Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47072 * 269.99892 * 3 2 1 5 5 H 1.48499 * 109.47233 * 29.99633 * 3 2 1 6 6 H 1.48499 * 109.47213 * 149.99754 * 3 2 1 7 7 C 1.38813 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99645 * 0.02562 * 7 2 1 10 10 C 1.46779 * 125.33170 * 180.02562 * 9 7 2 11 11 C 1.53969 * 106.62342 * 161.48566 * 10 9 7 12 12 H 1.08998 * 113.01244 * 265.71308 * 11 10 9 13 13 C 1.54105 * 109.46201 * 138.17439 * 11 10 9 14 14 N 1.46747 * 106.62659 * 278.65175 * 13 11 10 15 15 C 1.34781 * 125.32686 * 161.55779 * 14 13 11 16 16 O 1.21284 * 119.99618 * 179.69260 * 15 14 13 17 17 C 1.50693 * 120.00050 * 359.70194 * 15 14 13 18 18 N 1.46503 * 109.46947 * 179.97438 * 17 15 14 19 19 N 1.39871 * 125.46093 * 270.02193 * 18 17 15 20 20 C 1.30250 * 110.08386 * 179.97438 * 19 18 17 21 21 C 1.45932 * 107.78299 * 359.76156 * 20 19 18 22 22 C 1.39943 * 134.02288 * 179.49260 * 21 20 19 23 23 C 1.36469 * 119.63200 * 180.46146 * 22 21 20 24 24 C 1.38964 * 120.63063 * 0.22939 * 23 22 21 25 25 C 1.36589 * 120.81617 * 0.05304 * 24 23 22 26 26 C 1.37040 * 125.45822 * 90.00210 * 18 17 15 27 27 C 1.46634 * 109.34284 * 341.29845 * 14 13 11 28 28 C 1.53694 * 108.01026 * 1.07990 * 27 14 13 29 29 H 1.09001 * 112.55774 * 254.09200 * 28 27 14 30 30 C 1.46664 * 125.33956 * 359.97438 * 9 7 2 31 31 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.03121 * 42.19040 * 10 9 7 33 33 H 1.09001 * 110.02826 * 280.76960 * 10 9 7 34 34 H 1.09003 * 110.15400 * 159.31417 * 13 11 10 35 35 H 1.09000 * 109.95743 * 37.88326 * 13 11 10 36 36 H 1.09001 * 109.47255 * 59.99491 * 17 15 14 37 37 H 1.09002 * 109.47055 * 299.99385 * 17 15 14 38 38 H 1.07993 * 126.10301 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.18724 * 0.74435 * 22 21 20 40 40 H 1.08002 * 119.68444 * 180.25911 * 23 22 21 41 41 H 1.08002 * 119.59394 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.07817 * 179.97438 * 25 24 23 43 43 H 1.09007 * 109.76523 * 120.71747 * 27 14 13 44 44 H 1.09000 * 109.76416 * 241.43632 * 27 14 13 45 45 H 1.08997 * 109.77127 * 60.93044 * 30 9 7 46 46 H 1.08996 * 109.77154 * 300.16440 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.9381 -3.7219 0.0016 11 6 0.8502 -4.7058 0.4697 12 1 0.8856 -4.9019 1.5413 13 6 0.9085 -5.9830 -0.3906 14 7 0.1882 -5.6850 -1.6340 15 6 0.2959 -6.3812 -2.7830 16 8 -0.3513 -6.0518 -3.7545 17 6 1.2201 -7.5689 -2.8607 18 7 1.1574 -8.1494 -4.2043 19 7 0.2735 -9.1530 -4.6143 20 6 0.4768 -9.4435 -5.8676 21 6 1.5568 -8.5906 -6.3533 22 6 2.2086 -8.4526 -7.5839 23 6 3.2161 -7.5416 -7.7155 24 6 3.6034 -6.7538 -6.6383 25 6 2.9863 -6.8742 -5.4257 26 6 1.9550 -7.7959 -5.2611 27 6 -0.6715 -4.5151 -1.4287 28 6 -0.4702 -4.0246 0.0139 29 1 -1.3142 -4.2672 0.6596 30 6 -0.1347 -2.5245 0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7829 -3.7443 0.6900 33 1 2.2685 -3.9818 -1.0041 34 1 0.4259 -6.8096 0.1310 35 1 1.9455 -6.2357 -0.6117 36 1 0.9143 -8.3157 -2.1279 37 1 2.2407 -7.2495 -2.6498 38 1 -0.0604 -10.1811 -6.4451 39 1 1.9128 -9.0606 -8.4262 40 1 3.7168 -7.4315 -8.6661 41 1 4.4025 -6.0378 -6.7612 42 1 3.2972 -6.2561 -4.5964 43 1 -0.3940 -3.7264 -2.1282 44 1 -1.7145 -4.7927 -1.5814 45 1 -0.5482 -2.0625 -0.8960 46 1 -0.5498 -2.0456 0.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049119621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = 99.186758 kcal Electronic energy + Delta-G solvation = -29318.286136 eV Core-core repulsion = 25403.393514 eV Total energy + Delta-G solvation = -3914.892622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44192 -40.23517 -38.31227 -37.23437 -35.06849 -33.67367 -32.31518 -30.89381 -30.20253 -29.93354 -29.71454 -27.52679 -25.58514 -25.26654 -23.19388 -23.06088 -22.09985 -21.11399 -20.26036 -19.47921 -19.31283 -17.50651 -17.36947 -17.04687 -16.67500 -16.02038 -15.49919 -15.31358 -14.94713 -14.79378 -14.43911 -14.21579 -14.04513 -13.73316 -13.60221 -13.34687 -13.12996 -12.90370 -12.37550 -12.17304 -12.04599 -11.95912 -11.86362 -11.77667 -11.51227 -11.20856 -10.95608 -10.92047 -10.84868 -10.49399 -10.40642 -10.16522 -10.07798 -9.97651 -9.74258 -9.72131 -8.79410 -8.66587 -8.48646 -8.02618 -6.89180 -5.77172 -3.11067 0.82967 1.37821 2.06245 2.40418 2.57492 3.10721 3.37260 3.42167 3.44111 3.68960 4.24983 4.36787 4.38600 4.43821 4.60615 4.66820 4.81823 4.83248 4.95255 5.00205 5.12493 5.16119 5.22434 5.38525 5.45310 5.48946 5.51057 5.61234 5.65332 5.70705 5.83916 5.86052 6.04300 6.19576 6.21410 6.25995 6.33943 6.38964 6.40912 6.53326 6.61366 6.66234 6.74741 6.86035 7.46926 7.48882 7.50751 7.57936 7.75446 8.15013 8.20936 9.16866 9.77285 10.40529 11.34428 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.002805 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.584231 B = 9980.709792 C =11148.423067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.101 0.899 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.506 3.494 16 O -0.525 6.525 17 C 0.129 3.871 18 N -0.389 5.389 19 N -0.243 5.243 20 C 0.072 3.928 21 C -0.181 4.181 22 C -0.042 4.042 23 C -0.162 4.162 24 C -0.070 4.070 25 C -0.137 4.137 26 C 0.140 3.860 27 C 0.120 3.880 28 C -0.122 4.122 29 H 0.089 0.911 30 C 0.187 3.813 31 H 0.253 0.747 32 H 0.036 0.964 33 H 0.016 0.984 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.197 0.803 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -20.030 -7.775 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.119 0.881 13 C -0.018 4.018 14 N -0.340 5.340 15 C 0.292 3.708 16 O -0.401 6.401 17 C 0.003 3.997 18 N -0.177 5.177 19 N -0.054 5.054 20 C -0.126 4.126 21 C -0.189 4.189 22 C -0.062 4.062 23 C -0.182 4.182 24 C -0.091 4.091 25 C -0.159 4.159 26 C 0.025 3.975 27 C -0.002 4.002 28 C -0.142 4.142 29 H 0.108 0.892 30 C 0.062 3.938 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.213 0.787 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.461 -19.854 -7.144 21.382 hybrid contribution 0.798 1.237 -0.518 1.561 sum 4.259 -18.617 -7.662 20.577 Atomic orbital electron populations 1.69947 1.04884 1.25182 1.56860 1.24808 0.95745 0.97754 1.01999 0.86105 0.78564 0.83386 0.77614 1.21566 1.21625 1.20670 1.19029 0.90437 0.82299 1.44152 0.90409 1.44212 1.01433 0.99947 1.87231 1.21240 0.93846 0.85938 0.97136 1.22967 0.97258 0.93457 0.99187 0.88103 1.22074 0.96431 0.98269 0.85022 1.48261 1.44346 1.30589 1.10839 1.20464 0.83935 0.84232 0.82198 1.90762 1.45684 1.68451 1.35192 1.21350 1.01355 0.95050 0.81951 1.47628 1.29090 1.32307 1.08640 1.76575 1.10693 1.03545 1.14554 1.25051 0.96352 0.99374 0.91781 1.19896 1.01800 1.02107 0.95057 1.20318 0.94098 0.97001 0.94797 1.20659 0.99711 0.98561 0.99240 1.20732 0.98519 0.97919 0.91890 1.19881 0.97141 0.99542 0.99287 1.18780 0.93902 0.96805 0.87977 1.21999 0.93500 0.86937 0.97737 1.23151 0.97047 1.00145 0.93854 0.89240 1.21042 0.84615 0.86516 1.01649 0.93641 0.94607 0.96677 0.91444 0.90917 0.86018 0.86320 0.78673 0.85528 0.85692 0.85314 0.85854 0.90583 0.92147 0.93263 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.25 55.49 0.57 -26.01 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.74 3.38 -171.84 -0.58 -15.32 16 10 C 0.14 2.76 6.49 -3.38 -0.02 2.74 16 11 C -0.11 -1.63 4.16 -88.26 -0.37 -2.00 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.11 1.25 5.77 -3.33 -0.02 1.23 16 14 N -0.61 -9.19 3.30 -172.27 -0.57 -9.76 16 15 C 0.51 8.09 7.91 -10.99 -0.09 8.00 16 16 O -0.53 -10.86 16.74 5.55 0.09 -10.77 16 17 C 0.13 1.54 5.88 -5.20 -0.03 1.51 16 18 N -0.39 -5.50 3.14 -59.88 -0.19 -5.68 16 19 N -0.24 -3.42 12.40 31.87 0.40 -3.02 16 20 C 0.07 0.83 12.28 -15.14 -0.19 0.65 16 21 C -0.18 -2.23 6.37 -105.20 -0.67 -2.90 16 22 C -0.04 -0.41 10.07 -39.58 -0.40 -0.81 16 23 C -0.16 -1.53 9.97 -39.95 -0.40 -1.93 16 24 C -0.07 -0.73 9.96 -39.91 -0.40 -1.12 16 25 C -0.14 -1.69 9.97 -39.79 -0.40 -2.08 16 26 C 0.14 1.93 6.87 -84.17 -0.58 1.35 16 27 C 0.12 2.10 6.22 -3.61 -0.02 2.08 16 28 C -0.12 -2.10 4.01 -88.60 -0.36 -2.46 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 C 0.19 4.31 4.77 -3.57 -0.02 4.30 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.30 7.72 -51.93 -0.40 -0.10 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.71 7.43 -51.93 -0.39 0.33 16 36 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.12 1.10 7.87 -51.93 -0.41 0.70 16 38 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.08 1.59 7.30 -51.92 -0.38 1.21 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 46 H 0.05 1.27 7.38 -51.93 -0.38 0.88 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -35.70 376.21 -10.33 -46.04 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.50 Total: 0.18 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.20 Total: 1.84 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.37 Total: -59.80 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.70 -10.33 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049119621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.225 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds