Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48503 * 109.47361 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47324 * 119.99913 * 3 2 1 6 6 H 1.48499 * 109.46733 * 239.99732 * 3 2 1 7 7 C 1.38811 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.48382 * 126.56227 * 359.69388 * 9 7 2 11 11 C 1.55410 * 107.00518 * 185.38173 * 10 9 7 12 12 C 1.53436 * 101.57783 * 22.96994 * 11 10 9 13 13 H 1.08996 * 111.75144 * 78.02060 * 12 11 10 14 14 C 1.45025 * 126.55902 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70789 * 263.50405 * 14 9 7 16 16 C 1.51082 * 119.19158 * 28.78596 * 14 9 7 17 17 C 1.53870 * 107.33626 * 183.89553 * 16 14 9 18 18 C 1.52710 * 111.52989 * 303.07974 * 17 16 14 19 19 N 1.45728 * 116.36994 * 207.06356 * 12 11 10 20 20 C 1.34772 * 122.22922 * 350.08148 * 19 12 11 21 21 O 1.21627 * 120.00180 * 355.26521 * 20 19 12 22 22 C 1.47261 * 119.99478 * 175.26338 * 20 19 12 23 23 C 1.38928 * 120.90691 * 52.45431 * 22 20 19 24 24 C 1.39768 * 119.19186 * 179.97438 * 23 22 20 25 25 C 1.35071 * 121.27614 * 359.97438 * 24 23 22 26 26 N 1.36230 * 121.76525 * 0.03858 * 25 24 23 27 27 N 1.40081 * 132.48517 * 179.97438 * 26 25 24 28 28 C 1.31359 * 108.88204 * 180.02562 * 27 26 25 29 29 C 1.38875 * 108.94633 * 359.97438 * 28 27 26 30 30 C 1.37183 * 120.19172 * 359.66666 * 26 25 24 31 31 H 0.97003 * 120.00397 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.95897 * 304.89439 * 10 9 7 33 33 H 1.08997 * 109.96419 * 66.13226 * 10 9 7 34 34 H 1.09012 * 111.22240 * 264.82655 * 11 10 9 35 35 H 1.09000 * 110.87697 * 140.96874 * 11 10 9 36 36 H 1.08994 * 109.88382 * 303.35823 * 16 14 9 37 37 H 1.09001 * 109.88256 * 64.44152 * 16 14 9 38 38 H 1.09001 * 109.06729 * 63.60599 * 17 16 14 39 39 H 1.09003 * 109.06723 * 182.61382 * 17 16 14 40 40 H 1.08995 * 109.16503 * 168.93798 * 18 17 16 41 41 H 1.09009 * 109.15485 * 288.17576 * 18 17 16 42 42 H 1.08001 * 120.40569 * 0.02562 * 23 22 20 43 43 H 1.08004 * 119.36686 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.11829 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.52626 * 180.02562 * 28 27 26 46 46 H 1.08003 * 126.21680 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6966 1.2124 6 1 3.1038 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1484 -2.5576 0.0064 11 6 -0.4302 -4.0798 0.1432 12 6 0.8711 -4.5773 0.7861 13 1 0.9031 -4.3599 1.8537 14 6 1.9026 -3.7186 0.0005 15 1 1.9345 -4.0858 -1.0252 16 6 3.2563 -3.9347 0.6357 17 6 3.6454 -5.4041 0.3968 18 6 2.5923 -6.3602 0.9525 19 7 1.2344 -5.9638 0.5226 20 6 0.3890 -6.8274 -0.0740 21 8 -0.7483 -6.4835 -0.3341 22 6 0.8424 -8.1873 -0.4110 23 6 1.4312 -9.0015 0.5484 24 6 1.8479 -10.2864 0.1895 25 6 1.6884 -10.7492 -1.0694 26 7 1.1172 -9.9899 -2.0457 27 7 0.8457 -10.2352 -3.3978 28 6 0.2778 -9.1707 -3.9173 29 6 0.1573 -8.1983 -2.9332 30 6 0.6787 -8.7208 -1.7647 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5815 -2.0199 0.8499 33 1 -0.5695 -2.1861 -0.9278 34 1 -0.5853 -4.5417 -0.8320 35 1 -1.2828 -4.2597 0.7981 36 1 3.9919 -3.2765 0.1736 37 1 3.1997 -3.7355 1.7058 38 1 3.7513 -5.5748 -0.6746 39 1 4.5994 -5.6037 0.8849 40 1 2.8007 -7.3688 0.5956 41 1 2.6387 -6.3496 2.0416 42 1 1.5646 -8.6462 1.5596 43 1 2.3064 -10.9216 0.9330 44 1 2.0227 -11.7479 -1.3085 45 1 -0.0440 -9.0686 -4.9432 46 1 -0.2707 -7.2145 -3.0572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = 123.770461 kcal Electronic energy + Delta-G solvation = -30322.596743 eV Core-core repulsion = 26408.770151 eV Total energy + Delta-G solvation = -3913.826592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10815 -40.34281 -37.92530 -37.19065 -35.45637 -33.16663 -32.65874 -31.98465 -30.89811 -29.24361 -28.57506 -28.11976 -25.56101 -24.48287 -23.79404 -22.91837 -21.93130 -21.50936 -20.83460 -19.73765 -19.11720 -17.58611 -17.35225 -16.63327 -16.23587 -15.89533 -15.83481 -15.43870 -15.07426 -14.65236 -14.49884 -14.19705 -14.06447 -13.83361 -13.40375 -13.37433 -12.98864 -12.49749 -12.47395 -12.38154 -12.25452 -12.07321 -11.82836 -11.57015 -11.14541 -11.01910 -10.84136 -10.76590 -10.62415 -10.49757 -10.39369 -10.11782 -10.03435 -9.85898 -9.61305 -9.58437 -9.17358 -8.59159 -8.29296 -7.80775 -6.82790 -5.69417 -3.03818 0.23531 0.87345 1.95810 2.54949 2.61746 2.94564 3.27379 3.41055 3.45419 3.46924 3.98439 4.16760 4.37656 4.41890 4.49958 4.64690 4.80314 5.04379 5.05509 5.20880 5.25121 5.33639 5.38565 5.41565 5.46491 5.58989 5.62276 5.71073 5.74686 5.83870 5.84552 5.97237 5.99684 6.07572 6.23315 6.27979 6.37225 6.42185 6.53159 6.60406 6.69894 6.76156 6.87656 7.14308 7.32830 7.55568 7.60083 7.67223 7.84100 8.24820 8.28845 9.19824 9.83681 10.51701 11.42556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.003103 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.666712 B = 9021.695678 C = 9471.700591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.116 3.884 13 H 0.083 0.917 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.102 3.898 19 N -0.589 5.589 20 C 0.568 3.432 21 O -0.515 6.515 22 C -0.108 4.108 23 C -0.055 4.055 24 C -0.173 4.173 25 C 0.128 3.872 26 N -0.283 5.283 27 N -0.318 5.318 28 C 0.082 3.918 29 C -0.261 4.261 30 C 0.125 3.875 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.168 0.832 45 H 0.196 0.804 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -22.012 1.518 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.166 4.166 12 C 0.012 3.988 13 H 0.101 0.899 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.322 5.322 20 C 0.355 3.645 21 O -0.391 6.391 22 C -0.113 4.113 23 C -0.078 4.078 24 C -0.195 4.195 25 C 0.002 3.998 26 N -0.051 5.051 27 N -0.141 5.141 28 C -0.096 4.096 29 C -0.290 4.290 30 C 0.007 3.993 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.166 0.834 43 H 0.176 0.824 44 H 0.185 0.815 45 H 0.212 0.788 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.510 -22.785 0.973 23.461 hybrid contribution 0.284 1.635 0.182 1.669 sum 5.794 -21.150 1.154 21.960 Atomic orbital electron populations 1.69932 1.04877 1.25206 1.56632 1.24799 0.95663 0.97605 1.02198 0.86231 0.78478 0.83380 0.77840 1.21614 1.21195 1.21216 1.18934 0.90296 0.82207 1.44171 0.90414 1.44071 1.01777 0.99274 1.86514 1.21735 0.83617 0.88650 1.01200 1.22924 0.94613 0.97917 1.01166 1.22508 0.98976 0.77880 0.99424 0.89949 1.20759 0.91338 0.87197 0.95702 0.96521 1.21432 0.98570 0.94119 1.01300 1.21897 0.97593 0.95717 1.01609 1.21962 0.81671 0.98986 0.99479 1.47937 1.14152 1.11352 1.58744 1.17599 0.85212 0.83459 0.78260 1.90851 1.18261 1.76687 1.53291 1.20562 1.03329 0.96297 0.91150 1.21678 0.93476 0.93139 0.99470 1.20609 1.06196 0.97435 0.95287 1.21457 0.94883 0.97021 0.86395 1.46192 1.39503 1.10770 1.08592 1.77847 1.26912 1.23717 0.85642 1.23917 0.95045 0.90120 1.00492 1.21413 1.13707 1.03376 0.90476 1.20126 0.99018 0.85944 0.94241 0.93648 0.92511 0.94176 0.90357 0.91848 0.91392 0.91688 0.91845 0.90841 0.89999 0.91181 0.83441 0.82374 0.81500 0.78773 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.46 55.49 0.58 -26.45 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.22 9.94 -15.06 -0.15 -6.37 16 8 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 9 N -0.59 -14.96 3.35 -163.31 -0.55 -15.51 16 10 C 0.17 4.30 5.46 -1.73 -0.01 4.29 16 11 C -0.13 -2.67 4.94 -25.23 -0.12 -2.79 16 12 C 0.12 2.14 3.32 -66.78 -0.22 1.92 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.26 2.58 -68.35 -0.18 3.08 16 15 H 0.02 0.39 8.04 -51.93 -0.42 -0.03 16 16 C -0.12 -1.92 5.45 -27.24 -0.15 -2.06 16 17 C -0.13 -1.59 5.92 -26.43 -0.16 -1.74 16 18 C 0.10 1.14 5.51 -3.45 -0.02 1.12 16 19 N -0.59 -8.92 2.91 -165.29 -0.48 -9.40 16 20 C 0.57 9.07 7.13 -12.60 -0.09 8.98 16 21 O -0.51 -9.98 14.06 5.25 0.07 -9.90 16 22 C -0.11 -1.40 5.19 -102.68 -0.53 -1.93 16 23 C -0.05 -0.48 7.58 -38.75 -0.29 -0.78 16 24 C -0.17 -1.14 9.90 -40.14 -0.40 -1.54 16 25 C 0.13 1.06 11.12 -16.72 -0.19 0.88 16 26 N -0.28 -3.49 3.89 -9.42 -0.04 -3.52 16 27 N -0.32 -4.14 12.66 30.51 0.39 -3.76 16 28 C 0.08 0.98 11.95 -17.52 -0.21 0.77 16 29 C -0.26 -3.65 10.79 -39.36 -0.42 -4.08 16 30 C 0.13 1.75 6.87 -82.19 -0.56 1.18 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.06 1.54 7.21 -51.93 -0.37 1.17 16 33 H 0.04 1.10 7.79 -51.93 -0.40 0.70 16 34 H 0.08 1.71 6.36 -51.92 -0.33 1.38 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 37 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.75 4.83 -51.93 -0.25 0.50 16 41 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.15 0.98 7.28 -52.49 -0.38 0.60 16 43 H 0.16 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.16 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -34.58 363.23 -9.68 -44.26 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.30 Total: 1.24 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.80 Total: 0.66 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.10 Total: -58.64 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.58 -9.68 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.031 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds