Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48501 * 109.46979 * 89.99974 * 3 2 1 5 5 H 1.48500 * 109.46973 * 210.00027 * 3 2 1 6 6 H 1.48503 * 109.46996 * 329.99608 * 3 2 1 7 7 C 1.38819 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99694 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.48388 * 126.56322 * 359.69048 * 9 7 2 11 11 C 1.55405 * 107.00393 * 185.38042 * 10 9 7 12 12 C 1.53424 * 101.57781 * 22.97221 * 11 10 9 13 13 H 1.09000 * 111.75760 * 78.02043 * 12 11 10 14 14 C 1.45026 * 126.56243 * 179.97438 * 9 7 2 15 15 H 1.08992 * 108.70318 * 263.50778 * 14 9 7 16 16 C 1.51089 * 119.18608 * 28.78507 * 14 9 7 17 17 C 1.53872 * 107.33181 * 183.89937 * 16 14 9 18 18 C 1.52713 * 111.52276 * 303.07398 * 17 16 14 19 19 N 1.45726 * 116.37145 * 207.06096 * 12 11 10 20 20 C 1.34776 * 122.22830 * 350.07944 * 19 12 11 21 21 O 1.21595 * 119.99794 * 355.28698 * 20 19 12 22 22 C 1.47473 * 119.99915 * 175.28278 * 20 19 12 23 23 C 1.39002 * 120.29116 * 52.81693 * 22 20 19 24 24 C 1.38511 * 120.36694 * 179.76568 * 23 22 20 25 25 C 1.37833 * 120.78620 * 0.51195 * 24 23 22 26 26 C 1.39214 * 120.19353 * 359.74545 * 25 24 23 27 27 N 1.37218 * 133.64226 * 179.97438 * 26 25 24 28 28 H 0.97003 * 125.98267 * 0.02562 * 27 26 25 29 29 N 1.40029 * 108.03348 * 180.02562 * 27 26 25 30 30 C 1.30258 * 109.70273 * 0.02562 * 29 27 26 31 31 C 1.40675 * 119.79736 * 359.97438 * 26 25 24 32 32 H 0.96995 * 120.00301 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.95603 * 304.89872 * 10 9 7 34 34 H 1.08997 * 109.95959 * 66.13095 * 10 9 7 35 35 H 1.09002 * 111.22070 * 264.82672 * 11 10 9 36 36 H 1.09003 * 110.87078 * 140.97249 * 11 10 9 37 37 H 1.08999 * 109.88417 * 303.35821 * 16 14 9 38 38 H 1.08999 * 109.88057 * 64.44271 * 16 14 9 39 39 H 1.08995 * 109.06790 * 63.60328 * 17 16 14 40 40 H 1.09004 * 109.06222 * 182.62043 * 17 16 14 41 41 H 1.09001 * 109.15686 * 168.94136 * 18 17 16 42 42 H 1.09000 * 109.16146 * 288.17137 * 18 17 16 43 43 H 1.08003 * 119.82136 * 359.97438 * 23 22 20 44 44 H 1.07997 * 119.60664 * 180.24022 * 24 23 22 45 45 H 1.07990 * 119.90034 * 179.76714 * 25 24 23 46 46 H 1.08005 * 125.64305 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1486 -2.5577 0.0064 11 6 -0.4304 -4.0798 0.1432 12 6 0.8709 -4.5773 0.7860 13 1 0.9030 -4.3600 1.8536 14 6 1.9024 -3.7187 0.0005 15 1 1.9343 -4.0858 -1.0252 16 6 3.2561 -3.9349 0.6357 17 6 3.6452 -5.4043 0.3968 18 6 2.5920 -6.3603 0.9527 19 7 1.2341 -5.9638 0.5225 20 6 0.3887 -6.8274 -0.0740 21 8 -0.7481 -6.4834 -0.3343 22 6 0.8425 -8.1895 -0.4112 23 6 1.4229 -8.9958 0.5609 24 6 1.8453 -10.2771 0.2472 25 6 1.7085 -10.7716 -1.0321 26 6 1.1360 -9.9862 -2.0288 27 7 0.8706 -10.1898 -3.3596 28 1 1.0613 -10.9976 -3.8617 29 7 0.2762 -9.0274 -3.8659 30 6 0.1703 -8.1399 -2.9184 31 6 0.6960 -8.6846 -1.7268 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5815 -2.0200 0.8499 34 1 -0.5696 -2.1860 -0.9277 35 1 -0.5855 -4.5416 -0.8319 36 1 -1.2830 -4.2596 0.7981 37 1 3.9919 -3.2767 0.1736 38 1 3.1996 -3.7356 1.7058 39 1 3.7511 -5.5749 -0.6745 40 1 4.5991 -5.6039 0.8850 41 1 2.8004 -7.3688 0.5957 42 1 2.6385 -6.3497 2.0416 43 1 1.5421 -8.6226 1.5674 44 1 2.2910 -10.8945 1.0130 45 1 2.0462 -11.7713 -1.2618 46 1 -0.2507 -7.1511 -3.0265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049630170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 101.543056 kcal Electronic energy + Delta-G solvation = -30311.606663 eV Core-core repulsion = 26396.816218 eV Total energy + Delta-G solvation = -3914.790445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76374 -40.27638 -37.96150 -37.02523 -35.38191 -32.88301 -32.61994 -32.06430 -30.25876 -29.93340 -28.76016 -28.13980 -25.25777 -24.45188 -23.42269 -22.73978 -21.95677 -21.43890 -20.87965 -19.80517 -19.29844 -17.59355 -17.27212 -16.63203 -15.90940 -15.73642 -15.52626 -15.21933 -14.90858 -14.86230 -14.43448 -14.29575 -14.10459 -13.80513 -13.62295 -13.28680 -12.84994 -12.45966 -12.30790 -12.20641 -12.09374 -11.98916 -11.69515 -11.52537 -11.15199 -11.07945 -10.83095 -10.70129 -10.58613 -10.46097 -10.40232 -10.08136 -9.99987 -9.82887 -9.59331 -9.12782 -8.92708 -8.57768 -8.28800 -8.21131 -6.80751 -5.67996 -3.02138 0.39659 1.13988 2.31464 2.45440 2.77158 3.08365 3.41723 3.46660 3.48856 3.53817 4.22315 4.44574 4.51571 4.58302 4.67932 4.73561 4.89813 4.95376 5.11530 5.24402 5.37118 5.40079 5.42164 5.46393 5.58800 5.61841 5.67507 5.79394 5.87209 5.96267 6.01681 6.06859 6.09829 6.16761 6.27011 6.31481 6.41076 6.44348 6.56647 6.73088 6.79620 6.90246 7.00114 7.17453 7.33150 7.59555 7.63968 7.70130 7.86182 8.26861 8.34093 9.21554 9.85420 10.53540 11.44080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003118 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.902904 B = 8979.201674 C = 9427.878000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.101 3.899 19 N -0.589 5.589 20 C 0.557 3.443 21 O -0.520 6.520 22 C -0.034 4.034 23 C -0.131 4.131 24 C -0.071 4.071 25 C -0.131 4.131 26 C 0.125 3.875 27 N -0.510 5.510 28 H 0.441 0.559 29 N -0.249 5.249 30 C 0.089 3.911 31 C -0.139 4.139 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -23.394 1.096 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.166 4.166 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.322 5.322 20 C 0.344 3.656 21 O -0.397 6.397 22 C -0.040 4.040 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.153 4.153 26 C 0.008 3.992 27 N -0.225 5.225 28 H 0.286 0.714 29 N -0.063 5.063 30 C -0.106 4.106 31 C -0.148 4.148 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.333 -23.200 -0.359 23.808 hybrid contribution 0.802 0.603 0.608 1.173 sum 6.136 -22.598 0.249 23.417 Atomic orbital electron populations 1.69941 1.04869 1.25055 1.56778 1.24800 0.95662 0.97596 1.02277 0.86157 0.78602 0.83710 0.77504 1.21653 1.20748 1.21714 1.18982 0.90322 0.82209 1.43939 0.90370 1.44087 1.01792 0.99304 1.86496 1.21736 0.83620 0.88718 1.01169 1.22910 0.94661 0.97855 1.01141 1.22488 0.98863 0.78133 0.99388 0.90039 1.20760 0.91388 0.87170 0.95693 0.96531 1.21437 0.98536 0.94207 1.01265 1.21900 0.97659 0.95660 1.01588 1.21976 0.81525 0.99194 0.99445 1.47967 1.14299 1.11350 1.58550 1.18114 0.85258 0.84160 0.78075 1.90833 1.18326 1.76960 1.53544 1.19543 0.97543 0.94665 0.92286 1.21130 1.00232 0.94507 0.99288 1.20890 0.97747 0.95044 0.95502 1.20154 1.03678 0.99772 0.91686 1.18799 0.98925 0.95267 0.86258 1.46108 1.54983 1.15140 1.06223 0.71397 1.76811 1.13957 0.92765 1.22814 1.24039 0.97964 0.99806 0.88825 1.18640 1.07281 0.94530 0.94320 0.93724 0.92546 0.94202 0.90382 0.91864 0.91466 0.91734 0.91858 0.90907 0.89512 0.91334 0.84708 0.84576 0.85344 0.78667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.46 55.49 0.58 -26.52 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.19 9.94 -15.06 -0.15 -6.34 16 8 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 9 N -0.59 -14.99 3.35 -163.31 -0.55 -15.54 16 10 C 0.17 4.29 5.46 -1.72 -0.01 4.28 16 11 C -0.13 -2.65 4.94 -25.23 -0.12 -2.77 16 12 C 0.12 2.14 3.32 -66.79 -0.22 1.91 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.26 2.58 -68.35 -0.18 3.08 16 15 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 16 C -0.12 -1.93 5.45 -27.24 -0.15 -2.08 16 17 C -0.13 -1.60 5.92 -26.42 -0.16 -1.76 16 18 C 0.10 1.16 5.48 -3.45 -0.02 1.14 16 19 N -0.59 -8.96 2.91 -165.23 -0.48 -9.44 16 20 C 0.56 8.79 7.02 -12.50 -0.09 8.70 16 21 O -0.52 -9.87 14.00 5.28 0.07 -9.80 16 22 C -0.03 -0.44 5.03 -104.68 -0.53 -0.96 16 23 C -0.13 -1.24 7.44 -39.20 -0.29 -1.53 16 24 C -0.07 -0.52 10.00 -39.63 -0.40 -0.91 16 25 C -0.13 -1.02 10.06 -39.37 -0.40 -1.42 16 26 C 0.12 1.33 7.32 -84.17 -0.62 0.71 16 27 N -0.51 -5.17 7.45 32.35 0.24 -4.93 16 28 H 0.44 2.89 8.96 -182.65 -1.64 1.25 16 29 N -0.25 -3.24 12.58 30.81 0.39 -2.86 16 30 C 0.09 1.22 11.81 -17.10 -0.20 1.02 16 31 C -0.14 -1.82 5.99 -106.69 -0.64 -2.46 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 1.54 7.20 -51.93 -0.37 1.16 16 34 H 0.04 1.10 7.79 -51.93 -0.40 0.69 16 35 H 0.08 1.68 6.36 -51.93 -0.33 1.35 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 38 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.83 4.85 -51.93 -0.25 0.58 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.14 1.06 7.26 -52.48 -0.38 0.68 16 44 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.20 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -33.63 361.65 -11.09 -44.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.52 Total: 1.59 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -4.26 Total: 0.31 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.18 Total: -59.29 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.63 -11.09 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049630170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.273 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds