * 68.21184 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1467 -2.5532 -0.0008 11 6 -0.4342 -4.0739 0.1283 12 6 0.8678 -4.5875 0.7634 13 1 0.8903 -4.3821 1.8337 14 6 1.1975 -6.0411 0.4664 15 6 2.5769 -6.3325 1.0829 16 7 3.5615 -5.3354 0.6509 17 6 4.7658 -5.7364 0.1977 18 8 5.5505 -4.9208 -0.2468 19 6 5.1317 -7.1643 0.2409 20 6 4.8820 -7.9180 1.3818 21 6 5.2256 -9.2591 1.4242 22 6 5.8187 -9.8700 0.3405 23 6 6.0817 -9.1420 -0.8166 24 7 6.6462 -9.4579 -2.0267 25 1 6.9842 -10.3287 -2.2879 26 7 6.6490 -8.3029 -2.8185 27 6 6.1206 -7.3143 -2.1550 28 6 5.7350 -7.7800 -0.8792 29 6 3.2414 -3.8935 0.7059 30 6 1.9084 -3.7213 0.0005 31 1 1.9870 -4.0854 -1.0239 32 1 -0.4851 0.8399 0.0004 33 1 -0.5809 -2.0200 0.8448 34 1 -0.5619 -2.1747 -0.9349 35 1 -1.2858 -4.2553 0.7839 36 1 -0.5947 -4.5249 -0.8509 37 1 0.4461 -6.6909 0.9149 38 1 1.2303 -6.2012 -0.6113 39 1 2.4969 -6.3079 2.1697 40 1 2.9082 -7.3226 0.7699 41 1 4.4175 -7.4552 2.2401 42 1 5.0255 -9.8331 2.3169 43 1 6.0811 -10.9166 0.3893 44 1 5.9950 -6.3061 -2.5215 45 1 4.0128 -3.3194 0.1926 46 1 3.1610 -3.5676 1.7429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042178150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = 96.213502 kcal Electronic energy + Delta-G solvation = -29903.147276 eV Core-core repulsion = 25988.125724 eV Total energy + Delta-G solvation = -3915.021552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79764 -40.15477 -38.30079 -37.12068 -35.37265 -32.95415 -32.79680 -31.25946 -30.46386 -30.09081 -29.00757 -28.32731 -25.03659 -24.48571 -23.13210 -22.76923 -22.23874 -21.77691 -20.26595 -19.92733 -19.31768 -17.78481 -17.33774 -16.60477 -16.38248 -15.63911 -15.45301 -15.25845 -15.02904 -14.82596 -14.53607 -14.32167 -13.91643 -13.80014 -13.58598 -13.22255 -13.01394 -12.79822 -12.30734 -12.20007 -12.02142 -11.97017 -11.82215 -11.50877 -11.25780 -11.17517 -10.92225 -10.79061 -10.73853 -10.57724 -10.12438 -9.96769 -9.85384 -9.74461 -9.61440 -9.45952 -8.96780 -8.61122 -8.45363 -8.27966 -6.83935 -5.70100 -3.03862 0.33648 1.10982 2.28148 2.42862 2.73599 3.04280 3.43666 3.49329 3.50762 3.53716 4.20413 4.42632 4.52663 4.55933 4.65643 4.72217 4.91274 4.94495 5.01740 5.12601 5.33813 5.39223 5.41775 5.51860 5.56745 5.62952 5.69939 5.78915 5.89249 5.94845 6.03115 6.04071 6.08315 6.13837 6.14674 6.19287 6.38557 6.40975 6.49972 6.57526 6.71823 6.75968 6.97280 7.06809 7.30127 7.51831 7.57105 7.62693 7.82936 8.23121 8.26258 9.20863 9.83895 10.50464 11.42233 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003077 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.448286 B = 9096.831930 C = 9919.960552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.102 3.898 16 N -0.596 5.596 17 C 0.552 3.448 18 O -0.530 6.530 19 C -0.039 4.039 20 C -0.126 4.126 21 C -0.073 4.073 22 C -0.128 4.128 23 C 0.123 3.877 24 N -0.509 5.509 25 H 0.441 0.559 26 N -0.250 5.250 27 C 0.090 3.910 28 C -0.137 4.137 29 C 0.116 3.884 30 C 0.157 3.843 31 H 0.024 0.976 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.198 0.802 45 H 0.094 0.906 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 -23.403 3.520 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.021 4.021 16 N -0.329 5.329 17 C 0.339 3.661 18 O -0.407 6.407 19 C -0.045 4.045 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.150 4.150 23 C 0.006 3.994 24 N -0.225 5.225 25 H 0.286 0.714 26 N -0.064 5.064 27 C -0.106 4.106 28 C -0.146 4.146 29 C -0.006 4.006 30 C 0.048 3.952 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.214 0.786 45 H 0.112 0.888 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.523 -23.040 2.135 24.331 hybrid contribution 0.162 0.638 0.610 0.898 sum 7.685 -22.402 2.746 23.842 Atomic orbital electron populations 1.69940 1.04893 1.25056 1.57036 1.24776 0.95671 0.97639 1.02159 0.86149 0.78682 0.83519 0.77645 1.21589 1.21742 1.20556 1.19048 0.90457 0.82258 1.43836 0.90228 1.44170 1.01650 0.99183 1.86695 1.21543 0.83675 0.88487 1.00969 1.22729 0.96014 0.99657 0.99249 1.22295 0.97442 0.93433 1.00211 0.90414 1.21799 0.95268 0.97413 1.01297 1.21998 0.89255 0.91781 0.99090 1.48219 1.13465 1.08108 1.63136 1.18243 0.82224 0.87575 0.78047 1.90814 1.50321 1.54191 1.45337 1.19485 0.98114 0.93357 0.93529 1.21220 1.01672 0.94061 0.97707 1.20901 0.96374 0.94376 0.97694 1.20175 1.03846 0.99800 0.91160 1.18802 0.97336 0.94489 0.88788 1.46104 1.55207 1.11324 1.09821 0.71386 1.76809 1.19469 0.92095 1.18050 1.24061 0.96036 0.99185 0.91325 1.18663 1.07031 0.93108 0.95799 1.21774 0.99244 0.77980 1.01565 1.20987 0.90969 0.87615 0.95665 0.95855 0.93779 0.92617 0.94472 0.92247 0.92595 0.90819 0.91423 0.91531 0.89638 0.84538 0.84494 0.85289 0.78575 0.88792 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.44 55.49 0.58 -26.31 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.27 9.87 -15.06 -0.15 -6.42 16 8 H 0.08 2.15 7.41 -52.49 -0.39 1.76 16 9 N -0.59 -14.76 3.35 -162.88 -0.55 -15.31 16 10 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 11 C -0.14 -2.47 6.54 -25.15 -0.16 -2.63 16 12 C -0.11 -1.88 2.61 -89.50 -0.23 -2.11 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.49 5.72 -26.79 -0.15 -1.64 16 15 C 0.10 1.16 4.88 -3.51 -0.02 1.14 16 16 N -0.60 -8.96 3.02 -173.95 -0.52 -9.49 16 17 C 0.55 8.69 7.15 -12.50 -0.09 8.60 16 18 O -0.53 -10.25 16.00 5.28 0.08 -10.16 16 19 C -0.04 -0.49 4.90 -104.67 -0.51 -1.00 16 20 C -0.13 -1.18 7.48 -39.20 -0.29 -1.47 16 21 C -0.07 -0.52 9.99 -39.64 -0.40 -0.91 16 22 C -0.13 -0.97 10.06 -39.37 -0.40 -1.36 16 23 C 0.12 1.28 7.32 -84.17 -0.62 0.66 16 24 N -0.51 -5.00 7.45 32.35 0.24 -4.76 16 25 H 0.44 2.75 8.96 -182.65 -1.64 1.11 16 26 N -0.25 -3.15 12.58 30.81 0.39 -2.77 16 27 C 0.09 1.19 11.57 -17.10 -0.20 1.00 16 28 C -0.14 -1.76 5.97 -106.68 -0.64 -2.40 16 29 C 0.12 2.15 5.70 -3.94 -0.02 2.13 16 30 C 0.16 3.16 2.77 -67.80 -0.19 2.98 16 31 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 34 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 39 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 40 H 0.09 0.83 5.12 -51.93 -0.27 0.57 16 41 H 0.14 1.08 6.88 -52.48 -0.36 0.71 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 44 H 0.20 2.56 7.98 -52.49 -0.42 2.14 16 45 H 0.09 1.97 6.74 -51.93 -0.35 1.62 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -33.61 364.22 -11.02 -44.63 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.53 Total: 0.92 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -4.17 Total: 0.49 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.14 Total: -58.63 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.61 -11.02 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042178150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.844 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds