Wall clock time and date at job start Sat Apr 11 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99642 * 2 1 4 4 H 1.48502 * 109.46715 * 239.99861 * 3 2 1 5 5 H 1.48502 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47011 * 119.99800 * 3 2 1 7 7 C 1.38814 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00098 * 0.02562 * 7 2 1 10 10 C 1.47116 * 125.76813 * 359.97438 * 9 7 2 11 11 C 1.54567 * 107.25696 * 182.59793 * 10 9 7 12 12 C 1.54430 * 102.44566 * 21.66857 * 11 10 9 13 13 H 1.09003 * 109.99849 * 80.25795 * 12 11 10 14 14 C 1.48208 * 125.76458 * 180.02562 * 9 7 2 15 15 H 1.08994 * 111.53237 * 32.96941 * 14 9 7 16 16 C 1.53011 * 107.10998 * 270.85970 * 14 9 7 17 17 C 1.52736 * 110.80793 * 191.93810 * 16 14 9 18 18 C 1.53467 * 108.61651 * 63.65783 * 17 16 14 19 19 N 1.45120 * 111.59939 * 203.42325 * 12 11 10 20 20 C 1.34778 * 119.57521 * 248.67335 * 19 12 11 21 21 O 1.21602 * 120.00320 * 354.23937 * 20 19 12 22 22 C 1.47470 * 119.99631 * 174.23226 * 20 19 12 23 23 C 1.39006 * 120.29483 * 305.96530 * 22 20 19 24 24 C 1.38504 * 120.35910 * 179.78046 * 23 22 20 25 25 C 1.37824 * 120.79504 * 0.45496 * 24 23 22 26 26 C 1.39218 * 120.19656 * 359.80859 * 25 24 23 27 27 N 1.37220 * 133.65232 * 179.97438 * 26 25 24 28 28 H 0.96996 * 125.98288 * 0.02562 * 27 26 25 29 29 N 1.40025 * 108.03365 * 180.02562 * 27 26 25 30 30 C 1.30262 * 109.70670 * 0.02562 * 29 27 26 31 31 C 1.40672 * 119.78877 * 359.97050 * 26 25 24 32 32 H 0.96995 * 119.99920 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.88863 * 302.01535 * 10 9 7 34 34 H 1.09003 * 109.88392 * 63.03154 * 10 9 7 35 35 H 1.08999 * 110.81365 * 139.90424 * 11 10 9 36 36 H 1.08999 * 110.81453 * 263.43404 * 11 10 9 37 37 H 1.09002 * 109.21599 * 71.59357 * 16 14 9 38 38 H 1.09002 * 109.21148 * 312.27610 * 16 14 9 39 39 H 1.08997 * 109.64527 * 183.44760 * 17 16 14 40 40 H 1.09004 * 109.64238 * 303.87042 * 17 16 14 41 41 H 1.08996 * 109.83415 * 61.55373 * 18 17 16 42 42 H 1.09000 * 109.83729 * 182.50695 * 18 17 16 43 43 H 1.08000 * 119.81538 * 359.97365 * 23 22 20 44 44 H 1.08002 * 119.60025 * 180.26240 * 24 23 22 45 45 H 1.08001 * 119.89832 * 179.78039 * 25 24 23 46 46 H 1.07997 * 125.64806 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1381 -2.5359 0.0005 11 6 -0.4461 -4.0491 0.0674 12 6 0.8584 -4.6285 0.6569 13 1 0.8714 -4.4926 1.7384 14 6 1.9340 -3.7395 0.0016 15 1 2.8734 -3.7549 0.5541 16 6 2.1399 -4.1417 -1.4603 17 6 2.4858 -5.6252 -1.5714 18 6 1.2921 -6.4458 -1.0645 19 7 1.0225 -6.0296 0.3161 20 6 0.9297 -6.9645 1.2824 21 8 0.8145 -6.6279 2.4452 22 6 0.9676 -8.3959 0.9295 23 6 0.0854 -8.9090 -0.0143 24 6 0.1229 -10.2522 -0.3501 25 6 1.0253 -11.1044 0.2490 26 6 1.9181 -10.6216 1.2019 27 7 2.9069 -11.2038 1.9544 28 1 3.1616 -12.1395 1.9348 29 7 3.4837 -10.2106 2.7554 30 6 2.8994 -9.0688 2.5282 31 6 1.8975 -9.2593 1.5520 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5616 -2.0326 0.8696 34 1 -0.5537 -2.1107 -0.9130 35 1 -1.2900 -4.2437 0.7293 36 1 -0.6328 -4.4508 -0.9285 37 1 2.9525 -3.5513 -1.8837 38 1 1.2251 -3.9439 -2.0190 39 1 2.6881 -5.8774 -2.6123 40 1 3.3644 -5.8431 -0.9641 41 1 0.4176 -6.2483 -1.6845 42 1 1.5345 -7.5081 -1.0934 43 1 -0.6311 -8.2561 -0.4905 44 1 -0.5655 -10.6370 -1.0880 45 1 1.0395 -12.1500 -0.0212 46 1 3.1418 -8.1315 3.0068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049630169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:44 Heat of formation + Delta-G solvation = 93.891463 kcal Electronic energy + Delta-G solvation = -30102.095937 eV Core-core repulsion = 26186.973694 eV Total energy + Delta-G solvation = -3915.122243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81051 -40.30164 -38.12250 -37.07243 -35.24481 -32.91685 -32.40606 -32.13201 -30.29081 -29.93468 -28.90922 -28.13986 -25.28127 -24.28291 -23.62745 -22.77801 -22.13910 -21.77422 -20.59838 -19.98228 -18.51372 -17.74491 -17.34033 -16.87870 -16.53888 -15.75023 -15.34837 -15.24927 -15.03700 -14.74509 -14.55555 -14.26822 -13.89760 -13.78186 -13.66006 -13.33315 -12.98921 -12.49625 -12.25730 -12.19982 -11.98542 -11.90916 -11.87350 -11.37039 -11.19780 -11.01876 -10.96093 -10.77857 -10.66187 -10.62474 -10.43741 -10.10321 -10.09088 -9.65934 -9.60940 -9.56813 -8.97275 -8.61260 -8.35058 -8.24644 -6.85307 -5.70147 -3.04217 0.35750 1.11958 2.26209 2.40868 2.70562 3.07387 3.41915 3.46383 3.47268 3.49611 4.19924 4.41048 4.49833 4.56466 4.65120 4.73120 4.93103 5.00201 5.17285 5.23929 5.36734 5.38462 5.40287 5.50521 5.55158 5.60116 5.63582 5.72805 5.87042 5.94979 6.01085 6.05981 6.10376 6.12429 6.21415 6.32784 6.36346 6.41656 6.50360 6.59946 6.74534 6.95787 6.97369 7.06703 7.28079 7.53959 7.56739 7.62372 7.83174 8.22752 8.27673 9.21554 9.81200 10.46982 11.41025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.002858 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.323887 B = 9795.787097 C =10103.343188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.152 4.152 12 C 0.130 3.870 13 H 0.104 0.896 14 C 0.156 3.844 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.582 5.582 20 C 0.551 3.449 21 O -0.530 6.530 22 C -0.035 4.035 23 C -0.126 4.126 24 C -0.070 4.070 25 C -0.130 4.130 26 C 0.124 3.876 27 N -0.509 5.509 28 H 0.441 0.559 29 N -0.250 5.250 30 C 0.087 3.913 31 C -0.141 4.141 32 H 0.253 0.747 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -23.875 -3.769 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.191 4.191 12 C 0.026 3.974 13 H 0.122 0.878 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.170 4.170 17 C -0.172 4.172 18 C -0.019 4.019 19 N -0.313 5.313 20 C 0.338 3.662 21 O -0.407 6.407 22 C -0.041 4.041 23 C -0.146 4.146 24 C -0.091 4.091 25 C -0.152 4.152 26 C 0.007 3.993 27 N -0.224 5.224 28 H 0.286 0.714 29 N -0.064 5.064 30 C -0.108 4.108 31 C -0.149 4.149 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.902 -23.994 -2.444 24.193 hybrid contribution -0.089 0.799 -0.624 1.018 sum 1.813 -23.195 -3.067 23.467 Atomic orbital electron populations 1.69943 1.04852 1.25165 1.56927 1.24789 0.95698 0.97590 1.02218 0.86207 0.78452 0.83257 0.77878 1.21237 1.21646 1.21158 1.18985 0.90391 0.82214 1.43905 0.90495 1.44703 1.01469 0.99290 1.86783 1.21174 0.84325 0.87675 1.01283 1.23136 0.96350 0.99826 0.99788 1.21793 0.96657 0.77625 1.01337 0.87811 1.21337 0.94552 0.86114 0.93208 0.92188 1.22124 1.01958 0.93072 0.99837 1.21923 0.97453 0.97090 1.00700 1.21965 0.98590 0.99252 0.82122 1.47532 1.69105 1.06642 1.07977 1.18300 0.77153 0.85172 0.85530 1.90818 1.49490 1.81882 1.18545 1.19454 0.95751 0.93087 0.95855 1.21137 0.99755 0.96069 0.97611 1.20904 0.97116 0.92655 0.98417 1.20167 0.96770 1.00448 0.97822 1.18793 0.92512 0.92623 0.95338 1.46094 1.30413 1.10604 1.35312 0.71374 1.76794 1.19314 0.96958 1.13326 1.24006 0.93369 0.97340 0.96104 1.18645 1.01214 0.92754 1.02301 0.93695 0.93046 0.94006 0.91986 0.92209 0.92141 0.91822 0.91327 0.91862 0.91146 0.89693 0.84645 0.84499 0.85306 0.78749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.33 55.49 0.57 -26.16 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.17 10.29 -15.06 -0.16 -6.33 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.72 2.91 -162.23 -0.47 -15.19 16 10 C 0.18 4.28 5.19 -2.88 -0.01 4.27 16 11 C -0.15 -2.82 6.08 -25.16 -0.15 -2.98 16 12 C 0.13 2.38 3.09 -67.31 -0.21 2.17 16 13 H 0.10 2.16 6.97 -51.93 -0.36 1.80 16 14 C 0.16 3.12 3.60 -66.37 -0.24 2.88 16 15 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -2.20 5.11 -26.86 -0.14 -2.34 16 17 C -0.13 -1.70 6.10 -26.62 -0.16 -1.86 16 18 C 0.10 1.22 5.20 -3.69 -0.02 1.20 16 19 N -0.58 -8.66 2.73 -166.36 -0.45 -9.12 16 20 C 0.55 8.51 6.99 -12.50 -0.09 8.42 16 21 O -0.53 -10.09 16.40 5.28 0.09 -10.00 16 22 C -0.04 -0.44 4.55 -104.67 -0.48 -0.91 16 23 C -0.13 -1.19 7.75 -39.20 -0.30 -1.49 16 24 C -0.07 -0.50 9.99 -39.63 -0.40 -0.90 16 25 C -0.13 -0.98 10.06 -39.37 -0.40 -1.37 16 26 C 0.12 1.26 7.32 -84.17 -0.62 0.64 16 27 N -0.51 -4.84 7.45 32.35 0.24 -4.60 16 28 H 0.44 2.64 8.96 -182.66 -1.64 1.00 16 29 N -0.25 -3.03 12.58 30.81 0.39 -2.64 16 30 C 0.09 1.11 11.82 -17.10 -0.20 0.91 16 31 C -0.14 -1.75 6.00 -106.68 -0.64 -2.39 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 1.37 7.30 -51.93 -0.38 1.00 16 34 H 0.04 1.09 7.59 -51.93 -0.39 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.01 6.83 -51.93 -0.35 0.65 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16 42 H 0.08 0.85 5.38 -51.93 -0.28 0.57 16 43 H 0.14 1.13 7.72 -52.49 -0.41 0.72 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.20 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -32.95 364.36 -10.98 -43.92 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.50 Total: 1.69 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -4.30 Total: -0.36 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.27 Total: -57.71 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -10.98 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049630169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.815 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds