Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48492 * 109.47290 * 274.98390 * 3 2 1 5 5 H 1.48504 * 109.47245 * 34.98790 * 3 2 1 6 6 H 1.48505 * 109.46944 * 154.98469 * 3 2 1 7 7 C 1.38813 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00265 * 186.98518 * 7 2 1 9 9 N 1.36940 * 119.99950 * 6.97876 * 7 2 1 10 10 C 1.46777 * 125.33889 * 174.11879 * 9 7 2 11 11 C 1.53963 * 106.62628 * 161.48791 * 10 9 7 12 12 H 1.08998 * 113.01245 * 265.71691 * 11 10 9 13 13 C 1.54115 * 109.45766 * 138.17654 * 11 10 9 14 14 N 1.46737 * 106.62631 * 278.65665 * 13 11 10 15 15 C 1.34778 * 125.32707 * 161.56766 * 14 13 11 16 16 O 1.21282 * 120.00074 * 179.69155 * 15 14 13 17 17 C 1.50701 * 120.00052 * 359.68847 * 15 14 13 18 18 N 1.46500 * 109.47637 * 180.02562 * 17 15 14 19 19 C 1.33985 * 125.02644 * 124.99909 * 18 17 15 20 20 C 1.38246 * 107.90851 * 179.97438 * 19 18 17 21 21 C 1.41128 * 134.81617 * 180.02562 * 20 19 18 22 22 C 1.35653 * 119.53465 * 179.97438 * 21 20 19 23 23 C 1.39689 * 121.72686 * 0.02562 * 22 21 20 24 24 C 1.35634 * 121.81305 * 359.97438 * 23 22 21 25 25 C 1.41153 * 119.60052 * 0.02562 * 24 23 22 26 26 N 1.32062 * 134.67962 * 180.32278 * 25 24 23 27 27 C 1.46638 * 109.34640 * 341.29587 * 14 13 11 28 28 C 1.53692 * 108.00591 * 1.08604 * 27 14 13 29 29 H 1.09009 * 112.55490 * 254.08430 * 28 27 14 30 30 C 1.46668 * 125.33898 * 354.12651 * 9 7 2 31 31 H 0.96998 * 119.99439 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.02584 * 42.19815 * 10 9 7 33 33 H 1.09003 * 110.03064 * 280.78039 * 10 9 7 34 34 H 1.09008 * 110.15185 * 159.31340 * 13 11 10 35 35 H 1.09001 * 109.95345 * 37.89225 * 13 11 10 36 36 H 1.09007 * 109.46861 * 300.00414 * 17 15 14 37 37 H 1.09000 * 109.47394 * 59.99982 * 17 15 14 38 38 H 1.08000 * 126.04030 * 359.97438 * 19 18 17 39 39 H 1.07991 * 120.23273 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.13733 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.09486 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.19735 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.76008 * 120.72272 * 27 14 13 44 44 H 1.08995 * 109.76219 * 241.44131 * 27 14 13 45 45 H 1.08997 * 109.77067 * 60.92139 * 30 9 7 46 46 H 1.08991 * 109.77248 * 300.16465 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4118 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1143 9 7 1.3330 -2.3838 -0.1430 10 6 1.9537 -3.7066 -0.2812 11 6 0.8649 -4.7415 0.0563 12 1 0.8849 -5.0561 1.0998 13 6 0.9447 -5.9143 -0.9404 14 7 0.2422 -5.4822 -2.1541 15 6 0.3720 -6.0451 -3.3718 16 8 -0.2619 -5.6119 -4.3107 17 6 1.3048 -7.2125 -3.5668 18 7 1.2676 -7.6387 -4.9679 19 6 2.3373 -7.7473 -5.7673 20 6 1.8999 -8.1750 -7.0071 21 6 2.5276 -8.4684 -8.2366 22 6 1.7770 -8.8788 -9.2894 23 6 0.3907 -9.0204 -9.1924 24 6 -0.2763 -8.7556 -8.0414 25 6 0.4398 -8.3239 -6.9041 26 7 0.1098 -7.9972 -5.6678 27 6 -0.6281 -4.3464 -1.8333 28 6 -0.4524 -4.0196 -0.3419 29 1 -1.3049 -4.3366 0.2589 30 6 -0.1262 -2.5258 -0.1830 31 1 -0.4849 0.8401 0.0004 32 1 2.7878 -3.8021 0.4141 33 1 2.3015 -3.8509 -1.3041 34 1 0.4592 -6.7962 -0.5223 35 1 1.9866 -6.1359 -1.1714 36 1 2.3200 -6.9141 -3.3050 37 1 0.9924 -8.0380 -2.9272 38 1 3.3604 -7.5378 -5.4918 39 1 3.5979 -8.3676 -8.3383 40 1 2.2639 -9.1012 -10.2274 41 1 -0.1654 -9.3498 -10.0576 42 1 -1.3488 -8.8744 -7.9954 43 1 -0.3446 -3.4834 -2.4357 44 1 -1.6667 -4.6101 -2.0330 45 1 -0.5278 -1.9687 -1.0294 46 1 -0.5587 -2.1505 0.7444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049176848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = 109.008476 kcal Electronic energy + Delta-G solvation = -28831.966534 eV Core-core repulsion = 24917.499814 eV Total energy + Delta-G solvation = -3914.466720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46330 -40.28558 -38.41585 -37.22609 -35.10129 -33.09232 -32.31357 -31.86487 -30.40780 -29.78372 -28.90357 -28.06683 -25.62189 -25.51023 -23.59187 -22.62052 -22.06277 -20.70255 -20.29199 -19.51540 -19.49754 -17.61584 -17.27771 -17.08484 -16.71396 -16.13299 -15.84551 -15.50437 -14.94958 -14.80350 -14.37761 -14.14719 -14.04188 -13.75632 -13.43414 -13.27156 -13.21185 -12.94224 -12.59060 -12.19710 -12.01848 -11.91359 -11.80481 -11.73236 -11.58958 -11.52182 -10.98414 -10.86961 -10.49111 -10.40630 -10.32027 -10.17845 -10.10996 -10.01843 -9.87734 -9.74875 -8.73846 -8.66208 -8.51964 -7.71208 -6.91011 -5.80577 -3.13472 0.50843 1.74571 1.98456 2.35210 2.51641 2.97831 3.36026 3.41279 3.43352 3.78608 3.99192 4.24003 4.38803 4.41823 4.59915 4.65047 4.68192 4.85394 4.90978 4.97840 5.10907 5.20587 5.30462 5.34352 5.41794 5.44734 5.46365 5.57566 5.58467 5.68505 5.82935 5.98405 6.01096 6.16750 6.23112 6.35973 6.36767 6.41792 6.48784 6.50137 6.58336 6.61670 6.71594 6.81426 7.42099 7.49522 7.53467 7.55996 7.73384 8.09534 8.18821 9.14384 9.75021 10.38508 11.31492 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002310 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.504857 B =12116.720610 C =12681.277936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.101 0.899 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.513 3.487 16 O -0.510 6.510 17 C 0.109 3.891 18 N -0.308 5.308 19 C 0.076 3.924 20 C -0.207 4.207 21 C -0.042 4.042 22 C -0.160 4.160 23 C -0.084 4.084 24 C -0.097 4.097 25 C 0.094 3.906 26 N -0.273 5.273 27 C 0.121 3.879 28 C -0.122 4.122 29 H 0.090 0.910 30 C 0.186 3.814 31 H 0.254 0.746 32 H 0.035 0.965 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -20.795 -8.809 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.119 0.881 13 C -0.018 4.018 14 N -0.341 5.341 15 C 0.298 3.702 16 O -0.385 6.385 17 C -0.016 4.016 18 N -0.082 5.082 19 C -0.079 4.079 20 C -0.217 4.217 21 C -0.062 4.062 22 C -0.180 4.180 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.061 4.061 26 N -0.099 5.099 27 C -0.001 4.001 28 C -0.142 4.142 29 H 0.108 0.892 30 C 0.061 3.939 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.202 0.798 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.149 -20.157 -8.339 22.040 hybrid contribution 1.165 0.934 -0.352 1.534 sum 4.314 -19.223 -8.691 21.533 Atomic orbital electron populations 1.69956 1.04936 1.25258 1.56455 1.24830 0.95728 0.97778 1.01848 0.86112 0.78664 0.83491 0.77569 1.21561 1.21691 1.20605 1.19026 0.91122 0.82440 1.43519 0.90380 1.44212 1.01404 1.01136 1.86087 1.21236 0.93748 0.85762 0.97407 1.22969 0.97279 0.94225 0.98410 0.88088 1.22081 0.96622 0.97747 0.85380 1.48209 1.44578 1.33623 1.07711 1.19829 0.83879 0.84251 0.82200 1.90822 1.45727 1.62417 1.39486 1.21722 1.02835 0.98221 0.78843 1.48047 1.05052 1.45234 1.09834 1.22625 0.93594 1.01155 0.90538 1.19550 0.93950 1.13293 0.94909 1.20202 0.98963 0.96503 0.90534 1.20481 0.93994 1.04674 0.98823 1.20609 0.94512 0.98547 0.97019 1.19888 0.99268 1.02536 0.90153 1.21015 0.93072 0.99002 0.92965 1.77876 1.03193 1.23653 1.05169 1.22005 0.93346 0.88217 0.96491 1.23146 0.97111 1.00406 0.93509 0.89191 1.21058 0.84708 0.86707 1.01469 0.93596 0.94657 0.96645 0.91421 0.90920 0.85176 0.86062 0.79751 0.86075 0.86268 0.85869 0.85637 0.90507 0.91998 0.92966 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.30 55.49 0.57 -25.84 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.79 29.56 -169.99 -5.02 16.76 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.29 10.24 -15.06 -0.15 -6.45 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.60 -14.57 3.38 -171.85 -0.58 -15.15 16 10 C 0.14 2.70 6.49 -3.39 -0.02 2.68 16 11 C -0.11 -1.57 4.16 -88.26 -0.37 -1.94 16 12 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 13 C 0.11 1.16 5.77 -3.33 -0.02 1.14 16 14 N -0.61 -8.76 3.30 -172.27 -0.57 -9.33 16 15 C 0.51 7.77 7.86 -10.98 -0.09 7.69 16 16 O -0.51 -10.32 15.98 5.56 0.09 -10.23 16 17 C 0.11 1.11 5.96 -5.19 -0.03 1.08 16 18 N -0.31 -3.99 3.35 -62.00 -0.21 -4.20 16 19 C 0.08 0.81 11.45 -16.61 -0.19 0.62 16 20 C -0.21 -2.57 6.33 -105.19 -0.67 -3.23 16 21 C -0.04 -0.42 10.09 -39.41 -0.40 -0.81 16 22 C -0.16 -1.49 9.90 -39.96 -0.40 -1.88 16 23 C -0.08 -0.83 9.89 -39.97 -0.40 -1.22 16 24 C -0.10 -1.19 10.08 -39.41 -0.40 -1.59 16 25 C 0.09 1.38 7.49 -83.05 -0.62 0.76 16 26 N -0.27 -4.43 11.56 33.25 0.38 -4.04 16 27 C 0.12 2.06 6.21 -3.61 -0.02 2.04 16 28 C -0.12 -2.05 4.01 -88.61 -0.36 -2.40 16 29 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 30 C 0.19 4.23 4.78 -3.58 -0.02 4.21 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.30 7.72 -51.93 -0.40 -0.10 16 34 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.63 7.43 -51.93 -0.39 0.24 16 36 H 0.13 0.83 7.78 -51.93 -0.40 0.43 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.08 1.58 7.29 -51.93 -0.38 1.20 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.36 6.61 -51.93 -0.34 1.01 16 46 H 0.05 1.18 7.52 -51.93 -0.39 0.78 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -36.63 374.59 -10.43 -47.06 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.50 Total: -1.13 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.24 Total: 0.45 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.40 Total: -58.56 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.63 -10.43 -47.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049176848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.071 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds