Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48494 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47499 * 300.00491 * 3 2 1 6 6 H 1.48499 * 109.46889 * 60.00405 * 3 2 1 7 7 C 1.38809 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99892 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.47125 * 125.76081 * 0.02562 * 9 7 2 11 11 C 1.54567 * 107.25003 * 182.59273 * 10 9 7 12 12 C 1.54425 * 102.44924 * 21.66668 * 11 10 9 13 13 H 1.08994 * 110.00472 * 80.26267 * 12 11 10 14 14 C 1.48208 * 125.76908 * 180.02562 * 9 7 2 15 15 H 1.08997 * 111.53046 * 32.97812 * 14 9 7 16 16 C 1.53019 * 107.11337 * 270.86380 * 14 9 7 17 17 C 1.52730 * 110.80349 * 191.93578 * 16 14 9 18 18 C 1.53465 * 108.61855 * 63.66322 * 17 16 14 19 19 N 1.45123 * 111.59815 * 203.42605 * 12 11 10 20 20 C 1.34782 * 119.57411 * 248.67033 * 19 12 11 21 21 O 1.21630 * 120.00165 * 354.20430 * 20 19 12 22 22 C 1.47256 * 119.99828 * 174.19808 * 20 19 12 23 23 C 1.38938 * 120.90929 * 306.08533 * 22 20 19 24 24 C 1.39769 * 119.18969 * 179.97438 * 23 22 20 25 25 C 1.35066 * 121.27646 * 0.02562 * 24 23 22 26 26 N 1.36225 * 121.77045 * 0.02562 * 25 24 23 27 27 N 1.40083 * 132.48734 * 179.97438 * 26 25 24 28 28 C 1.31363 * 108.87913 * 179.25156 * 27 26 25 29 29 C 1.38880 * 108.94677 * 0.65196 * 28 27 26 30 30 C 1.37190 * 120.18982 * 359.68971 * 26 25 24 31 31 H 0.97003 * 120.00322 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.88585 * 302.00080 * 10 9 7 33 33 H 1.08998 * 109.88404 * 63.02694 * 10 9 7 34 34 H 1.08996 * 110.81200 * 139.90352 * 11 10 9 35 35 H 1.08999 * 110.81542 * 263.42688 * 11 10 9 36 36 H 1.08999 * 109.20562 * 71.59887 * 16 14 9 37 37 H 1.08993 * 109.20937 * 312.27898 * 16 14 9 38 38 H 1.09005 * 109.64144 * 183.45315 * 17 16 14 39 39 H 1.08997 * 109.64393 * 303.87055 * 17 16 14 40 40 H 1.09007 * 109.83394 * 61.54271 * 18 17 16 41 41 H 1.09002 * 109.83519 * 182.49670 * 18 17 16 42 42 H 1.07998 * 120.40224 * 359.95589 * 23 22 20 43 43 H 1.08001 * 119.35503 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.11261 * 179.97438 * 25 24 23 45 45 H 1.07999 * 125.52899 * 180.02562 * 28 27 26 46 46 H 1.08002 * 126.22036 * 179.46425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1382 -2.5358 -0.0005 11 6 -0.4462 -4.0491 0.0662 12 6 0.8583 -4.6285 0.6556 13 1 0.8714 -4.4928 1.7370 14 6 1.9339 -3.7395 -0.0005 15 1 2.8737 -3.7552 0.5514 16 6 2.1389 -4.1411 -1.4628 17 6 2.4846 -5.6245 -1.5746 18 6 1.2913 -6.4454 -1.0674 19 7 1.0224 -6.0295 0.3145 20 6 0.9296 -6.9647 1.2807 21 8 0.8152 -6.6281 2.4439 22 6 0.9667 -8.3939 0.9281 23 6 0.0919 -8.9193 -0.0148 24 6 0.1589 -10.2810 -0.3227 25 6 1.0556 -11.0926 0.2786 26 7 1.9336 -10.6261 1.2099 27 7 2.9374 -11.2514 1.9607 28 6 3.5233 -10.3528 2.7189 29 6 2.9201 -9.1202 2.5054 30 6 1.9298 -9.2992 1.5581 31 1 -0.4851 0.8400 0.0004 32 1 -0.5617 -2.0327 0.8687 33 1 -0.5538 -2.1105 -0.9140 34 1 -1.2900 -4.2437 0.7281 35 1 -0.6330 -4.4506 -0.9297 36 1 2.9513 -3.5506 -1.8863 37 1 1.2237 -3.9430 -2.0207 38 1 2.6864 -5.8763 -2.6159 39 1 3.3636 -5.8426 -0.9681 40 1 0.4163 -6.2475 -1.6867 41 1 1.5337 -7.5077 -1.0971 42 1 -0.6312 -8.2832 -0.5037 43 1 -0.5196 -10.6921 -1.0555 44 1 1.0765 -12.1395 0.0146 45 1 4.3351 -10.5436 3.4052 46 1 3.1783 -8.1907 2.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049567173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = 94.764766 kcal Electronic energy + Delta-G solvation = -30118.613977 eV Core-core repulsion = 26203.529603 eV Total energy + Delta-G solvation = -3915.084374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.97479 -41.65090 -39.51220 -38.03632 -36.78039 -34.42924 -33.82256 -33.55341 -31.69792 -30.92172 -29.96980 -29.36641 -26.82777 -26.07391 -25.07340 -23.74466 -23.33669 -22.86451 -21.96655 -21.42830 -19.63650 -18.83562 -18.64263 -18.42165 -17.53123 -17.10077 -16.79286 -16.59747 -16.48025 -16.13791 -15.84216 -15.44339 -15.11689 -15.01123 -14.87899 -14.38047 -14.21159 -14.05495 -13.79999 -13.53768 -13.33256 -13.10043 -13.07904 -12.87380 -12.76639 -12.63685 -12.35538 -12.29496 -12.04968 -11.95609 -11.93378 -11.67810 -11.57720 -11.42296 -11.19509 -10.92591 -10.71853 -10.39126 -9.68070 -8.89267 -8.66550 -7.84407 -5.19859 -0.54132 0.07906 1.12785 1.45187 1.46456 1.51113 1.56246 1.69191 1.85261 2.33011 2.49427 3.16068 3.33308 3.35578 3.47952 3.56758 3.82944 3.85311 3.91956 3.97411 4.04373 4.10310 4.12778 4.35169 4.36841 4.52044 4.55445 4.57223 4.60171 4.65713 4.77185 4.82160 4.84710 4.94137 4.97323 5.05541 5.06469 5.17470 5.29397 5.34675 5.40755 5.50941 5.54772 5.61019 5.65449 5.75277 5.83789 6.18634 6.32058 6.47198 7.01777 7.09826 7.75223 8.40259 9.25608 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002846 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.375632 B = 9837.238653 C =10136.762544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.191 3.809 11 C -0.131 4.131 12 C 0.147 3.853 13 H 0.068 0.932 14 C 0.151 3.849 15 H 0.043 0.957 16 C -0.117 4.117 17 C -0.124 4.124 18 C 0.101 3.899 19 N -0.578 5.578 20 C 0.566 3.434 21 O -0.578 6.578 22 C -0.153 4.153 23 C -0.016 4.016 24 C -0.156 4.156 25 C 0.123 3.877 26 N -0.287 5.287 27 N -0.340 5.340 28 C 0.088 3.912 29 C -0.305 4.305 30 C 0.115 3.885 31 H 0.246 0.754 32 H 0.009 0.991 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.203 0.797 45 H 0.224 0.776 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -26.066 -6.463 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.343 5.343 10 C 0.065 3.935 11 C -0.170 4.170 12 C 0.041 3.959 13 H 0.086 0.914 14 C 0.044 3.956 15 H 0.061 0.939 16 C -0.157 4.157 17 C -0.162 4.162 18 C -0.019 4.019 19 N -0.308 5.308 20 C 0.355 3.645 21 O -0.458 6.458 22 C -0.158 4.158 23 C -0.039 4.039 24 C -0.177 4.177 25 C -0.001 4.001 26 N -0.054 5.054 27 N -0.163 5.163 28 C -0.089 4.089 29 C -0.334 4.334 30 C -0.004 4.004 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.192 0.808 43 H 0.228 0.772 44 H 0.220 0.780 45 H 0.240 0.760 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.596 -26.954 -6.131 27.649 hybrid contribution 0.485 2.722 0.950 2.923 sum 1.081 -24.233 -5.181 24.804 Atomic orbital electron populations 1.70169 1.06158 1.25129 1.58418 1.25586 0.96588 1.00764 1.02784 0.85050 0.78161 0.79713 0.76655 1.19183 1.21692 1.22258 1.19405 0.90819 0.83535 1.42615 0.90314 1.44970 1.02136 1.00470 1.86770 1.20878 0.83815 0.90799 0.97994 1.22946 0.96502 0.95895 1.01671 1.21266 0.95877 0.79646 0.99113 0.91373 1.21534 0.94061 0.84508 0.95519 0.93865 1.21890 1.01279 0.96124 0.96437 1.21878 0.97696 0.93726 1.02948 1.22300 0.99228 1.00409 0.80006 1.47500 1.69010 1.04776 1.09527 1.18274 0.75811 0.85809 0.84644 1.90802 1.51461 1.82784 1.20791 1.20109 1.01290 0.91616 1.02806 1.22189 0.94327 0.96981 0.90362 1.21224 1.00808 0.91885 1.03755 1.22409 0.87691 1.03008 0.87034 1.46477 1.24720 1.06193 1.28055 1.77779 1.04860 1.20112 1.13512 1.24328 0.98412 0.89649 0.96485 1.21398 1.03703 1.00733 1.07567 1.20274 0.97464 0.85090 0.97594 0.94428 0.97295 0.96639 0.91150 0.89127 0.93468 0.92255 0.87693 0.92452 0.88475 0.87239 0.80773 0.77184 0.78000 0.75970 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.33 21.65 0.22 -57.06 16 2 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.23 -13.20 10.29 84.03 0.86 -12.33 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -31.59 2.91 -667.06 -1.94 -33.53 16 10 C 0.19 9.39 5.19 86.79 0.45 9.84 16 11 C -0.13 -4.80 6.08 31.61 0.19 -4.61 16 12 C 0.15 5.44 3.10 46.14 0.14 5.59 16 13 H 0.07 3.04 6.97 -2.39 -0.02 3.02 16 14 C 0.15 6.16 3.60 45.08 0.16 6.32 16 15 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.12 -3.84 5.11 30.51 0.16 -3.68 16 17 C -0.12 -2.76 6.10 30.66 0.19 -2.57 16 18 C 0.10 1.95 5.25 86.48 0.45 2.40 16 19 N -0.58 -16.45 2.73 -798.40 -2.18 -18.63 16 20 C 0.57 17.54 7.10 86.61 0.61 18.15 16 21 O -0.58 -23.68 16.44 -4.13 -0.07 -23.75 16 22 C -0.15 -3.54 4.70 -18.61 -0.09 -3.63 16 23 C -0.02 -0.20 7.89 22.81 0.18 -0.02 16 24 C -0.16 -1.02 9.90 21.91 0.22 -0.80 16 25 C 0.12 1.37 11.12 83.28 0.93 2.29 16 26 N -0.29 -6.07 3.89 -183.71 -0.71 -6.79 16 27 N -0.34 -7.93 12.66 -57.39 -0.73 -8.66 16 28 C 0.09 1.94 11.95 84.92 1.01 2.96 16 29 C -0.30 -8.28 10.79 22.42 0.24 -8.03 16 30 C 0.12 2.96 6.88 40.43 0.28 3.24 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 33 H 0.02 0.83 7.59 -2.39 -0.02 0.81 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 2.77 6.83 -2.39 -0.02 2.76 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 2.01 7.12 -2.39 -0.02 1.99 16 38 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.46 7.54 -2.38 -0.02 1.44 16 41 H 0.11 1.57 5.38 -2.39 -0.01 1.56 16 42 H 0.17 1.33 7.76 -2.91 -0.02 1.31 16 43 H 0.21 -0.67 8.06 -2.91 -0.02 -0.69 16 44 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -82.39 365.95 4.07 -78.32 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.00 Total: 9.87 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.46 Total: 11.90 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.34 Total: -124.68 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.07 Total: -23.75 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -82.39 4.07 -78.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.081 kcal (2) G-P(sol) polarization free energy of solvation -82.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds