Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99483 * 2 1 4 4 H 1.48503 * 109.47340 * 239.99848 * 3 2 1 5 5 H 1.48504 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47096 * 120.00299 * 3 2 1 7 7 C 1.38810 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99305 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.47115 * 125.76472 * 359.97438 * 9 7 2 11 11 C 1.54568 * 107.25523 * 182.59861 * 10 9 7 12 12 C 1.53911 * 102.54822 * 21.70668 * 11 10 9 13 13 H 1.09005 * 110.54730 * 80.60774 * 12 11 10 14 14 C 1.48210 * 125.76857 * 179.97438 * 9 7 2 15 15 H 1.09003 * 111.52463 * 32.96998 * 14 9 7 16 16 C 1.53013 * 107.10883 * 270.86335 * 14 9 7 17 17 C 1.52737 * 110.80316 * 191.93501 * 16 14 9 18 18 C 1.53464 * 108.44128 * 63.76498 * 17 16 14 19 19 N 1.45120 * 111.90048 * 203.54056 * 12 11 10 20 20 C 1.34779 * 119.58113 * 248.67035 * 19 12 11 21 21 O 1.21636 * 119.99707 * 3.82525 * 20 19 12 22 22 C 1.47220 * 119.99838 * 183.82735 * 20 19 12 23 23 C 1.38941 * 120.86486 * 305.64317 * 22 20 19 24 24 C 1.39741 * 119.29465 * 180.28606 * 23 22 20 25 25 C 1.35111 * 121.14361 * 359.44699 * 24 23 22 26 26 N 1.36149 * 121.72136 * 0.26208 * 25 24 23 27 27 C 1.36997 * 132.64579 * 179.97438 * 26 25 24 28 28 C 1.34959 * 107.15290 * 180.02562 * 27 26 25 29 29 N 1.33744 * 108.60398 * 0.02562 * 28 27 26 30 30 C 1.31979 * 109.17191 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00604 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.89031 * 302.00666 * 10 9 7 33 33 H 1.09002 * 109.88577 * 63.18796 * 10 9 7 34 34 H 1.08997 * 110.81277 * 139.90421 * 11 10 9 35 35 H 1.09001 * 110.81199 * 263.23736 * 11 10 9 36 36 H 1.09004 * 109.21381 * 71.59453 * 16 14 9 37 37 H 1.08992 * 109.18016 * 312.25005 * 16 14 9 38 38 H 1.09003 * 109.63994 * 304.08284 * 17 16 14 39 39 H 1.08997 * 109.81670 * 183.55940 * 17 16 14 40 40 H 1.08995 * 109.83352 * 182.39473 * 18 17 16 41 41 H 1.09006 * 109.83173 * 61.43565 * 18 17 16 42 42 H 1.08007 * 120.35385 * 0.03753 * 23 22 20 43 43 H 1.08003 * 119.42756 * 179.73180 * 24 23 22 44 44 H 1.08003 * 119.14144 * 180.27750 * 25 24 23 45 45 H 1.08003 * 126.42317 * 0.03930 * 27 26 25 46 46 H 1.08000 * 125.69805 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1380 -2.5359 0.0005 11 6 -0.4460 -4.0491 0.0675 12 6 0.8526 -4.6290 0.6558 13 1 0.8715 -4.5037 1.7385 14 6 1.9340 -3.7395 0.0005 15 1 2.8739 -3.7550 0.5524 16 6 2.1389 -4.1410 -1.4617 17 6 2.4847 -5.6245 -1.5736 18 6 1.2880 -6.4414 -1.0679 19 7 1.0227 -6.0295 0.3160 20 6 0.9304 -6.9646 1.2823 21 8 0.6372 -6.6395 2.4171 22 6 1.1845 -8.3794 0.9641 23 6 0.4930 -9.0151 -0.0596 24 6 0.7559 -10.3607 -0.3296 25 6 1.6774 -11.0487 0.3798 26 7 2.3845 -10.4679 1.3880 27 6 3.3506 -10.9410 2.2362 28 6 3.7039 -9.9206 3.0458 29 7 2.9820 -8.8442 2.7154 30 6 2.1778 -9.1521 1.7153 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5616 -2.0327 0.8697 33 1 -0.5534 -2.1132 -0.9143 34 1 -1.2899 -4.2437 0.7293 35 1 -0.6361 -4.4500 -0.9281 36 1 2.9512 -3.5504 -1.8854 37 1 1.2233 -3.9432 -2.0190 38 1 3.3615 -5.8433 -0.9641 39 1 2.6888 -5.8789 -2.6137 40 1 1.5267 -7.5044 -1.0981 41 1 0.4143 -6.2398 -1.6877 42 1 -0.2429 -8.4761 -0.6380 43 1 0.2165 -10.8582 -1.1220 44 1 1.8579 -12.0863 0.1408 45 1 3.7541 -11.9427 2.2537 46 1 4.4450 -9.9659 3.8301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049779792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = 105.512606 kcal Electronic energy + Delta-G solvation = -30163.372768 eV Core-core repulsion = 26248.754456 eV Total energy + Delta-G solvation = -3914.618312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94716 -40.35450 -38.06468 -37.36151 -35.26216 -33.76644 -32.37367 -32.12200 -30.55318 -29.34374 -28.83491 -28.06411 -25.55653 -24.28017 -23.94400 -22.94774 -22.24077 -21.89449 -20.56374 -19.94342 -18.40390 -17.85874 -17.66347 -16.85251 -16.51620 -16.21660 -15.88699 -15.64205 -14.79140 -14.72153 -14.38531 -14.21963 -14.04951 -13.83665 -13.68468 -13.39636 -13.05318 -12.72653 -12.55996 -12.30650 -12.21400 -12.00620 -11.86800 -11.38601 -11.18849 -10.95776 -10.90903 -10.75562 -10.59897 -10.42097 -10.25331 -10.07734 -10.06212 -9.63602 -9.57792 -9.54358 -9.09088 -8.58520 -8.28295 -8.12659 -6.82322 -5.67325 -3.01278 0.15475 0.98295 2.16889 2.58306 2.76027 3.05807 3.35404 3.44080 3.48471 3.49452 3.84878 4.04984 4.32404 4.40787 4.52243 4.55342 4.91360 4.96725 5.13605 5.17134 5.20640 5.29950 5.40609 5.43699 5.50142 5.52058 5.61849 5.65151 5.68624 5.72104 5.89583 6.03088 6.05448 6.14019 6.24677 6.35503 6.36728 6.39337 6.53961 6.62355 6.72520 6.77806 7.00979 7.09251 7.56496 7.59379 7.65555 7.70151 7.85904 8.26515 8.33131 9.24415 9.83982 10.50047 11.43904 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.002898 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.594440 B = 9660.440931 C = 9978.705073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.133 3.867 13 H 0.103 0.897 14 C 0.156 3.844 15 H 0.061 0.939 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.098 3.902 19 N -0.583 5.583 20 C 0.564 3.436 21 O -0.515 6.515 22 C -0.072 4.072 23 C -0.070 4.070 24 C -0.149 4.149 25 C 0.073 3.927 26 N -0.370 5.370 27 C -0.099 4.099 28 C 0.031 3.969 29 N -0.472 5.472 30 C 0.250 3.750 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.185 0.815 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -26.538 -4.505 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.029 3.971 13 H 0.121 0.879 14 C 0.047 3.953 15 H 0.079 0.921 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.025 4.025 19 N -0.315 5.315 20 C 0.350 3.650 21 O -0.390 6.390 22 C -0.078 4.078 23 C -0.094 4.094 24 C -0.170 4.170 25 C -0.050 4.050 26 N -0.043 5.043 27 C -0.229 4.229 28 C -0.119 4.119 29 N -0.191 5.191 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.170 0.830 43 H 0.175 0.825 44 H 0.182 0.818 45 H 0.202 0.798 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.387 -25.349 -3.460 25.695 hybrid contribution 0.468 -0.085 -0.514 0.701 sum 2.855 -25.434 -3.975 25.901 Atomic orbital electron populations 1.69942 1.04847 1.25139 1.56989 1.24785 0.95700 0.97577 1.02257 0.86204 0.78443 0.83254 0.77875 1.21248 1.21653 1.21159 1.18992 0.90406 0.82218 1.43817 0.90495 1.44704 1.01492 0.99294 1.86752 1.21174 0.84313 0.87647 1.01246 1.23027 0.96424 0.99847 0.99740 1.21785 0.96620 0.77363 1.01298 0.87919 1.21439 0.94573 0.86074 0.93181 0.92124 1.22116 1.01931 0.93006 0.99858 1.21920 0.97438 0.97200 1.00602 1.22089 0.98780 0.99345 0.82275 1.47514 1.69595 1.06684 1.07685 1.17637 0.78146 0.84070 0.85144 1.90849 1.46644 1.81077 1.20423 1.20171 0.96820 0.94723 0.96059 1.21629 0.98439 0.94646 0.94636 1.20620 0.99617 0.94661 1.02090 1.21615 0.94328 0.99652 0.89409 1.42884 1.26641 1.11484 1.23262 1.22679 0.99197 1.02455 0.98536 1.22664 1.00502 0.88234 1.00477 1.70744 1.08439 1.28141 1.11731 1.21533 0.99601 0.81895 0.96596 0.93712 0.92999 0.94026 0.91939 0.92235 0.92120 0.91800 0.91865 0.91349 0.89915 0.90922 0.83044 0.82550 0.81846 0.79790 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.33 55.49 0.57 -26.57 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.29 10.29 -15.06 -0.16 -6.45 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.15 2.91 -161.97 -0.47 -15.62 16 10 C 0.18 4.41 5.19 -2.88 -0.01 4.40 16 11 C -0.15 -2.93 6.06 -25.43 -0.15 -3.08 16 12 C 0.13 2.60 3.07 -67.36 -0.21 2.39 16 13 H 0.10 2.30 6.99 -51.93 -0.36 1.94 16 14 C 0.16 3.26 3.61 -66.15 -0.24 3.02 16 15 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -2.27 5.10 -26.86 -0.14 -2.41 16 17 C -0.13 -1.78 6.11 -26.63 -0.16 -1.94 16 18 C 0.10 1.20 5.21 -3.64 -0.02 1.18 16 19 N -0.58 -9.42 2.74 -166.42 -0.46 -9.88 16 20 C 0.56 9.79 7.22 -12.61 -0.09 9.69 16 21 O -0.51 -11.15 16.45 5.25 0.09 -11.06 16 22 C -0.07 -0.99 5.00 -102.64 -0.51 -1.50 16 23 C -0.07 -0.63 7.52 -38.76 -0.29 -0.92 16 24 C -0.15 -0.90 9.91 -40.13 -0.40 -1.30 16 25 C 0.07 0.48 10.88 -16.75 -0.18 0.30 16 26 N -0.37 -3.85 2.94 -61.09 -0.18 -4.03 16 27 C -0.10 -0.89 11.76 -16.41 -0.19 -1.08 16 28 C 0.03 0.36 11.83 -17.88 -0.21 0.15 16 29 N -0.47 -7.70 11.30 -11.32 -0.13 -7.83 16 30 C 0.25 3.64 7.82 -154.13 -1.21 2.43 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.05 1.42 7.30 -51.93 -0.38 1.04 16 33 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.03 6.82 -51.93 -0.35 0.68 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.83 4.72 -51.93 -0.25 0.59 16 41 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 42 H 0.15 1.07 7.39 -52.48 -0.39 0.68 16 43 H 0.16 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.16 0.43 8.06 -52.48 -0.42 0.01 16 45 H 0.19 0.86 8.06 -52.48 -0.42 0.43 16 46 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -36.72 364.17 -10.62 -47.34 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.24 Total: 0.26 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -4.27 Total: 4.59 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.66 Total: -63.93 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.72 -10.62 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049779792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.851 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds