Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47290 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47187 * 299.99332 * 3 2 1 6 6 H 1.48502 * 109.47372 * 59.99649 * 3 2 1 7 7 C 1.38812 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.47118 * 125.76731 * 359.94261 * 9 7 2 11 11 C 1.54576 * 107.25391 * 177.44769 * 10 9 7 12 12 C 1.54415 * 102.44393 * 338.33060 * 11 10 9 13 13 H 1.08997 * 110.00231 * 279.74327 * 12 11 10 14 14 C 1.48221 * 125.76674 * 179.97438 * 9 7 2 15 15 H 1.08996 * 112.30814 * 326.50166 * 14 9 7 16 16 C 1.53012 * 107.11129 * 89.10491 * 14 9 7 17 17 C 1.52740 * 110.76436 * 168.09568 * 16 14 9 18 18 C 1.52994 * 109.21748 * 297.34950 * 17 16 14 19 19 N 1.45123 * 112.30035 * 156.92115 * 12 11 10 20 20 C 1.34775 * 119.58258 * 110.92021 * 19 12 11 21 21 O 1.21608 * 119.99875 * 355.89246 * 20 19 12 22 22 C 1.47469 * 120.00353 * 175.89454 * 20 19 12 23 23 C 1.39000 * 120.29763 * 54.76518 * 22 20 19 24 24 C 1.38493 * 120.36895 * 179.97438 * 23 22 20 25 25 C 1.37836 * 120.79283 * 0.02562 * 24 23 22 26 26 C 1.39214 * 120.19479 * 0.02562 * 25 24 23 27 27 N 1.37217 * 133.65061 * 179.97438 * 26 25 24 28 28 H 0.96994 * 125.98167 * 0.03173 * 27 26 25 29 29 N 1.40030 * 108.03342 * 180.02562 * 27 26 25 30 30 C 1.30264 * 109.70572 * 0.02562 * 29 27 26 31 31 C 1.40688 * 119.78801 * 359.70347 * 26 25 24 32 32 H 0.97004 * 119.99531 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88735 * 58.04178 * 10 9 7 34 34 H 1.08992 * 110.02013 * 296.93420 * 10 9 7 35 35 H 1.08995 * 110.81161 * 220.08510 * 11 10 9 36 36 H 1.09003 * 110.80578 * 96.56463 * 11 10 9 37 37 H 1.09002 * 109.21015 * 288.40356 * 16 14 9 38 38 H 1.08997 * 109.21402 * 47.77356 * 16 14 9 39 39 H 1.08995 * 109.64150 * 55.88534 * 17 16 14 40 40 H 1.08994 * 109.64179 * 176.52157 * 17 16 14 41 41 H 1.09001 * 108.51437 * 297.41973 * 18 17 16 42 42 H 1.09000 * 110.62004 * 176.88429 * 18 17 16 43 43 H 1.07999 * 119.80980 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.60644 * 180.02562 * 24 23 22 45 45 H 1.07993 * 119.90217 * 179.97438 * 25 24 23 46 46 H 1.08005 * 125.64475 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1382 -2.5358 0.0012 11 6 -0.4463 -4.0492 -0.0648 12 6 0.8579 -4.6288 -0.6545 13 1 0.8705 -4.4933 -1.7359 14 6 1.9339 -3.7396 0.0005 15 1 2.8705 -3.7718 -0.5560 16 6 2.1395 -4.1408 1.4627 17 6 2.4860 -5.6242 1.5737 18 6 1.3143 -6.4557 1.0477 19 7 1.0336 -6.0320 -0.3287 20 6 0.9387 -6.9582 -1.3032 21 8 0.6337 -6.6241 -2.4320 22 6 1.2048 -8.3768 -1.0007 23 6 0.5128 -9.0178 0.0203 24 6 0.7610 -10.3502 0.3053 25 6 1.6955 -11.0634 -0.4143 26 6 2.4056 -10.4492 -1.4422 27 7 3.3732 -10.8805 -2.3143 28 1 3.7493 -11.7737 -2.3519 29 7 3.7223 -9.8053 -3.1408 30 6 3.0223 -8.7560 -2.8155 31 6 2.1623 -9.0979 -1.7494 32 1 -0.4849 0.8401 -0.0004 33 1 -0.5621 -2.0331 -0.8681 34 1 -0.5556 -2.1121 0.9145 35 1 -1.2905 -4.2440 -0.7260 36 1 -0.6325 -4.4502 0.9315 37 1 2.9521 -3.5502 1.8858 38 1 1.2243 -3.9435 2.0209 39 1 3.3621 -5.8425 0.9632 40 1 2.6887 -5.8763 2.6145 41 1 0.4451 -6.2662 1.6775 42 1 1.5589 -7.5178 1.0653 43 1 -0.2232 -8.4740 0.5938 44 1 0.2159 -10.8362 1.1010 45 1 1.8779 -12.1016 -0.1796 46 1 3.0852 -7.7864 -3.2873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049630168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = 95.350031 kcal Electronic energy + Delta-G solvation = -30122.314832 eV Core-core repulsion = 26207.255838 eV Total energy + Delta-G solvation = -3915.058995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81730 -40.31293 -38.12612 -37.09500 -35.26214 -32.92535 -32.40982 -32.13970 -30.29291 -29.97250 -28.91975 -28.13734 -25.31577 -24.29491 -23.62050 -22.78329 -22.16578 -21.76171 -20.60205 -19.99124 -18.49085 -17.77400 -17.36852 -16.89040 -16.49787 -15.77039 -15.37427 -15.24611 -15.02432 -14.76040 -14.53013 -14.25236 -13.97233 -13.85696 -13.61081 -13.33973 -12.95494 -12.51181 -12.25720 -12.22262 -11.97629 -11.91182 -11.88135 -11.36106 -11.19737 -11.02532 -10.93530 -10.79338 -10.66067 -10.63822 -10.43699 -10.09701 -10.04252 -9.66868 -9.61422 -9.56725 -8.97284 -8.62332 -8.34963 -8.24559 -6.85741 -5.70708 -3.04771 0.35824 1.10900 2.26284 2.40831 2.69752 3.06318 3.40753 3.46461 3.48474 3.49026 4.19816 4.40694 4.49291 4.55166 4.64652 4.71863 4.92463 5.00887 5.13979 5.24312 5.35880 5.39098 5.39882 5.51929 5.54442 5.59634 5.64019 5.72789 5.87084 5.93874 6.01385 6.04645 6.10554 6.11900 6.21166 6.31615 6.36337 6.40806 6.51709 6.59365 6.73719 6.95790 6.96966 7.05997 7.28142 7.53775 7.56866 7.62639 7.83343 8.22051 8.27023 9.21077 9.80701 10.46438 11.40556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002905 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.294868 B = 9636.475179 C = 9979.809766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.129 3.871 13 H 0.102 0.898 14 C 0.157 3.843 15 H 0.060 0.940 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.097 3.903 19 N -0.580 5.580 20 C 0.551 3.449 21 O -0.530 6.530 22 C -0.034 4.034 23 C -0.128 4.128 24 C -0.070 4.070 25 C -0.130 4.130 26 C 0.125 3.875 27 N -0.509 5.509 28 H 0.441 0.559 29 N -0.249 5.249 30 C 0.087 3.913 31 C -0.140 4.140 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -23.940 3.489 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.025 3.975 13 H 0.120 0.880 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.026 4.026 19 N -0.311 5.311 20 C 0.338 3.662 21 O -0.407 6.407 22 C -0.041 4.041 23 C -0.149 4.149 24 C -0.091 4.091 25 C -0.152 4.152 26 C 0.008 3.992 27 N -0.224 5.224 28 H 0.286 0.714 29 N -0.063 5.063 30 C -0.108 4.108 31 C -0.148 4.148 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.268 -23.927 2.061 24.237 hybrid contribution -0.026 0.737 0.667 0.994 sum 3.242 -23.190 2.728 23.574 Atomic orbital electron populations 1.69967 1.04854 1.24925 1.57055 1.24792 0.95705 0.97607 1.02256 0.86056 0.78722 0.83841 0.77201 1.20529 1.21771 1.21831 1.19077 0.90445 0.82180 1.43672 0.90384 1.44699 1.01479 0.99264 1.86753 1.21170 0.84257 0.87697 1.01285 1.23112 0.96376 0.99756 0.99767 1.21808 0.96760 0.77608 1.01321 0.88029 1.21326 0.94492 0.86131 0.93227 0.92243 1.22109 1.01975 0.93031 0.99819 1.21837 0.97741 0.97021 1.00614 1.21990 0.98885 0.99493 0.82213 1.47520 1.68760 1.06781 1.08036 1.18274 0.77830 0.85058 0.85001 1.90824 1.47427 1.81202 1.21228 1.19444 0.95886 0.93652 0.95069 1.21143 1.01047 0.95325 0.97347 1.20900 0.96160 0.93544 0.98509 1.20166 0.98632 1.00338 0.96061 1.18793 0.92675 0.93868 0.93892 1.46096 1.34908 1.12449 1.28957 0.71363 1.76800 1.21106 0.94582 1.13850 1.24013 0.93026 0.98546 0.95237 1.18630 1.02062 0.93440 1.00690 0.93797 0.93018 0.94015 0.91928 0.92253 0.92081 0.91805 0.92085 0.91163 0.91326 0.89132 0.84585 0.84478 0.85290 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.33 55.49 0.57 -26.15 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.13 10.29 -15.06 -0.16 -6.29 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.71 2.91 -162.20 -0.47 -15.18 16 10 C 0.18 4.31 5.19 -2.88 -0.01 4.29 16 11 C -0.15 -2.84 6.11 -25.16 -0.15 -2.99 16 12 C 0.13 2.37 3.03 -67.31 -0.20 2.17 16 13 H 0.10 2.11 6.99 -51.93 -0.36 1.75 16 14 C 0.16 3.12 3.59 -66.36 -0.24 2.88 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.19 5.14 -26.86 -0.14 -2.33 16 17 C -0.13 -1.69 6.06 -26.87 -0.16 -1.86 16 18 C 0.10 1.14 5.21 -3.92 -0.02 1.12 16 19 N -0.58 -8.68 2.77 -166.62 -0.46 -9.15 16 20 C 0.55 8.54 7.02 -12.50 -0.09 8.45 16 21 O -0.53 -10.10 16.43 5.27 0.09 -10.01 16 22 C -0.03 -0.43 4.83 -104.68 -0.51 -0.93 16 23 C -0.13 -1.20 7.39 -39.21 -0.29 -1.49 16 24 C -0.07 -0.50 9.99 -39.63 -0.40 -0.90 16 25 C -0.13 -0.97 10.06 -39.37 -0.40 -1.37 16 26 C 0.12 1.27 7.32 -84.17 -0.62 0.65 16 27 N -0.51 -4.87 7.45 32.35 0.24 -4.63 16 28 H 0.44 2.66 8.96 -182.66 -1.64 1.03 16 29 N -0.25 -3.05 12.58 30.81 0.39 -2.67 16 30 C 0.09 1.12 11.84 -17.10 -0.20 0.92 16 31 C -0.14 -1.75 6.00 -106.68 -0.64 -2.39 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 34 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.02 6.92 -51.93 -0.36 0.66 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.76 7.61 -51.93 -0.40 0.36 16 42 H 0.09 0.88 4.73 -51.93 -0.25 0.64 16 43 H 0.14 1.10 7.38 -52.49 -0.39 0.71 16 44 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.20 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -33.07 363.56 -10.97 -44.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.46 Total: 1.66 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.32 Total: -0.36 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.27 Total: -57.77 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.07 -10.97 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049630168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.392 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds