Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99367 * 2 1 4 4 H 1.48507 * 109.47271 * 240.00176 * 3 2 1 5 5 H 1.48501 * 109.47786 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47025 * 120.00454 * 3 2 1 7 7 C 1.38807 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.48386 * 126.56172 * 0.02562 * 9 7 2 11 11 C 1.55472 * 106.97548 * 174.47659 * 10 9 7 12 12 C 1.53428 * 101.67484 * 337.40013 * 11 10 9 13 13 H 1.09002 * 111.14746 * 282.01510 * 12 11 10 14 14 C 1.45025 * 126.56420 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.25888 * 96.07787 * 14 9 7 16 16 C 1.51088 * 119.18443 * 331.20952 * 14 9 7 17 17 C 1.53867 * 107.40193 * 176.06996 * 16 14 9 18 18 C 1.52430 * 110.97896 * 57.98387 * 17 16 14 19 19 N 1.45722 * 117.00764 * 152.97590 * 12 11 10 20 20 C 1.34780 * 122.22617 * 9.61559 * 19 12 11 21 21 O 1.21633 * 119.99969 * 354.59445 * 20 19 12 22 22 C 1.47225 * 119.99793 * 174.60269 * 20 19 12 23 23 C 1.38949 * 120.85828 * 315.33223 * 22 20 19 24 24 C 1.39744 * 119.29094 * 179.97438 * 23 22 20 25 25 C 1.35112 * 121.14600 * 0.02562 * 24 23 22 26 26 N 1.36155 * 121.71770 * 359.97438 * 25 24 23 27 27 C 1.36998 * 132.63765 * 180.02562 * 26 25 24 28 28 C 1.34961 * 107.14904 * 180.02562 * 27 26 25 29 29 N 1.33744 * 108.60308 * 0.02562 * 28 27 26 30 30 C 1.31982 * 109.17068 * 359.75603 * 29 28 27 31 31 H 0.96995 * 120.00302 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.95771 * 55.09718 * 10 9 7 33 33 H 1.08993 * 109.98802 * 293.87838 * 10 9 7 34 34 H 1.08991 * 110.98672 * 219.29931 * 11 10 9 35 35 H 1.08998 * 110.98194 * 95.49693 * 11 10 9 36 36 H 1.09004 * 109.88192 * 295.56938 * 16 14 9 37 37 H 1.09001 * 109.88329 * 56.57907 * 16 14 9 38 38 H 1.08999 * 109.07335 * 177.48893 * 17 16 14 39 39 H 1.08995 * 109.07102 * 296.44143 * 17 16 14 40 40 H 1.08995 * 108.43154 * 190.30565 * 18 17 16 41 41 H 1.09000 * 110.17951 * 70.89646 * 18 17 16 42 42 H 1.07995 * 120.35169 * 359.95554 * 23 22 20 43 43 H 1.08000 * 119.42504 * 179.97438 * 24 23 22 44 44 H 1.07993 * 119.14097 * 180.02562 * 25 24 23 45 45 H 1.07995 * 126.42909 * 0.05364 * 27 26 25 46 46 H 1.07999 * 125.69954 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 -0.0005 11 6 -0.4301 -4.0800 -0.1437 12 6 0.8714 -4.5775 -0.7860 13 1 0.8954 -4.3513 -1.8520 14 6 1.9026 -3.7186 -0.0016 15 1 1.9387 -4.0760 1.0275 16 6 3.2558 -3.9344 -0.6380 17 6 3.6472 -5.4033 -0.4003 18 6 2.6014 -6.3477 -0.9817 19 7 1.2450 -5.9637 -0.5360 20 6 0.4088 -6.8373 0.0591 21 8 -0.6603 -6.4550 0.4956 22 6 0.7894 -8.2542 0.1811 23 6 1.3485 -8.9369 -0.8923 24 6 1.6982 -10.2813 -0.7402 25 6 1.5014 -10.9264 0.4306 26 7 0.9570 -10.3003 1.5102 27 6 0.6628 -10.7256 2.7788 28 6 0.1309 -9.6746 3.4375 29 7 0.0929 -8.6261 2.6081 30 6 0.5919 -8.9802 1.4387 31 1 -0.4850 0.8400 0.0004 32 1 -0.5851 -2.0178 -0.8408 33 1 -0.5659 -2.1884 0.9361 34 1 -1.2823 -4.2593 -0.7990 35 1 -0.5855 -4.5415 0.8315 36 1 3.1984 -3.7345 -1.7080 37 1 3.9916 -3.2755 -0.1770 38 1 4.6016 -5.6011 -0.8881 39 1 3.7538 -5.5746 0.6708 40 1 2.8186 -7.3579 -0.6351 41 1 2.6403 -6.3271 -2.0709 42 1 1.5109 -8.4339 -1.8341 43 1 2.1326 -10.8141 -1.5731 44 1 1.7840 -11.9655 0.5124 45 1 0.8263 -11.7159 3.1772 46 1 -0.2083 -9.6796 4.4628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049779788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = 112.719221 kcal Electronic energy + Delta-G solvation = -30272.028481 eV Core-core repulsion = 26357.722671 eV Total energy + Delta-G solvation = -3914.305810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.90588 -40.30578 -37.89334 -37.27947 -35.41697 -33.72241 -32.57249 -32.04133 -30.51831 -29.30818 -28.64631 -28.10072 -25.50452 -24.41127 -23.77091 -22.90989 -22.11980 -21.44662 -20.86855 -19.73782 -19.22715 -17.80587 -17.40873 -16.54737 -16.21177 -16.12223 -15.83149 -15.35767 -14.99705 -14.69812 -14.42060 -14.23246 -14.11387 -13.78624 -13.72079 -13.25461 -13.10319 -12.65345 -12.46538 -12.38009 -12.18556 -12.13084 -11.76177 -11.54125 -11.21044 -10.94677 -10.79969 -10.62936 -10.46371 -10.41443 -10.15637 -10.06550 -9.93179 -9.78182 -9.54670 -9.09298 -8.96603 -8.51400 -8.21316 -8.10433 -6.75548 -5.63292 -2.97433 0.15852 1.01325 2.21795 2.60457 2.83863 3.08694 3.44614 3.44917 3.48987 3.50603 3.89207 4.06457 4.33682 4.43133 4.54579 4.57339 4.84599 4.92945 5.15095 5.17475 5.23539 5.28378 5.40737 5.44474 5.47900 5.51784 5.65601 5.67241 5.69020 5.81269 5.92441 6.04563 6.07426 6.14889 6.31076 6.35206 6.40788 6.45649 6.62278 6.75092 6.78762 6.85817 6.98678 7.27145 7.64506 7.68060 7.75466 7.76577 7.91327 8.32115 8.43288 9.26042 9.89926 10.58864 11.48671 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.003023 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.524712 B = 9260.789974 C = 9758.891168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.134 4.134 12 C 0.118 3.882 13 H 0.081 0.919 14 C 0.158 3.842 15 H 0.019 0.981 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.105 3.895 19 N -0.593 5.593 20 C 0.567 3.433 21 O -0.500 6.500 22 C -0.074 4.074 23 C -0.070 4.070 24 C -0.151 4.151 25 C 0.074 3.926 26 N -0.371 5.371 27 C -0.100 4.100 28 C 0.031 3.969 29 N -0.467 5.467 30 C 0.251 3.749 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.185 0.815 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -26.396 -2.569 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.099 0.901 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.326 5.326 20 C 0.354 3.646 21 O -0.375 6.375 22 C -0.080 4.080 23 C -0.094 4.094 24 C -0.172 4.172 25 C -0.049 4.049 26 N -0.044 5.044 27 C -0.230 4.230 28 C -0.119 4.119 29 N -0.185 5.185 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.181 0.819 45 H 0.202 0.798 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.635 -25.213 -2.032 25.915 hybrid contribution 0.894 -0.129 -0.147 0.915 sum 6.529 -25.342 -2.178 26.260 Atomic orbital electron populations 1.69939 1.04857 1.25116 1.56775 1.24797 0.95659 0.97567 1.02351 0.86235 0.78456 0.83455 0.77798 1.21241 1.21646 1.21253 1.18937 0.90279 0.82257 1.43951 0.90455 1.44077 1.01829 0.99293 1.86555 1.21727 0.83563 0.88693 1.01091 1.23034 0.94332 0.98036 1.01868 1.22406 0.98969 0.77951 0.99241 0.90079 1.20760 0.91312 0.87186 0.95838 0.96375 1.21442 0.98604 0.94159 1.01231 1.21857 0.97580 0.95859 1.01523 1.21889 0.81731 0.99018 0.99141 1.47872 1.14364 1.11121 1.59288 1.17524 0.84601 0.83832 0.78686 1.90855 1.23083 1.77568 1.45992 1.20333 1.02322 0.95157 0.90202 1.21673 0.95012 0.94243 0.98455 1.20618 1.04294 0.95128 0.97170 1.21611 0.98029 0.99136 0.86125 1.42907 1.40053 1.11390 1.10062 1.22672 1.13894 1.02707 0.83709 1.22686 1.00664 0.88283 1.00284 1.70783 1.19812 1.28656 0.99281 1.21582 1.01512 0.81515 0.94996 0.93701 0.92609 0.94221 0.92174 0.89384 0.91737 0.91508 0.91000 0.91668 0.90357 0.91069 0.83131 0.82647 0.81910 0.79836 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.72 10.46 55.49 0.58 -27.13 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.34 9.94 -15.06 -0.15 -6.49 16 8 H 0.08 2.07 7.30 -52.48 -0.38 1.69 16 9 N -0.59 -15.57 3.35 -163.30 -0.55 -16.12 16 10 C 0.17 4.52 5.47 -1.69 -0.01 4.51 16 11 C -0.13 -2.98 5.15 -25.20 -0.13 -3.11 16 12 C 0.12 2.30 3.30 -66.83 -0.22 2.08 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 14 C 0.16 3.41 2.58 -68.38 -0.18 3.23 16 15 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 16 C -0.12 -2.00 5.42 -27.24 -0.15 -2.15 16 17 C -0.13 -1.68 5.94 -26.57 -0.16 -1.84 16 18 C 0.10 1.24 5.10 -3.59 -0.02 1.22 16 19 N -0.59 -9.61 2.90 -165.52 -0.48 -10.09 16 20 C 0.57 9.95 7.33 -12.61 -0.09 9.86 16 21 O -0.50 -10.82 13.83 5.25 0.07 -10.75 16 22 C -0.07 -1.04 5.21 -102.63 -0.53 -1.57 16 23 C -0.07 -0.64 7.63 -38.76 -0.30 -0.93 16 24 C -0.15 -0.93 9.91 -40.13 -0.40 -1.33 16 25 C 0.07 0.51 10.88 -16.74 -0.18 0.32 16 26 N -0.37 -3.99 2.94 -61.10 -0.18 -4.17 16 27 C -0.10 -0.94 11.76 -16.41 -0.19 -1.13 16 28 C 0.03 0.37 11.83 -17.88 -0.21 0.16 16 29 N -0.47 -7.87 11.30 -11.32 -0.13 -8.00 16 30 C 0.25 3.74 7.76 -154.14 -1.20 2.54 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 33 H 0.04 1.14 7.81 -51.93 -0.41 0.73 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 2.11 6.09 -51.93 -0.32 1.80 16 36 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.77 5.17 -51.93 -0.27 0.50 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.15 1.05 7.08 -52.49 -0.37 0.68 16 43 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 44 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -37.60 362.11 -10.75 -48.35 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.30 Total: -0.03 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -4.21 Total: 5.08 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.76 Total: -65.51 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.60 -10.75 -48.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049779788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.069 kcal (2) G-P(sol) polarization free energy of solvation -37.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds