Wall clock time and date at job start Sat Apr 11 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47072 * 269.99892 * 3 2 1 5 5 H 1.48499 * 109.47233 * 29.99633 * 3 2 1 6 6 H 1.48499 * 109.47213 * 149.99754 * 3 2 1 7 7 C 1.38813 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99645 * 0.02562 * 7 2 1 10 10 C 1.46779 * 125.33170 * 180.02562 * 9 7 2 11 11 C 1.53969 * 106.62342 * 161.48566 * 10 9 7 12 12 H 1.08998 * 113.01244 * 265.71308 * 11 10 9 13 13 C 1.54105 * 109.46201 * 138.17439 * 11 10 9 14 14 N 1.46747 * 106.62659 * 278.65175 * 13 11 10 15 15 C 1.34781 * 125.32686 * 161.55779 * 14 13 11 16 16 O 1.21284 * 119.99618 * 179.69260 * 15 14 13 17 17 C 1.50693 * 120.00050 * 359.70194 * 15 14 13 18 18 N 1.46503 * 109.46947 * 179.97438 * 17 15 14 19 19 N 1.39871 * 125.46093 * 270.02193 * 18 17 15 20 20 C 1.30250 * 110.08386 * 179.97438 * 19 18 17 21 21 C 1.45932 * 107.78299 * 359.76156 * 20 19 18 22 22 C 1.39943 * 134.02288 * 179.49260 * 21 20 19 23 23 C 1.36469 * 119.63200 * 180.46146 * 22 21 20 24 24 C 1.38964 * 120.63063 * 0.22939 * 23 22 21 25 25 C 1.36589 * 120.81617 * 0.05304 * 24 23 22 26 26 C 1.37040 * 125.45822 * 90.00210 * 18 17 15 27 27 C 1.46634 * 109.34284 * 341.29845 * 14 13 11 28 28 C 1.53694 * 108.01026 * 1.07990 * 27 14 13 29 29 H 1.09001 * 112.55774 * 254.09200 * 28 27 14 30 30 C 1.46664 * 125.33956 * 359.97438 * 9 7 2 31 31 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.03121 * 42.19040 * 10 9 7 33 33 H 1.09001 * 110.02826 * 280.76960 * 10 9 7 34 34 H 1.09003 * 110.15400 * 159.31417 * 13 11 10 35 35 H 1.09000 * 109.95743 * 37.88326 * 13 11 10 36 36 H 1.09001 * 109.47255 * 59.99491 * 17 15 14 37 37 H 1.09002 * 109.47055 * 299.99385 * 17 15 14 38 38 H 1.07993 * 126.10301 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.18724 * 0.74435 * 22 21 20 40 40 H 1.08002 * 119.68444 * 180.25911 * 23 22 21 41 41 H 1.08002 * 119.59394 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.07817 * 179.97438 * 25 24 23 43 43 H 1.09007 * 109.76523 * 120.71747 * 27 14 13 44 44 H 1.09000 * 109.76416 * 241.43632 * 27 14 13 45 45 H 1.08997 * 109.77127 * 60.93044 * 30 9 7 46 46 H 1.08996 * 109.77154 * 300.16440 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.9381 -3.7219 0.0016 11 6 0.8502 -4.7058 0.4697 12 1 0.8856 -4.9019 1.5413 13 6 0.9085 -5.9830 -0.3906 14 7 0.1882 -5.6850 -1.6340 15 6 0.2959 -6.3812 -2.7830 16 8 -0.3513 -6.0518 -3.7545 17 6 1.2201 -7.5689 -2.8607 18 7 1.1574 -8.1494 -4.2043 19 7 0.2735 -9.1530 -4.6143 20 6 0.4768 -9.4435 -5.8676 21 6 1.5568 -8.5906 -6.3533 22 6 2.2086 -8.4526 -7.5839 23 6 3.2161 -7.5416 -7.7155 24 6 3.6034 -6.7538 -6.6383 25 6 2.9863 -6.8742 -5.4257 26 6 1.9550 -7.7959 -5.2611 27 6 -0.6715 -4.5151 -1.4287 28 6 -0.4702 -4.0246 0.0139 29 1 -1.3142 -4.2672 0.6596 30 6 -0.1347 -2.5245 0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7829 -3.7443 0.6900 33 1 2.2685 -3.9818 -1.0041 34 1 0.4259 -6.8096 0.1310 35 1 1.9455 -6.2357 -0.6117 36 1 0.9143 -8.3157 -2.1279 37 1 2.2407 -7.2495 -2.6498 38 1 -0.0604 -10.1811 -6.4451 39 1 1.9128 -9.0606 -8.4262 40 1 3.7168 -7.4315 -8.6661 41 1 4.4025 -6.0378 -6.7612 42 1 3.2972 -6.2561 -4.5964 43 1 -0.3940 -3.7264 -2.1282 44 1 -1.7145 -4.7927 -1.5814 45 1 -0.5482 -2.0625 -0.8960 46 1 -0.5498 -2.0456 0.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049119621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:09 Heat of formation + Delta-G solvation = 76.109229 kcal Electronic energy + Delta-G solvation = -29319.286853 eV Core-core repulsion = 25403.393514 eV Total energy + Delta-G solvation = -3915.893339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.32940 -41.51090 -39.68650 -38.06809 -36.68810 -34.64279 -34.07121 -32.13011 -31.35891 -31.26483 -30.77157 -28.65397 -27.21734 -26.78502 -24.53012 -24.00353 -22.93700 -22.14429 -21.90026 -20.89753 -20.43711 -19.00007 -18.41722 -18.18123 -17.86035 -17.27116 -16.76220 -16.61778 -16.21908 -16.06120 -15.55529 -15.46801 -15.15500 -14.96199 -14.74361 -14.54714 -14.36101 -14.14940 -13.65955 -13.55926 -13.39342 -13.33345 -13.13478 -12.83361 -12.78137 -12.75141 -12.72096 -12.03663 -11.98924 -11.89521 -11.78892 -11.71739 -11.63757 -11.48766 -11.46085 -10.88170 -10.72050 -9.75470 -9.64949 -8.90889 -8.88358 -7.87856 -5.23053 0.00533 0.54307 1.19171 1.38770 1.43565 1.45414 1.53961 1.55207 1.97968 2.47277 2.87479 3.26141 3.31321 3.40838 3.45517 3.59003 3.62682 3.81281 3.83780 3.91788 4.00953 4.10947 4.17041 4.21446 4.26608 4.36806 4.48702 4.51944 4.55275 4.71528 4.74149 4.79279 4.89378 4.93482 4.99894 5.04954 5.08020 5.17640 5.35673 5.43626 5.45509 5.56012 5.57657 5.60883 5.74826 5.85118 6.04539 6.18807 6.39327 6.61119 6.94543 7.08923 7.77905 8.38997 9.22224 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.002805 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.584231 B = 9980.709792 C =11148.423067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.137 3.863 11 C -0.093 4.093 12 H 0.132 0.868 13 C 0.107 3.893 14 N -0.605 5.605 15 C 0.502 3.498 16 O -0.584 6.584 17 C 0.134 3.866 18 N -0.405 5.405 19 N -0.279 5.279 20 C 0.080 3.920 21 C -0.203 4.203 22 C -0.040 4.040 23 C -0.165 4.165 24 C -0.071 4.071 25 C -0.164 4.164 26 C 0.111 3.889 27 C 0.128 3.872 28 C -0.109 4.109 29 H 0.118 0.882 30 C 0.197 3.803 31 H 0.246 0.754 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.234 0.766 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.001 0.999 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -22.878 -7.768 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.113 4.113 12 H 0.150 0.850 13 C -0.014 4.014 14 N -0.338 5.338 15 C 0.290 3.710 16 O -0.464 6.464 17 C 0.009 3.991 18 N -0.192 5.192 19 N -0.090 5.090 20 C -0.118 4.118 21 C -0.211 4.211 22 C -0.060 4.060 23 C -0.185 4.185 24 C -0.091 4.091 25 C -0.186 4.186 26 C -0.003 4.003 27 C 0.005 3.995 28 C -0.129 4.129 29 H 0.136 0.864 30 C 0.071 3.929 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.250 0.750 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.019 0.981 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.367 -22.750 -7.103 24.430 hybrid contribution 0.273 2.143 -0.644 2.254 sum 5.640 -20.607 -7.748 22.726 Atomic orbital electron populations 1.70187 1.06302 1.25211 1.58342 1.25656 0.96606 1.01109 1.02656 0.85098 0.77880 0.79228 0.77267 1.21820 1.22056 1.18909 1.19447 0.91037 0.83740 1.42844 0.89851 1.44543 1.02234 1.01408 1.86923 1.21492 0.95582 0.84481 0.97227 1.23003 0.93280 0.93514 1.01461 0.84966 1.22359 0.98488 0.97556 0.83028 1.48345 1.43955 1.29410 1.12099 1.21319 0.83590 0.84833 0.81227 1.90727 1.48170 1.70241 1.37227 1.21537 1.01487 0.93733 0.82351 1.47790 1.29444 1.32717 1.09278 1.76503 1.11829 1.04662 1.15974 1.25747 0.95630 0.99121 0.91275 1.20320 1.02535 1.02439 0.95784 1.20757 0.93419 0.97003 0.94821 1.21078 0.99497 0.97775 1.00118 1.21115 0.98477 0.98035 0.91503 1.20075 0.97972 1.00193 1.00336 1.19196 0.94587 0.97705 0.88784 1.21657 0.94146 0.86925 0.96764 1.22971 0.99662 0.95946 0.94314 0.86372 1.20715 0.84080 0.90285 0.97771 0.94489 0.93326 0.97238 0.87019 0.87857 0.82996 0.83660 0.74988 0.82296 0.82674 0.83276 0.86025 0.95428 0.91963 0.98059 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 10.25 21.65 0.22 -57.54 16 2 C -0.07 -3.85 5.48 84.86 0.47 -3.39 16 3 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -31.32 3.38 -697.58 -2.36 -33.68 16 10 C 0.14 5.07 6.49 86.65 0.56 5.63 16 11 C -0.09 -2.51 4.16 -9.26 -0.04 -2.55 16 12 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 13 C 0.11 2.10 5.77 86.71 0.50 2.60 16 14 N -0.60 -17.56 3.30 -817.32 -2.70 -20.26 16 15 C 0.50 15.83 7.91 87.65 0.69 16.52 16 16 O -0.58 -25.01 16.74 -3.04 -0.05 -25.07 16 17 C 0.13 2.96 5.88 85.63 0.50 3.47 16 18 N -0.40 -11.14 3.14 -343.36 -1.08 -12.21 16 19 N -0.28 -7.63 12.40 -53.09 -0.66 -8.29 16 20 C 0.08 1.73 12.28 86.92 1.07 2.80 16 21 C -0.20 -4.78 6.37 -20.24 -0.13 -4.90 16 22 C -0.04 -0.69 10.07 22.27 0.22 -0.47 16 23 C -0.17 -2.72 9.97 22.03 0.22 -2.51 16 24 C -0.07 -1.38 9.96 22.06 0.22 -1.16 16 25 C -0.16 -4.01 9.97 22.14 0.22 -3.79 16 26 C 0.11 3.02 6.87 39.21 0.27 3.29 16 27 C 0.13 4.60 6.22 86.59 0.54 5.14 16 28 C -0.11 -3.71 4.01 -9.48 -0.04 -3.75 16 29 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 30 C 0.20 9.55 4.77 86.59 0.41 9.96 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.01 0.38 7.72 -2.39 -0.02 0.36 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.49 7.43 -2.39 -0.02 1.48 16 36 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.15 2.34 7.87 -2.39 -0.02 2.32 16 38 H 0.23 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.03 1.24 7.30 -2.38 -0.02 1.23 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.00 0.07 6.73 -2.39 -0.02 0.05 16 46 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 Total: -1.00 -85.76 376.21 2.95 -82.82 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.99 Total: 11.83 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.55 Total: 14.31 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -6.57 Total: -131.98 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -85.76 2.95 -82.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049119621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.928 kcal (2) G-P(sol) polarization free energy of solvation -85.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds