Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47243 * 274.99580 * 3 2 1 5 5 H 1.48504 * 109.46791 * 34.99183 * 3 2 1 6 6 H 1.48496 * 109.47270 * 154.98801 * 3 2 1 7 7 C 1.38806 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00370 * 174.32562 * 7 2 1 9 9 N 1.36943 * 120.00053 * 354.32767 * 7 2 1 10 10 C 1.48379 * 126.55798 * 6.95536 * 9 7 2 11 11 C 1.55470 * 106.97315 * 174.51326 * 10 9 7 12 12 C 1.53526 * 101.75397 * 337.19992 * 11 10 9 13 13 H 1.08998 * 112.12458 * 281.77448 * 12 11 10 14 14 C 1.45014 * 126.56233 * 186.99975 * 9 7 2 15 15 H 1.08999 * 108.70493 * 96.46870 * 14 9 7 16 16 C 1.51088 * 119.19897 * 331.18688 * 14 9 7 17 17 C 1.53868 * 107.34395 * 176.11675 * 16 14 9 18 18 C 1.52717 * 111.52627 * 56.93077 * 17 16 14 19 19 N 1.45724 * 116.31526 * 152.42024 * 12 11 10 20 20 C 1.34772 * 122.22797 * 10.40455 * 19 12 11 21 21 O 1.21596 * 120.00284 * 4.23076 * 20 19 12 22 22 C 1.47476 * 119.99781 * 184.23008 * 20 19 12 23 23 C 1.39003 * 120.29208 * 325.94043 * 22 20 19 24 24 C 1.38504 * 120.36196 * 179.97438 * 23 22 20 25 25 C 1.37833 * 120.79264 * 359.97438 * 24 23 22 26 26 C 1.39214 * 120.19310 * 359.73217 * 25 24 23 27 27 N 1.37219 * 133.64158 * 179.59215 * 26 25 24 28 28 H 0.97004 * 125.98241 * 0.75044 * 27 26 25 29 29 N 1.40027 * 108.03389 * 180.48368 * 27 26 25 30 30 C 1.30263 * 109.70488 * 0.24484 * 29 27 26 31 31 C 1.40682 * 119.79211 * 0.54496 * 26 25 24 32 32 H 0.96997 * 120.00338 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.96135 * 293.89220 * 10 9 7 34 34 H 1.09003 * 109.95982 * 55.09969 * 10 9 7 35 35 H 1.08997 * 110.98733 * 95.49690 * 11 10 9 36 36 H 1.09000 * 110.98545 * 219.26674 * 11 10 9 37 37 H 1.08993 * 109.88281 * 56.65232 * 16 14 9 38 38 H 1.09005 * 109.87811 * 295.57353 * 16 14 9 39 39 H 1.09003 * 109.07045 * 296.39984 * 17 16 14 40 40 H 1.09001 * 109.01242 * 177.41891 * 17 16 14 41 41 H 1.09000 * 109.15808 * 191.05547 * 18 17 16 42 42 H 1.08998 * 109.11964 * 71.83996 * 18 17 16 43 43 H 1.07991 * 119.81842 * 359.97438 * 23 22 20 44 44 H 1.07996 * 119.60396 * 179.97438 * 24 23 22 45 45 H 1.07991 * 119.89978 * 180.02562 * 25 24 23 46 46 H 1.07999 * 125.65116 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0864 -1.2043 -0.0930 9 7 1.3307 -2.3852 0.1162 10 6 -0.1424 -2.5630 0.1066 11 6 -0.4150 -4.0935 0.1264 12 6 0.8991 -4.6525 -0.4372 13 1 0.9545 -4.5565 -1.5215 14 6 1.9129 -3.7040 0.2736 15 1 1.9259 -3.9560 1.3340 16 6 3.2799 -3.9803 -0.3076 17 6 3.6701 -5.4122 0.0987 18 6 2.6322 -6.4300 -0.3693 19 7 1.2646 -5.9972 -0.0109 20 6 0.4109 -6.7953 0.6605 21 8 -0.7312 -6.4304 0.8626 22 6 0.8621 -8.1113 1.1499 23 6 1.7870 -8.8507 0.4219 24 6 2.2121 -10.0866 0.8805 25 6 1.7289 -10.6049 2.0627 26 6 0.8063 -9.8855 2.8173 27 7 0.1536 -10.1298 3.9993 28 1 0.2529 -10.9206 4.5523 29 7 -0.6762 -9.0350 4.2706 30 6 -0.5635 -8.1522 3.3194 31 6 0.3589 -8.6312 2.3640 32 1 -0.4850 0.8400 0.0004 33 1 -0.5793 -2.0957 0.9891 34 1 -0.5647 -2.1210 -0.7959 35 1 -0.5878 -4.4461 1.1432 36 1 -1.2538 -4.3490 -0.5210 37 1 4.0036 -3.2709 0.0936 38 1 3.2439 -3.9000 -1.3940 39 1 3.7553 -5.4638 1.1842 40 1 4.6347 -5.6571 -0.3460 41 1 2.8376 -7.3920 0.1001 42 1 2.7010 -6.5382 -1.4517 43 1 2.1762 -8.4594 -0.5063 44 1 2.9307 -10.6509 0.3048 45 1 2.0705 -11.5698 2.4069 46 1 -1.0884 -7.2096 3.2701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049630167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = 117.917456 kcal Electronic energy + Delta-G solvation = -30278.408000 eV Core-core repulsion = 26364.327603 eV Total energy + Delta-G solvation = -3914.080398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.78005 -40.31136 -37.92710 -37.11650 -35.40270 -32.88417 -32.61715 -32.07891 -30.24963 -30.03486 -28.76282 -28.08685 -25.34866 -24.45948 -23.35719 -22.77167 -22.08757 -21.40193 -20.83184 -19.78610 -19.31304 -17.63967 -17.36086 -16.63094 -15.81710 -15.73400 -15.52047 -15.28098 -14.89138 -14.82402 -14.40780 -14.31933 -14.15446 -13.77194 -13.53960 -13.30174 -12.83931 -12.45508 -12.44530 -12.16581 -12.08629 -11.99597 -11.68290 -11.46304 -11.14292 -10.99283 -10.82298 -10.64021 -10.55669 -10.44807 -10.32720 -10.07965 -9.98646 -9.83697 -9.57955 -9.10260 -8.91783 -8.55321 -8.29471 -8.18486 -6.79155 -5.69279 -3.02572 0.34740 1.11280 2.33224 2.47272 2.82180 3.08845 3.41502 3.47054 3.49187 3.62143 4.22358 4.46355 4.51717 4.56001 4.68108 4.73606 4.87773 4.94792 5.12292 5.22520 5.36940 5.38717 5.41522 5.46338 5.58894 5.60384 5.67335 5.79232 5.86615 5.93094 6.00856 6.04363 6.10418 6.19902 6.26548 6.31822 6.41259 6.44082 6.57409 6.73244 6.80311 6.90729 7.00934 7.18280 7.35066 7.60708 7.63590 7.71662 7.85827 8.27077 8.35994 9.21360 9.85478 10.54249 11.43527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.003108 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.268539 B = 9007.171592 C = 9708.212785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.077 3.923 19 N -0.588 5.588 20 C 0.556 3.444 21 O -0.522 6.522 22 C -0.039 4.039 23 C -0.144 4.144 24 C -0.074 4.074 25 C -0.127 4.127 26 C 0.122 3.878 27 N -0.510 5.510 28 H 0.441 0.559 29 N -0.252 5.252 30 C 0.093 3.907 31 C -0.134 4.134 32 H 0.252 0.748 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -23.463 1.339 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.165 4.165 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.045 4.045 19 N -0.320 5.320 20 C 0.343 3.657 21 O -0.399 6.399 22 C -0.045 4.045 23 C -0.163 4.163 24 C -0.095 4.095 25 C -0.149 4.149 26 C 0.005 3.995 27 N -0.225 5.225 28 H 0.286 0.714 29 N -0.066 5.066 30 C -0.103 4.103 31 C -0.143 4.143 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.168 0.832 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.160 -23.290 2.611 23.998 hybrid contribution 1.017 0.679 -0.499 1.321 sum 6.178 -22.612 2.111 23.535 Atomic orbital electron populations 1.69953 1.04909 1.25078 1.56500 1.24818 0.95647 0.97604 1.02157 0.86163 0.78712 0.83840 0.77418 1.21729 1.21674 1.20675 1.18979 0.90767 0.82291 1.43552 0.90392 1.44076 1.01778 1.00261 1.85574 1.21736 0.83714 0.88547 1.01201 1.22929 0.94499 0.97412 1.01674 1.22588 0.98905 0.79149 0.98271 0.90024 1.20837 0.91327 0.86806 0.96044 0.96477 1.21443 0.98498 0.94654 1.00935 1.21907 0.97736 0.95474 1.01686 1.22633 0.81551 0.99756 1.00556 1.47896 1.13312 1.15689 1.55120 1.18065 0.85291 0.83825 0.78472 1.90802 1.18132 1.73680 1.57322 1.19577 0.96296 0.94884 0.93756 1.21604 0.97766 0.95254 1.01699 1.20925 0.98714 0.94915 0.94954 1.20181 0.98669 1.00367 0.95721 1.18819 0.96278 0.95525 0.88916 1.46114 1.37631 1.19213 1.19548 0.71433 1.76821 1.11828 0.95355 1.22607 1.24133 0.96693 0.99466 0.89989 1.18657 1.02522 0.95607 0.97477 0.93724 0.93792 0.93162 0.90286 0.91910 0.91475 0.91818 0.91809 0.90913 0.87505 0.91218 0.83183 0.84526 0.85338 0.78307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.51 55.49 0.58 -26.54 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.25 9.95 -15.06 -0.15 -6.40 16 8 H 0.08 2.05 7.28 -52.48 -0.38 1.66 16 9 N -0.59 -15.04 3.35 -162.98 -0.55 -15.59 16 10 C 0.17 4.32 5.45 -1.69 -0.01 4.31 16 11 C -0.13 -2.64 4.93 -25.15 -0.12 -2.76 16 12 C 0.11 2.13 3.37 -66.48 -0.22 1.90 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.27 2.58 -68.10 -0.18 3.09 16 15 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 16 C -0.12 -1.94 5.42 -27.24 -0.15 -2.09 16 17 C -0.13 -1.57 5.92 -26.42 -0.16 -1.73 16 18 C 0.08 0.86 5.03 -3.45 -0.02 0.84 16 19 N -0.59 -8.91 2.90 -164.88 -0.48 -9.39 16 20 C 0.56 8.76 7.33 -12.50 -0.09 8.67 16 21 O -0.52 -9.75 12.88 5.28 0.07 -9.69 16 22 C -0.04 -0.50 5.59 -104.68 -0.59 -1.09 16 23 C -0.14 -1.33 7.52 -39.20 -0.29 -1.62 16 24 C -0.07 -0.53 10.00 -39.63 -0.40 -0.93 16 25 C -0.13 -0.99 10.06 -39.37 -0.40 -1.39 16 26 C 0.12 1.30 7.32 -84.17 -0.62 0.69 16 27 N -0.51 -5.19 7.45 32.35 0.24 -4.95 16 28 H 0.44 2.90 8.96 -182.65 -1.64 1.26 16 29 N -0.25 -3.29 12.58 30.81 0.39 -2.90 16 30 C 0.09 1.28 11.40 -17.10 -0.20 1.08 16 31 C -0.13 -1.77 5.95 -106.68 -0.64 -2.40 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 1.22 7.62 -51.93 -0.40 0.82 16 34 H 0.05 1.37 7.44 -51.93 -0.39 0.98 16 35 H 0.08 1.71 6.36 -51.93 -0.33 1.38 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 38 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 0.95 3.62 -51.93 -0.19 0.77 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.15 1.12 5.32 -52.49 -0.28 0.84 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.20 2.72 7.57 -52.49 -0.40 2.32 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -33.79 357.04 -11.03 -44.82 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.33 Total: 1.91 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -4.31 Total: -0.08 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.19 Total: -59.36 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.79 -11.03 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049630167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.738 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds