Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48504 * 109.47024 * 240.00096 * 3 2 1 5 5 H 1.48492 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47403 * 120.00106 * 3 2 1 7 7 C 1.38822 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00067 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.47120 * 125.76699 * 359.95144 * 9 7 2 11 11 C 1.54569 * 107.25125 * 177.44779 * 10 9 7 12 12 C 1.54428 * 102.44673 * 338.32313 * 11 10 9 13 13 H 1.09000 * 109.99945 * 279.75071 * 12 11 10 14 14 C 1.48212 * 125.76708 * 180.02562 * 9 7 2 15 15 H 1.09004 * 112.30035 * 326.50993 * 14 9 7 16 16 C 1.53010 * 107.11274 * 89.10358 * 14 9 7 17 17 C 1.52736 * 110.76275 * 168.09588 * 16 14 9 18 18 C 1.52997 * 109.22312 * 297.34898 * 17 16 14 19 19 N 1.45119 * 112.30197 * 156.92268 * 12 11 10 20 20 C 1.34771 * 119.58062 * 110.92315 * 19 12 11 21 21 O 1.21639 * 119.99677 * 355.88630 * 20 19 12 22 22 C 1.47258 * 120.00417 * 175.88907 * 20 19 12 23 23 C 1.38934 * 120.90351 * 54.39408 * 22 20 19 24 24 C 1.39774 * 119.18600 * 179.77525 * 23 22 20 25 25 C 1.35068 * 121.27525 * 0.49492 * 24 23 22 26 26 N 1.36234 * 121.76924 * 359.75928 * 25 24 23 27 27 N 1.40080 * 132.48192 * 179.97438 * 26 25 24 28 28 C 1.31357 * 108.88200 * 180.02562 * 27 26 25 29 29 C 1.38885 * 108.94446 * 359.97438 * 28 27 26 30 30 C 1.37181 * 120.19057 * 0.02562 * 26 25 24 31 31 H 0.96999 * 119.99852 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.89008 * 58.03684 * 10 9 7 33 33 H 1.09003 * 110.01733 * 296.93008 * 10 9 7 34 34 H 1.08996 * 110.81341 * 220.08680 * 11 10 9 35 35 H 1.08996 * 110.81290 * 96.55906 * 11 10 9 36 36 H 1.09005 * 109.21444 * 288.41233 * 16 14 9 37 37 H 1.08996 * 109.21381 * 47.77617 * 16 14 9 38 38 H 1.08991 * 109.64618 * 55.89619 * 17 16 14 39 39 H 1.09005 * 109.63773 * 176.52546 * 17 16 14 40 40 H 1.08999 * 108.51393 * 297.42516 * 18 17 16 41 41 H 1.09000 * 110.62034 * 176.88178 * 18 17 16 42 42 H 1.07994 * 120.40852 * 359.97438 * 23 22 20 43 43 H 1.07994 * 119.36314 * 180.23216 * 24 23 22 44 44 H 1.08004 * 119.11522 * 179.78271 * 25 24 23 45 45 H 1.08002 * 125.53216 * 180.02562 * 28 27 26 46 46 H 1.07995 * 126.21785 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0104 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1381 -2.5359 0.0033 11 6 -0.4461 -4.0492 -0.0617 12 6 0.8576 -4.6292 -0.6522 13 1 0.8695 -4.4941 -1.7337 14 6 1.9339 -3.7397 0.0028 15 1 2.8707 -3.7721 -0.5537 16 6 2.1396 -4.1395 1.4653 17 6 2.4860 -5.6228 1.5775 18 6 1.3144 -6.4549 1.0523 19 7 1.0336 -6.0322 -0.3259 20 6 0.9380 -6.9588 -1.2999 21 8 0.6320 -6.6251 -2.4288 22 6 1.2040 -8.3752 -0.9974 23 6 0.5261 -9.0258 0.0260 24 6 0.8034 -10.3722 0.2791 25 6 1.7227 -11.0469 -0.4447 26 7 2.4175 -10.4525 -1.4546 27 7 3.4012 -10.9257 -2.3326 28 6 3.7604 -9.9494 -3.1346 29 6 3.0312 -8.8116 -2.8146 30 6 2.1949 -9.1344 -1.7626 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5626 -2.0335 -0.8659 33 1 -0.5549 -2.1116 0.9168 34 1 -1.2908 -4.2445 -0.7223 35 1 -0.6317 -4.4498 0.9348 36 1 2.9521 -3.5485 1.8880 37 1 1.2244 -3.9417 2.0234 38 1 3.3622 -5.8417 0.9674 39 1 2.6888 -5.8739 2.6187 40 1 0.4452 -6.2648 1.6819 41 1 1.5591 -7.5169 1.0708 42 1 -0.2085 -8.4987 0.6166 43 1 0.2753 -10.8818 1.0715 44 1 1.9119 -12.0856 -0.2170 45 1 4.5018 -10.0203 -3.9168 46 1 3.1048 -7.8493 -3.2992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = 117.630535 kcal Electronic energy + Delta-G solvation = -30136.201940 eV Core-core repulsion = 26222.109100 eV Total energy + Delta-G solvation = -3914.092840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16086 -40.37575 -38.10230 -37.25492 -35.32649 -33.20685 -32.44977 -32.06941 -30.93911 -29.27056 -28.75889 -28.09175 -25.61034 -24.33057 -23.99135 -22.95353 -22.14558 -21.85362 -20.44480 -19.97352 -18.30117 -17.73638 -17.56170 -16.91419 -16.54088 -16.16427 -15.72246 -15.64790 -14.79895 -14.77081 -14.36925 -14.20007 -14.13964 -13.78094 -13.50820 -13.40300 -13.00690 -12.60851 -12.50118 -12.33950 -12.22379 -11.96866 -11.93712 -11.40473 -11.08704 -11.07129 -10.97137 -10.80096 -10.72565 -10.64996 -10.43022 -10.12475 -10.11906 -9.71565 -9.66148 -9.62384 -9.59182 -8.63497 -8.36278 -7.84735 -6.87962 -5.72138 -3.06445 0.20088 0.83584 1.91394 2.50481 2.54677 2.91693 3.21341 3.40577 3.45142 3.46071 3.95184 4.13070 4.36297 4.38457 4.47817 4.61876 4.91121 5.01221 5.07589 5.19712 5.24754 5.33614 5.35119 5.44212 5.47187 5.55010 5.61325 5.64801 5.68475 5.80089 5.83461 5.96292 5.96769 6.07445 6.17355 6.28127 6.32540 6.36235 6.47870 6.54096 6.57476 6.69811 6.92638 7.02714 7.28391 7.47787 7.53885 7.59717 7.80999 8.18079 8.23649 9.19341 9.78926 10.44526 11.39014 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002892 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.267364 B = 9680.254492 C =10016.258397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.130 3.870 13 H 0.102 0.898 14 C 0.157 3.843 15 H 0.060 0.940 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.097 3.903 19 N -0.580 5.580 20 C 0.563 3.437 21 O -0.525 6.525 22 C -0.109 4.109 23 C -0.051 4.051 24 C -0.172 4.172 25 C 0.128 3.872 26 N -0.282 5.282 27 N -0.318 5.318 28 C 0.082 3.918 29 C -0.264 4.264 30 C 0.126 3.874 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -22.468 3.309 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.120 0.880 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.026 4.026 19 N -0.311 5.311 20 C 0.350 3.650 21 O -0.401 6.401 22 C -0.114 4.114 23 C -0.074 4.074 24 C -0.194 4.194 25 C 0.003 3.997 26 N -0.050 5.050 27 N -0.141 5.141 28 C -0.096 4.096 29 C -0.293 4.293 30 C 0.007 3.993 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.167 0.833 43 H 0.177 0.823 44 H 0.186 0.814 45 H 0.212 0.788 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.254 -23.264 2.910 23.553 hybrid contribution 0.282 1.699 -0.050 1.723 sum 2.536 -21.565 2.860 21.901 Atomic orbital electron populations 1.69941 1.04865 1.25205 1.56828 1.24794 0.95700 0.97608 1.02145 0.86202 0.78456 0.83216 0.77890 1.21145 1.21628 1.21213 1.18988 0.90399 0.82186 1.44041 0.90472 1.44680 1.01457 0.99227 1.86783 1.21172 0.84266 0.87634 1.01318 1.23121 0.96348 0.99821 0.99742 1.21835 0.96826 0.77369 1.01375 0.87982 1.21329 0.94493 0.86138 0.93201 0.92212 1.22110 1.02024 0.92939 0.99849 1.21834 0.97660 0.97083 1.00628 1.21995 0.99066 0.99226 0.82268 1.47524 1.68875 1.06780 1.07939 1.17747 0.78011 0.84262 0.85022 1.90841 1.47150 1.80993 1.21149 1.20448 0.98784 0.94818 0.97396 1.21707 0.97331 0.94405 0.93945 1.20626 1.00760 0.94995 1.03042 1.21475 0.91898 0.99585 0.86749 1.46192 1.27105 1.08331 1.23361 1.77853 1.07317 1.22054 1.06834 1.23911 0.98107 0.90278 0.97268 1.21381 1.03512 1.01849 1.02532 1.20116 0.97431 0.84600 0.97119 0.93664 0.92984 0.93990 0.91905 0.92251 0.91998 0.91773 0.92047 0.91107 0.91161 0.89640 0.83307 0.82267 0.81430 0.78781 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.33 55.49 0.57 -26.07 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.18 10.29 -15.05 -0.15 -6.34 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.65 2.91 -162.18 -0.47 -15.12 16 10 C 0.18 4.29 5.19 -2.88 -0.01 4.27 16 11 C -0.15 -2.82 6.11 -25.16 -0.15 -2.97 16 12 C 0.13 2.38 3.03 -67.28 -0.20 2.18 16 13 H 0.10 2.13 6.99 -51.93 -0.36 1.77 16 14 C 0.16 3.12 3.59 -66.34 -0.24 2.88 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 16 C -0.13 -2.17 5.14 -26.86 -0.14 -2.31 16 17 C -0.13 -1.68 6.06 -26.87 -0.16 -1.84 16 18 C 0.10 1.12 5.24 -3.84 -0.02 1.10 16 19 N -0.58 -8.66 2.77 -166.55 -0.46 -9.12 16 20 C 0.56 8.83 7.13 -12.60 -0.09 8.74 16 21 O -0.52 -10.22 16.45 5.24 0.09 -10.14 16 22 C -0.11 -1.38 4.99 -102.68 -0.51 -1.89 16 23 C -0.05 -0.44 7.53 -38.75 -0.29 -0.74 16 24 C -0.17 -1.10 9.90 -40.13 -0.40 -1.50 16 25 C 0.13 1.02 11.12 -16.72 -0.19 0.84 16 26 N -0.28 -3.34 3.89 -9.41 -0.04 -3.38 16 27 N -0.32 -3.96 12.66 30.51 0.39 -3.57 16 28 C 0.08 0.92 11.95 -17.52 -0.21 0.71 16 29 C -0.26 -3.48 10.79 -39.35 -0.42 -3.90 16 30 C 0.13 1.69 6.88 -82.19 -0.57 1.12 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 33 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.00 6.92 -51.93 -0.36 0.64 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.74 7.61 -51.93 -0.40 0.35 16 41 H 0.09 0.80 4.72 -51.93 -0.25 0.56 16 42 H 0.15 1.01 7.40 -52.49 -0.39 0.63 16 43 H 0.16 0.42 8.06 -52.49 -0.42 -0.01 16 44 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -33.97 365.07 -9.55 -43.52 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.25 Total: 1.42 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.86 Total: 0.08 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.01 Total: -57.26 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.97 -9.55 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.154 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds