Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48494 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47499 * 300.00491 * 3 2 1 6 6 H 1.48499 * 109.46889 * 60.00405 * 3 2 1 7 7 C 1.38809 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99892 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.47125 * 125.76081 * 0.02562 * 9 7 2 11 11 C 1.54567 * 107.25003 * 182.59273 * 10 9 7 12 12 C 1.54425 * 102.44924 * 21.66668 * 11 10 9 13 13 H 1.08994 * 110.00472 * 80.26267 * 12 11 10 14 14 C 1.48208 * 125.76908 * 180.02562 * 9 7 2 15 15 H 1.08997 * 111.53046 * 32.97812 * 14 9 7 16 16 C 1.53019 * 107.11337 * 270.86380 * 14 9 7 17 17 C 1.52730 * 110.80349 * 191.93578 * 16 14 9 18 18 C 1.53465 * 108.61855 * 63.66322 * 17 16 14 19 19 N 1.45123 * 111.59815 * 203.42605 * 12 11 10 20 20 C 1.34782 * 119.57411 * 248.67033 * 19 12 11 21 21 O 1.21630 * 120.00165 * 354.20430 * 20 19 12 22 22 C 1.47256 * 119.99828 * 174.19808 * 20 19 12 23 23 C 1.38938 * 120.90929 * 306.08533 * 22 20 19 24 24 C 1.39769 * 119.18969 * 179.97438 * 23 22 20 25 25 C 1.35066 * 121.27646 * 0.02562 * 24 23 22 26 26 N 1.36225 * 121.77045 * 0.02562 * 25 24 23 27 27 N 1.40083 * 132.48734 * 179.97438 * 26 25 24 28 28 C 1.31363 * 108.87913 * 179.25156 * 27 26 25 29 29 C 1.38880 * 108.94677 * 0.65196 * 28 27 26 30 30 C 1.37190 * 120.18982 * 359.68971 * 26 25 24 31 31 H 0.97003 * 120.00322 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.88585 * 302.00080 * 10 9 7 33 33 H 1.08998 * 109.88404 * 63.02694 * 10 9 7 34 34 H 1.08996 * 110.81200 * 139.90352 * 11 10 9 35 35 H 1.08999 * 110.81542 * 263.42688 * 11 10 9 36 36 H 1.08999 * 109.20562 * 71.59887 * 16 14 9 37 37 H 1.08993 * 109.20937 * 312.27898 * 16 14 9 38 38 H 1.09005 * 109.64144 * 183.45315 * 17 16 14 39 39 H 1.08997 * 109.64393 * 303.87055 * 17 16 14 40 40 H 1.09007 * 109.83394 * 61.54271 * 18 17 16 41 41 H 1.09002 * 109.83519 * 182.49670 * 18 17 16 42 42 H 1.07998 * 120.40224 * 359.95589 * 23 22 20 43 43 H 1.08001 * 119.35503 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.11261 * 179.97438 * 25 24 23 45 45 H 1.07999 * 125.52899 * 180.02562 * 28 27 26 46 46 H 1.08002 * 126.22036 * 179.46425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1382 -2.5358 -0.0005 11 6 -0.4462 -4.0491 0.0662 12 6 0.8583 -4.6285 0.6556 13 1 0.8714 -4.4928 1.7370 14 6 1.9339 -3.7395 -0.0005 15 1 2.8737 -3.7552 0.5514 16 6 2.1389 -4.1411 -1.4628 17 6 2.4846 -5.6245 -1.5746 18 6 1.2913 -6.4454 -1.0674 19 7 1.0224 -6.0295 0.3145 20 6 0.9296 -6.9647 1.2807 21 8 0.8152 -6.6281 2.4439 22 6 0.9667 -8.3939 0.9281 23 6 0.0919 -8.9193 -0.0148 24 6 0.1589 -10.2810 -0.3227 25 6 1.0556 -11.0926 0.2786 26 7 1.9336 -10.6261 1.2099 27 7 2.9374 -11.2514 1.9607 28 6 3.5233 -10.3528 2.7189 29 6 2.9201 -9.1202 2.5054 30 6 1.9298 -9.2992 1.5581 31 1 -0.4851 0.8400 0.0004 32 1 -0.5617 -2.0327 0.8687 33 1 -0.5538 -2.1105 -0.9140 34 1 -1.2900 -4.2437 0.7281 35 1 -0.6330 -4.4506 -0.9297 36 1 2.9513 -3.5506 -1.8863 37 1 1.2237 -3.9430 -2.0207 38 1 2.6864 -5.8763 -2.6159 39 1 3.3636 -5.8426 -0.9681 40 1 0.4163 -6.2475 -1.6867 41 1 1.5337 -7.5077 -1.0971 42 1 -0.6312 -8.2832 -0.5037 43 1 -0.5196 -10.6921 -1.0555 44 1 1.0765 -12.1395 0.0146 45 1 4.3351 -10.5436 3.4052 46 1 3.1783 -8.1907 2.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = 115.773235 kcal Electronic energy + Delta-G solvation = -30117.702981 eV Core-core repulsion = 26203.529603 eV Total energy + Delta-G solvation = -3914.173378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15708 -40.36666 -38.10280 -37.23808 -35.30925 -33.19283 -32.44471 -32.07589 -30.93530 -29.26255 -28.72895 -28.11107 -25.57463 -24.32582 -24.00467 -22.93967 -22.14760 -21.85410 -20.44366 -19.97851 -18.32320 -17.69107 -17.55017 -16.90643 -16.59346 -16.13653 -15.72118 -15.64513 -14.85145 -14.78278 -14.36840 -14.16474 -14.05006 -13.79517 -13.49130 -13.40009 -13.03431 -12.60970 -12.51441 -12.33907 -12.18384 -11.99423 -11.95282 -11.41443 -11.08874 -11.06391 -11.00157 -10.81880 -10.72412 -10.66738 -10.43170 -10.12789 -10.06193 -9.71732 -9.66073 -9.62580 -9.61319 -8.64409 -8.35969 -7.85224 -6.87900 -5.72701 -3.06782 0.20195 0.83967 1.91585 2.50130 2.54483 2.93335 3.21388 3.39462 3.45366 3.47495 3.95233 4.13518 4.37693 4.39178 4.47518 4.61592 4.90863 5.01496 5.11262 5.20478 5.23836 5.33860 5.35348 5.43391 5.46251 5.55161 5.60401 5.65657 5.68666 5.80444 5.83034 5.96198 5.96792 6.07861 6.17132 6.29079 6.32114 6.35772 6.46024 6.54173 6.57441 6.70400 6.92822 7.02936 7.28077 7.48041 7.53960 7.59230 7.80893 8.18277 8.23500 9.19075 9.78682 10.44147 11.38606 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002846 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.375632 B = 9837.238653 C =10136.762544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.152 4.152 12 C 0.131 3.869 13 H 0.104 0.896 14 C 0.157 3.843 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.581 5.581 20 C 0.563 3.437 21 O -0.525 6.525 22 C -0.110 4.110 23 C -0.048 4.048 24 C -0.172 4.172 25 C 0.128 3.872 26 N -0.282 5.282 27 N -0.318 5.318 28 C 0.082 3.918 29 C -0.264 4.264 30 C 0.126 3.874 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -22.499 -3.551 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.055 3.945 11 C -0.191 4.191 12 C 0.027 3.973 13 H 0.122 0.878 14 C 0.048 3.952 15 H 0.079 0.921 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.020 4.020 19 N -0.313 5.313 20 C 0.350 3.650 21 O -0.402 6.402 22 C -0.115 4.115 23 C -0.071 4.071 24 C -0.194 4.194 25 C 0.003 3.997 26 N -0.050 5.050 27 N -0.141 5.141 28 C -0.096 4.096 29 C -0.293 4.293 30 C 0.007 3.993 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.166 0.834 43 H 0.177 0.823 44 H 0.186 0.814 45 H 0.212 0.788 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.008 -23.325 -3.181 23.562 hybrid contribution 0.377 1.710 0.076 1.753 sum 1.385 -21.614 -3.105 21.880 Atomic orbital electron populations 1.69959 1.04861 1.24952 1.57064 1.24791 0.95709 0.97619 1.02222 0.86052 0.78733 0.83807 0.77209 1.20516 1.21819 1.21757 1.19079 0.90457 0.82163 1.43684 0.90370 1.44723 1.01470 0.99303 1.86761 1.21179 0.84345 0.87621 1.01332 1.23142 0.96320 0.99893 0.99767 1.21816 0.96722 0.77404 1.01391 0.87766 1.21344 0.94559 0.86105 0.93196 0.92136 1.22123 1.02002 0.93009 0.99844 1.21916 0.97389 0.97124 1.00717 1.21976 0.98757 0.99083 0.82149 1.47533 1.69222 1.06632 1.07878 1.17776 0.77371 0.84364 0.85528 1.90835 1.49201 1.81674 1.18474 1.20461 0.98159 0.93783 0.99142 1.21695 0.96647 0.95486 0.93286 1.20630 1.01256 0.93459 1.04015 1.21472 0.88819 1.00874 0.88582 1.46194 1.24348 1.06878 1.27565 1.77856 1.03964 1.19635 1.12631 1.23908 0.98281 0.90713 0.96688 1.21375 1.01717 1.00454 1.05782 1.20147 0.97454 0.84062 0.97654 0.93786 0.93000 0.93960 0.91963 0.92208 0.92057 0.91792 0.91275 0.91805 0.91038 0.90094 0.83361 0.82278 0.81442 0.78805 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.33 55.49 0.57 -26.01 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.11 10.29 -15.06 -0.16 -6.27 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.63 2.91 -162.19 -0.47 -15.10 16 10 C 0.18 4.24 5.19 -2.88 -0.01 4.23 16 11 C -0.15 -2.79 6.08 -25.16 -0.15 -2.94 16 12 C 0.13 2.38 3.10 -67.29 -0.21 2.17 16 13 H 0.10 2.17 6.97 -51.93 -0.36 1.81 16 14 C 0.16 3.10 3.60 -66.35 -0.24 2.86 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 16 C -0.13 -2.18 5.11 -26.86 -0.14 -2.32 16 17 C -0.13 -1.68 6.10 -26.63 -0.16 -1.84 16 18 C 0.10 1.19 5.25 -3.64 -0.02 1.17 16 19 N -0.58 -8.62 2.73 -166.33 -0.45 -9.07 16 20 C 0.56 8.79 7.10 -12.59 -0.09 8.70 16 21 O -0.53 -10.21 16.44 5.25 0.09 -10.12 16 22 C -0.11 -1.38 4.70 -102.68 -0.48 -1.87 16 23 C -0.05 -0.42 7.89 -38.75 -0.31 -0.73 16 24 C -0.17 -1.11 9.90 -40.14 -0.40 -1.50 16 25 C 0.13 1.02 11.12 -16.73 -0.19 0.83 16 26 N -0.28 -3.32 3.89 -9.42 -0.04 -3.36 16 27 N -0.32 -3.93 12.66 30.51 0.39 -3.55 16 28 C 0.08 0.90 11.95 -17.51 -0.21 0.70 16 29 C -0.26 -3.44 10.79 -39.36 -0.42 -3.87 16 30 C 0.13 1.66 6.88 -82.19 -0.57 1.10 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 33 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.99 6.83 -51.93 -0.35 0.63 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.75 7.54 -51.93 -0.39 0.36 16 41 H 0.08 0.79 5.38 -51.93 -0.28 0.51 16 42 H 0.15 1.05 7.76 -52.49 -0.41 0.64 16 43 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 44 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -33.88 365.95 -9.56 -43.44 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.29 Total: 1.26 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.84 Total: 0.12 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.00 Total: -57.09 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.88 -9.56 -43.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.216 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds