Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99508 * 2 1 4 4 H 1.48504 * 109.46899 * 269.99653 * 3 2 1 5 5 H 1.48496 * 109.47566 * 29.99845 * 3 2 1 6 6 H 1.48503 * 109.46928 * 150.00078 * 3 2 1 7 7 C 1.38805 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.48161 * 126.40036 * 0.04092 * 9 7 2 11 11 C 1.55297 * 107.04625 * 184.96777 * 10 9 7 12 12 C 1.53703 * 101.81347 * 22.44043 * 11 10 9 13 13 H 1.09004 * 111.11117 * 78.60660 * 12 11 10 14 14 C 1.51980 * 114.99906 * 206.54630 * 12 11 10 15 15 C 1.53881 * 107.29490 * 175.43246 * 14 12 11 16 16 N 1.46641 * 110.79668 * 308.25953 * 15 14 12 17 17 C 1.34776 * 119.78198 * 227.68074 * 16 15 14 18 18 O 1.21596 * 120.00329 * 174.97602 * 17 16 15 19 19 C 1.47473 * 119.99682 * 354.97313 * 17 16 15 20 20 C 1.38999 * 120.29843 * 314.85828 * 19 17 16 21 21 C 1.38502 * 120.36752 * 180.02562 * 20 19 17 22 22 C 1.37820 * 120.79291 * 359.97438 * 21 20 19 23 23 C 1.39212 * 120.19934 * 0.02562 * 22 21 20 24 24 N 1.37218 * 133.65533 * 179.97438 * 23 22 21 25 25 H 0.96995 * 125.98331 * 359.97438 * 24 23 22 26 26 N 1.40033 * 108.03508 * 179.97438 * 24 23 22 27 27 C 1.30260 * 109.70445 * 0.02562 * 26 24 23 28 28 C 1.40685 * 119.78650 * 359.73992 * 23 22 21 29 29 C 1.47798 * 120.46463 * 47.53697 * 16 15 14 30 30 C 1.45507 * 126.39811 * 179.97438 * 9 7 2 31 31 H 1.09002 * 109.57073 * 265.88087 * 30 9 7 32 32 H 0.96993 * 120.00578 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.91328 * 304.31808 * 10 9 7 34 34 H 1.09002 * 109.91700 * 65.61691 * 10 9 7 35 35 H 1.08992 * 110.95810 * 140.57259 * 11 10 9 36 36 H 1.09002 * 110.95909 * 264.31258 * 11 10 9 37 37 H 1.08995 * 109.89402 * 294.88087 * 14 12 11 38 38 H 1.09002 * 109.89253 * 55.90986 * 14 12 11 39 39 H 1.08998 * 109.22935 * 68.50735 * 15 14 12 40 40 H 1.08995 * 109.23308 * 187.91507 * 15 14 12 41 41 H 1.08004 * 119.81461 * 0.02562 * 20 19 17 42 42 H 1.08002 * 119.60258 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.90555 * 179.97438 * 22 21 20 44 44 H 1.08001 * 125.64932 * 179.97438 * 27 26 24 45 45 H 1.09003 * 110.06444 * 189.67193 * 29 16 15 46 46 H 1.08998 * 110.06679 * 68.21184 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1467 -2.5532 -0.0008 11 6 -0.4342 -4.0739 0.1283 12 6 0.8678 -4.5875 0.7634 13 1 0.8903 -4.3821 1.8337 14 6 1.1975 -6.0411 0.4664 15 6 2.5769 -6.3325 1.0829 16 7 3.5615 -5.3354 0.6509 17 6 4.7658 -5.7364 0.1977 18 8 5.5505 -4.9208 -0.2468 19 6 5.1317 -7.1643 0.2409 20 6 4.8820 -7.9180 1.3818 21 6 5.2256 -9.2591 1.4242 22 6 5.8187 -9.8700 0.3405 23 6 6.0817 -9.1420 -0.8166 24 7 6.6462 -9.4579 -2.0267 25 1 6.9842 -10.3287 -2.2879 26 7 6.6490 -8.3029 -2.8185 27 6 6.1206 -7.3143 -2.1550 28 6 5.7350 -7.7800 -0.8792 29 6 3.2414 -3.8935 0.7059 30 6 1.9084 -3.7213 0.0005 31 1 1.9870 -4.0854 -1.0239 32 1 -0.4851 0.8399 0.0004 33 1 -0.5809 -2.0200 0.8448 34 1 -0.5619 -2.1747 -0.9349 35 1 -1.2858 -4.2553 0.7839 36 1 -0.5947 -4.5249 -0.8509 37 1 0.4461 -6.6909 0.9149 38 1 1.2303 -6.2012 -0.6113 39 1 2.4969 -6.3079 2.1697 40 1 2.9082 -7.3226 0.7699 41 1 4.4175 -7.4552 2.2401 42 1 5.0255 -9.8331 2.3169 43 1 6.0811 -10.9166 0.3893 44 1 5.9950 -6.3061 -2.5215 45 1 4.0128 -3.3194 0.1926 46 1 3.1610 -3.5676 1.7429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042178150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 73.659744 kcal Electronic energy + Delta-G solvation = -29904.125280 eV Core-core repulsion = 25988.125724 eV Total energy + Delta-G solvation = -3915.999556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.63101 -41.39346 -39.71383 -37.94653 -36.82083 -34.66784 -33.69499 -32.85703 -31.57240 -30.90932 -30.39968 -29.77524 -26.56536 -26.02134 -24.20660 -23.72760 -23.34461 -22.69978 -21.79263 -21.41784 -20.55953 -18.92335 -18.44910 -18.10240 -17.46699 -16.83873 -16.69658 -16.40945 -16.11125 -15.91118 -15.77196 -15.64197 -15.53251 -14.90522 -14.84454 -14.47294 -14.35891 -13.99628 -13.82179 -13.53913 -13.17138 -13.08887 -12.91102 -12.79706 -12.71329 -12.67224 -12.42935 -12.08425 -12.05527 -11.97481 -11.76050 -11.52251 -11.45060 -11.30489 -11.00170 -10.87837 -10.72929 -9.76627 -9.66092 -9.04155 -8.90526 -7.86315 -5.21097 -0.45384 0.40368 1.34077 1.43666 1.45103 1.53871 1.63724 1.74879 1.91649 2.49274 2.73966 3.30725 3.32017 3.51406 3.61879 3.77670 3.85281 3.94082 3.97792 4.00491 4.07717 4.28375 4.32513 4.33385 4.35854 4.56226 4.58891 4.63853 4.69800 4.79652 4.85043 4.88027 4.93409 4.94586 5.13447 5.17044 5.24172 5.25883 5.32476 5.38959 5.40427 5.51670 5.62037 5.67174 5.76037 5.79175 6.19399 6.29553 6.37302 6.51415 7.06617 7.08425 7.76794 8.43753 9.24634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003077 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.448286 B = 9096.831930 C = 9919.960552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.082 0.918 14 C -0.111 4.111 15 C 0.097 3.903 16 N -0.594 5.594 17 C 0.549 3.451 18 O -0.583 6.583 19 C -0.070 4.070 20 C -0.109 4.109 21 C -0.061 4.061 22 C -0.109 4.109 23 C 0.117 3.883 24 N -0.495 5.495 25 H 0.457 0.543 26 N -0.268 5.268 27 C 0.063 3.937 28 C -0.164 4.164 29 C 0.129 3.871 30 C 0.148 3.852 31 H 0.002 0.998 32 H 0.247 0.753 33 H 0.025 0.975 34 H -0.004 1.004 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.156 0.844 42 H 0.184 0.816 43 H 0.169 0.831 44 H 0.180 0.820 45 H 0.056 0.944 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -28.225 6.192 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.024 4.024 16 N -0.326 5.326 17 C 0.338 3.662 18 O -0.464 6.464 19 C -0.076 4.076 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.131 4.131 23 C -0.001 4.001 24 N -0.213 5.213 25 H 0.305 0.695 26 N -0.084 5.084 27 C -0.132 4.132 28 C -0.173 4.173 29 C 0.006 3.994 30 C 0.040 3.960 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.015 0.985 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.174 0.826 42 H 0.201 0.799 43 H 0.187 0.813 44 H 0.197 0.803 45 H 0.074 0.926 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.556 -27.933 4.814 29.335 hybrid contribution 0.197 2.029 -0.236 2.053 sum 7.753 -25.903 4.578 27.424 Atomic orbital electron populations 1.70142 1.06049 1.25228 1.58293 1.25538 0.96558 1.00646 1.02714 0.85193 0.77809 0.79707 0.77370 1.21710 1.21554 1.19617 1.19314 0.90620 0.83795 1.42839 0.90717 1.44442 1.02578 1.00325 1.86468 1.21362 0.82882 0.92589 0.97552 1.22606 0.97892 0.94790 1.00790 1.22230 0.94392 0.95369 0.99523 0.89950 1.21809 0.97033 0.94734 1.01349 1.22357 0.87531 0.91672 1.00806 1.48253 1.14317 1.06968 1.63059 1.18887 0.81644 0.88963 0.76678 1.90775 1.51946 1.56034 1.47606 1.19241 1.01466 0.91440 0.95422 1.21566 0.99943 0.94902 0.96481 1.21416 0.94537 0.93338 0.98906 1.20741 1.01476 1.01394 0.89480 1.19123 0.97542 0.93727 0.89701 1.46077 1.54532 1.11192 1.09531 0.69516 1.76700 1.19737 0.92952 1.18990 1.23926 0.97641 0.98962 0.92634 1.18829 1.08217 0.94653 0.95604 1.21321 0.97017 0.80506 1.00564 1.21124 0.93336 0.86180 0.95400 0.98033 0.94360 0.95693 0.98526 0.89332 0.91587 0.86508 0.92370 0.88464 0.87020 0.82610 0.79884 0.81304 0.80345 0.92557 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 10.44 21.65 0.23 -57.74 16 2 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 3 Si 0.97 47.62 29.55 68.60 2.03 49.64 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.71 9.87 84.03 0.83 -12.88 16 8 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 9 N -0.61 -32.11 3.35 -669.23 -2.24 -34.35 16 10 C 0.18 8.95 5.45 86.85 0.47 9.42 16 11 C -0.12 -4.25 6.54 31.62 0.21 -4.04 16 12 C -0.10 -2.97 2.61 -10.07 -0.03 -3.00 16 13 H 0.08 2.54 8.13 -2.38 -0.02 2.53 16 14 C -0.11 -2.35 5.72 30.56 0.17 -2.18 16 15 C 0.10 1.85 4.88 86.65 0.42 2.28 16 16 N -0.59 -17.59 3.02 -822.51 -2.48 -20.07 16 17 C 0.55 17.67 7.15 86.68 0.62 18.29 16 18 O -0.58 -24.38 16.00 -4.02 -0.06 -24.44 16 19 C -0.07 -1.66 4.90 -19.90 -0.10 -1.76 16 20 C -0.11 -1.53 7.48 22.52 0.17 -1.36 16 21 C -0.06 -0.47 9.99 22.23 0.22 -0.25 16 22 C -0.11 -1.04 10.06 22.41 0.23 -0.81 16 23 C 0.12 2.10 7.32 39.13 0.29 2.38 16 24 N -0.50 -8.89 7.45 -51.56 -0.38 -9.27 16 25 H 0.46 4.58 8.96 -213.37 -1.91 2.67 16 26 N -0.27 -6.92 12.58 -56.45 -0.71 -7.63 16 27 C 0.06 1.79 11.57 85.65 0.99 2.78 16 28 C -0.16 -4.14 5.97 -21.20 -0.13 -4.27 16 29 C 0.13 4.99 5.70 85.74 0.49 5.48 16 30 C 0.15 6.15 2.77 45.61 0.13 6.28 16 31 H 0.00 0.10 7.90 -2.39 -0.02 0.08 16 32 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.02 1.36 7.21 -2.39 -0.02 1.35 16 34 H 0.00 -0.20 7.77 -2.39 -0.02 -0.22 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.39 7.97 -2.39 -0.02 1.37 16 39 H 0.10 1.35 7.98 -2.39 -0.02 1.33 16 40 H 0.11 1.63 5.12 -2.39 -0.01 1.62 16 41 H 0.16 1.58 6.88 -2.91 -0.02 1.56 16 42 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 44 H 0.18 5.42 7.98 -2.91 -0.02 5.40 16 45 H 0.06 2.57 6.74 -2.39 -0.02 2.55 16 46 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -82.77 364.22 0.93 -81.83 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.89 Total: 8.80 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.45 Total: 13.22 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.59 Total: -129.05 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -82.77 0.93 -81.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042178150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.492 kcal (2) G-P(sol) polarization free energy of solvation -82.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds