Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47309 * 119.99841 * 3 2 1 6 6 H 1.48493 * 109.47483 * 240.00257 * 3 2 1 7 7 C 1.38819 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99691 * 354.21782 * 7 2 1 9 9 N 1.36936 * 119.99953 * 174.21688 * 7 2 1 10 10 C 1.48151 * 126.39816 * 340.54704 * 9 7 2 11 11 C 1.55248 * 107.07234 * 184.86461 * 10 9 7 12 12 C 1.53693 * 101.71416 * 22.82303 * 11 10 9 13 13 H 1.09004 * 111.69642 * 78.61485 * 12 11 10 14 14 C 1.51980 * 115.00982 * 206.31042 * 12 11 10 15 15 C 1.53882 * 107.29202 * 175.45147 * 14 12 11 16 16 N 1.46595 * 110.71126 * 308.18925 * 15 14 12 17 17 C 1.34775 * 119.75450 * 227.72504 * 16 15 14 18 18 O 1.21586 * 120.00003 * 174.24877 * 17 16 15 19 19 C 1.47574 * 119.99682 * 354.24854 * 17 16 15 20 20 C 1.41755 * 120.01581 * 330.18887 * 19 17 16 21 21 C 1.35630 * 119.53977 * 179.75906 * 20 19 17 22 22 C 1.41169 * 119.50800 * 0.49932 * 21 20 19 23 23 N 1.32418 * 132.12054 * 179.78035 * 22 21 20 24 24 C 1.33585 * 109.22838 * 179.97438 * 23 22 21 25 25 C 1.35000 * 108.66019 * 359.97438 * 24 23 22 26 26 N 1.37003 * 107.14374 * 0.02562 * 25 24 23 27 27 C 1.35917 * 132.42321 * 180.02562 * 26 25 24 28 28 C 1.47798 * 120.49517 * 47.73880 * 16 15 14 29 29 C 1.45505 * 126.39734 * 160.85747 * 9 7 2 30 30 H 1.08994 * 109.57212 * 266.62752 * 29 9 7 31 31 H 0.97004 * 119.99692 * 183.34608 * 1 2 3 32 32 H 1.09002 * 109.92454 * 304.35611 * 10 9 7 33 33 H 1.09007 * 109.92165 * 65.65761 * 10 9 7 34 34 H 1.09001 * 111.19504 * 264.63910 * 11 10 9 35 35 H 1.08997 * 110.84418 * 140.84987 * 11 10 9 36 36 H 1.09005 * 109.89088 * 294.89730 * 14 12 11 37 37 H 1.08997 * 109.88963 * 55.92587 * 14 12 11 38 38 H 1.09000 * 109.23177 * 68.50331 * 15 14 12 39 39 H 1.09000 * 109.23107 * 187.90920 * 15 14 12 40 40 H 1.08003 * 120.22929 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.24587 * 180.24985 * 21 20 19 42 42 H 1.08004 * 125.67266 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.42701 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.75665 * 359.97277 * 27 26 25 45 45 H 1.08993 * 110.06777 * 189.52527 * 28 16 15 46 46 H 1.09001 * 110.06146 * 67.96446 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 1.4744 -2.1352 0.0933 9 7 3.3744 -1.2051 -0.1200 10 6 4.2130 -0.1038 -0.6480 11 6 5.6738 -0.6271 -0.6982 12 6 5.4589 -2.1481 -0.7486 13 1 5.1833 -2.4833 -1.7486 14 6 6.6043 -2.9777 -0.1921 15 6 6.1591 -4.4504 -0.2221 16 7 4.8561 -4.6115 0.4300 17 6 4.6786 -5.5927 1.3367 18 8 3.6352 -5.6664 1.9564 19 6 5.7509 -6.5777 1.5772 20 6 6.6420 -6.9256 0.5311 21 6 7.6270 -7.8284 0.7642 22 6 7.7434 -8.4159 2.0425 23 7 8.5881 -9.3082 2.5363 24 6 8.2817 -9.5435 3.8151 25 6 7.2166 -8.7850 4.1507 26 7 6.8657 -8.0667 3.0380 27 6 5.8819 -7.1580 2.8059 28 6 3.7354 -3.7061 0.1003 29 6 4.2705 -2.2929 0.2420 30 1 4.6265 -2.1486 1.2620 31 1 -0.4850 -0.8387 0.0490 32 1 3.8799 0.1695 -1.6492 33 1 4.1529 0.7594 0.0149 34 1 6.2260 -0.3407 0.1969 35 1 6.1812 -0.2751 -1.5963 36 1 7.4922 -2.8459 -0.8105 37 1 6.8180 -2.6744 0.8327 38 1 6.0857 -4.7823 -1.2577 39 1 6.8981 -5.0595 0.2984 40 1 6.5399 -6.4718 -0.4436 41 1 8.3147 -8.0987 -0.0234 42 1 8.8005 -10.2263 4.4716 43 1 6.7320 -8.7508 5.1153 44 1 5.1988 -6.8930 3.5994 45 1 2.9099 -3.8648 0.7941 46 1 3.4035 -3.8794 -0.9234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042308049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 120.432487 kcal Electronic energy + Delta-G solvation = -29731.190993 eV Core-core repulsion = 25817.219655 eV Total energy + Delta-G solvation = -3913.971338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.19173 -40.67073 -38.79983 -37.23365 -35.87900 -34.08514 -33.10136 -31.62104 -31.25696 -29.63710 -29.27953 -28.83175 -25.36349 -24.58376 -23.65523 -23.29267 -22.33624 -22.09863 -20.76949 -20.11782 -19.43361 -18.45599 -17.58478 -17.22994 -16.47701 -16.33449 -16.10699 -15.41182 -15.20343 -15.07075 -14.95710 -14.77020 -14.34408 -13.97140 -13.87185 -13.53845 -13.29928 -13.17083 -12.99218 -12.78511 -12.51045 -12.19351 -12.01954 -11.84671 -11.66757 -11.37329 -11.17533 -11.00138 -10.66037 -10.59040 -10.51317 -10.08894 -10.03731 -9.90809 -9.23915 -9.21681 -9.03227 -8.77325 -8.63889 -8.24770 -7.08620 -6.29769 -3.31311 0.22304 0.69736 2.06096 2.26940 2.77085 2.89545 3.24476 3.38704 3.46735 3.68247 3.82778 4.06073 4.20607 4.32091 4.49186 4.58318 4.61153 4.70392 4.85180 4.94242 4.99647 5.07224 5.08710 5.23539 5.27861 5.39675 5.43244 5.50150 5.52556 5.63711 5.68661 5.72543 5.75678 5.80965 5.88225 5.99347 6.07124 6.16828 6.21315 6.22217 6.37595 6.42991 6.49353 6.59440 6.72405 6.82480 7.30015 7.46385 7.69104 8.01771 8.30919 9.00331 9.54093 10.21512 11.18078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.002736 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.295636 B =10233.174026 C =10888.555073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.078 2.922 4 H -0.302 1.302 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.323 4.323 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.108 3.892 11 C -0.121 4.121 12 C -0.114 4.114 13 H 0.082 0.918 14 C -0.121 4.121 15 C 0.091 3.909 16 N -0.596 5.596 17 C 0.566 3.434 18 O -0.531 6.531 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.086 4.086 22 C 0.230 3.770 23 N -0.493 5.493 24 C 0.033 3.967 25 C -0.094 4.094 26 N -0.367 5.367 27 C 0.128 3.872 28 C 0.119 3.881 29 C 0.156 3.844 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.183 0.817 43 H 0.186 0.814 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.619 -14.534 1.955 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.220 4.220 3 Si 0.913 3.087 4 H -0.231 1.231 5 H -0.227 1.227 6 H -0.212 1.212 7 C -0.450 4.450 8 H 0.095 0.905 9 N -0.328 5.328 10 C -0.016 4.016 11 C -0.159 4.159 12 C -0.134 4.134 13 H 0.100 0.900 14 C -0.159 4.159 15 C -0.032 4.032 16 N -0.329 5.329 17 C 0.352 3.648 18 O -0.408 6.408 19 C -0.158 4.158 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.013 4.013 23 N -0.213 5.213 24 C -0.117 4.117 25 C -0.224 4.224 26 N -0.039 5.039 27 C 0.003 3.997 28 C -0.003 4.003 29 C 0.047 3.953 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.200 0.800 43 H 0.203 0.797 44 H 0.193 0.807 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.363 -13.311 1.893 23.573 hybrid contribution -0.465 -1.324 0.669 1.554 sum 18.897 -14.635 2.562 24.039 Atomic orbital electron populations 1.70913 1.05626 1.29378 1.51137 1.25953 0.96609 1.01222 0.98241 0.83738 0.73031 0.75673 0.76289 1.23053 1.22654 1.21169 1.20135 0.79145 0.95285 1.50449 0.90459 1.44450 1.02525 1.12295 1.73497 1.22442 0.89647 0.91983 0.97574 1.22418 0.97108 0.95006 1.01366 1.22326 0.96049 0.95038 1.00005 0.89981 1.21830 0.98309 0.93704 1.02064 1.22413 0.84640 0.98247 0.97852 1.48089 1.12906 1.30942 1.40933 1.17750 0.86339 0.80857 0.79829 1.90843 1.28033 1.74048 1.47898 1.19411 1.00328 1.02166 0.93930 1.21534 0.93261 0.96350 0.99969 1.20187 1.00445 0.96797 0.93141 1.21184 0.90450 0.98329 0.91375 1.70750 1.24874 1.15779 1.09862 1.22564 0.95965 1.00462 0.92753 1.22817 1.04567 1.02571 0.92438 1.42824 1.21559 1.27574 1.11975 1.21652 0.90263 0.88960 0.98853 1.21737 0.88178 0.88707 1.01688 1.20968 0.90144 0.88518 0.95658 0.95322 0.92830 0.93163 0.95137 0.91532 0.91323 0.90385 0.91170 0.91035 0.88694 0.82342 0.82490 0.79967 0.79703 0.80663 0.88465 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.71 55.49 0.76 -28.39 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 3 Si 1.08 26.66 24.60 -169.99 -4.18 22.47 16 4 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 5 H -0.30 -7.16 6.86 56.52 0.39 -6.77 16 6 H -0.28 -6.32 5.33 56.52 0.30 -6.02 16 7 C -0.32 -9.01 10.23 -15.06 -0.15 -9.16 16 8 H 0.08 2.29 7.65 -52.49 -0.40 1.88 16 9 N -0.60 -14.10 3.22 -162.94 -0.53 -14.63 16 10 C 0.11 2.23 4.64 -1.94 -0.01 2.22 16 11 C -0.12 -1.84 6.54 -25.18 -0.16 -2.01 16 12 C -0.11 -1.65 2.61 -89.51 -0.23 -1.88 16 13 H 0.08 1.19 8.13 -51.93 -0.42 0.76 16 14 C -0.12 -1.27 5.72 -26.79 -0.15 -1.43 16 15 C 0.09 0.89 4.58 -3.53 -0.02 0.87 16 16 N -0.60 -8.23 3.01 -173.96 -0.52 -8.75 16 17 C 0.57 8.18 7.41 -12.45 -0.09 8.09 16 18 O -0.53 -9.79 16.01 5.29 0.08 -9.71 16 19 C -0.15 -1.69 5.34 -105.37 -0.56 -2.25 16 20 C -0.09 -0.75 7.37 -39.17 -0.29 -1.04 16 21 C -0.09 -0.75 10.09 -39.40 -0.40 -1.15 16 22 C 0.23 2.57 7.81 -155.92 -1.22 1.35 16 23 N -0.49 -5.84 11.31 -12.72 -0.14 -5.98 16 24 C 0.03 0.30 11.82 -17.94 -0.21 0.09 16 25 C -0.09 -0.81 11.75 -16.39 -0.19 -1.01 16 26 N -0.37 -3.84 2.93 -62.31 -0.18 -4.03 16 27 C 0.13 1.35 10.48 -16.37 -0.17 1.18 16 28 C 0.12 2.11 5.61 -3.95 -0.02 2.08 16 29 C 0.16 2.95 2.76 -67.82 -0.19 2.76 16 30 H 0.03 0.59 7.93 -51.93 -0.41 0.18 16 31 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 32 H 0.05 1.08 6.79 -51.93 -0.35 0.72 16 33 H 0.03 0.68 4.01 -51.92 -0.21 0.47 16 34 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 38 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 39 H 0.10 0.75 4.37 -51.93 -0.23 0.53 16 40 H 0.16 1.03 5.30 -52.48 -0.28 0.75 16 41 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.18 1.69 7.84 -52.48 -0.41 1.28 16 45 H 0.10 2.04 6.87 -51.93 -0.36 1.68 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -35.66 354.36 -9.65 -45.31 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.11 Total: 0.32 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -4.17 Total: -1.97 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.62 Total: -61.77 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.18 Total: 22.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.66 -9.65 -45.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042308049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.742 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds