Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99664 * 2 1 4 4 H 1.48492 * 109.47471 * 274.98651 * 3 2 1 5 5 H 1.48505 * 109.47408 * 34.99170 * 3 2 1 6 6 H 1.48510 * 109.46834 * 154.98772 * 3 2 1 7 7 C 1.38806 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99911 * 172.58959 * 7 2 1 9 9 N 1.36938 * 119.99880 * 352.58882 * 7 2 1 10 10 C 1.48379 * 126.56098 * 352.77953 * 9 7 2 11 11 C 1.55473 * 106.97500 * 185.54555 * 10 9 7 12 12 C 1.53430 * 101.67156 * 22.59726 * 11 10 9 13 13 H 1.09008 * 111.14105 * 77.98375 * 12 11 10 14 14 C 1.45020 * 126.56045 * 172.80343 * 9 7 2 15 15 H 1.08998 * 108.71002 * 263.47474 * 14 9 7 16 16 C 1.51084 * 119.19723 * 28.76065 * 14 9 7 17 17 C 1.53865 * 107.34453 * 183.88467 * 16 14 9 18 18 C 1.52719 * 111.52606 * 303.06824 * 17 16 14 19 19 N 1.45724 * 116.37700 * 207.26479 * 12 11 10 20 20 C 1.34774 * 122.22514 * 350.13036 * 19 12 11 21 21 O 1.21628 * 120.00248 * 5.40222 * 20 19 12 22 22 C 1.47232 * 119.99922 * 185.40051 * 20 19 12 23 23 C 1.38942 * 120.85912 * 45.14073 * 22 20 19 24 24 C 1.39739 * 119.29282 * 179.74135 * 23 22 20 25 25 C 1.35112 * 121.14479 * 0.57095 * 24 23 22 26 26 N 1.36156 * 121.71790 * 359.69975 * 25 24 23 27 27 C 1.37002 * 132.64554 * 180.02562 * 26 25 24 28 28 C 1.34949 * 107.15403 * 179.97438 * 27 26 25 29 29 N 1.33753 * 108.60598 * 0.02562 * 28 27 26 30 30 C 1.31979 * 109.16818 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99660 * 359.97438 * 1 2 3 32 32 H 1.08992 * 109.96426 * 304.92542 * 10 9 7 33 33 H 1.09009 * 109.96170 * 66.13027 * 10 9 7 34 34 H 1.08997 * 110.99105 * 140.69628 * 11 10 9 35 35 H 1.09004 * 110.98449 * 264.50692 * 11 10 9 36 36 H 1.08997 * 109.87749 * 303.34352 * 16 14 9 37 37 H 1.08994 * 109.88559 * 64.42298 * 16 14 9 38 38 H 1.09007 * 109.07265 * 63.59382 * 17 16 14 39 39 H 1.09005 * 109.07207 * 182.53732 * 17 16 14 40 40 H 1.09001 * 109.15974 * 288.13127 * 18 17 16 41 41 H 1.08995 * 109.11796 * 168.91822 * 18 17 16 42 42 H 1.07994 * 120.35141 * 359.97438 * 23 22 20 43 43 H 1.07998 * 119.43011 * 180.29020 * 24 23 22 44 44 H 1.07997 * 119.14610 * 179.68109 * 25 24 23 45 45 H 1.08003 * 126.42156 * 359.94636 * 27 26 25 46 46 H 1.08004 * 125.70252 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5043 2.6200 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2059 -0.1212 9 7 1.3342 -2.3831 0.1519 10 6 -0.1051 -2.5422 0.4754 11 6 -0.3590 -4.0623 0.6804 12 6 1.0483 -4.5686 1.0229 13 1 1.3068 -4.3416 2.0573 14 6 1.8880 -3.7177 0.0286 15 1 1.6917 -4.0860 -0.9783 16 6 3.3466 -3.9432 0.3519 17 6 3.6638 -5.4155 0.0373 18 6 2.7519 -6.3634 0.8132 19 7 1.3355 -5.9578 0.6896 20 6 0.3740 -6.8156 0.2945 21 8 -0.7600 -6.4158 0.1115 22 6 0.6964 -8.2367 0.0844 23 6 1.4643 -8.9372 1.0064 24 6 1.7460 -10.2866 0.7770 25 6 1.2945 -10.9163 -0.3299 26 7 0.5435 -10.2710 -1.2645 27 6 -0.0211 -10.6786 -2.4443 28 6 -0.6631 -9.6131 -2.9674 29 7 -0.5050 -8.5723 -2.1422 30 6 0.2211 -8.9473 -1.1059 31 1 -0.4849 0.8401 0.0004 32 1 -0.3434 -1.9986 1.3895 33 1 -0.7150 -2.1703 -0.3481 34 1 -1.0480 -4.2351 1.5071 35 1 -0.7275 -4.5236 -0.2359 36 1 3.9674 -3.2908 -0.2620 37 1 3.5275 -3.7424 1.4078 38 1 3.5309 -5.5882 -1.0307 39 1 4.7007 -5.6212 0.3037 40 1 3.0366 -6.3526 1.8653 41 1 2.8703 -7.3735 0.4211 42 1 1.8362 -8.4451 1.8928 43 1 2.3387 -10.8344 1.4945 44 1 1.5358 -11.9586 -0.4773 45 1 0.0371 -11.6673 -2.8752 46 1 -1.2121 -9.6021 -3.8974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049779793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = 112.548291 kcal Electronic energy + Delta-G solvation = -30274.757979 eV Core-core repulsion = 26360.444757 eV Total energy + Delta-G solvation = -3914.313222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.90408 -40.31409 -37.89274 -37.27964 -35.40424 -33.72238 -32.57893 -32.04420 -30.51963 -29.30906 -28.63882 -28.11122 -25.50496 -24.41804 -23.77411 -22.90850 -22.11642 -21.45391 -20.86916 -19.75542 -19.23127 -17.80561 -17.40397 -16.54245 -16.21261 -16.12053 -15.83528 -15.36865 -14.98155 -14.71494 -14.42299 -14.23493 -14.11341 -13.78909 -13.72701 -13.25607 -13.10328 -12.65249 -12.46973 -12.39855 -12.18308 -12.13034 -11.76806 -11.55045 -11.21024 -10.91935 -10.83819 -10.64915 -10.47556 -10.43517 -10.15787 -10.06745 -9.90104 -9.78509 -9.53215 -9.10030 -8.97907 -8.50697 -8.20571 -8.10459 -6.73681 -5.64307 -2.98533 0.15927 1.01379 2.21676 2.60628 2.83468 3.08104 3.44132 3.44464 3.49140 3.51515 3.89194 4.06423 4.33622 4.43098 4.54704 4.57387 4.85845 4.92897 5.11370 5.17369 5.23691 5.28521 5.40912 5.44263 5.47272 5.51790 5.64740 5.67166 5.69091 5.81228 5.92272 6.03540 6.07319 6.14374 6.30243 6.34788 6.40957 6.45194 6.61456 6.75082 6.77399 6.84731 6.98970 7.26976 7.60436 7.67205 7.75793 7.78573 7.90554 8.31706 8.42725 9.24977 9.89797 10.59155 11.48135 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.003039 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.083748 B = 9211.002890 C = 9744.085494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.172 3.828 11 C -0.134 4.134 12 C 0.117 3.883 13 H 0.082 0.918 14 C 0.158 3.842 15 H 0.019 0.981 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.105 3.895 19 N -0.592 5.592 20 C 0.568 3.432 21 O -0.500 6.500 22 C -0.074 4.074 23 C -0.070 4.070 24 C -0.151 4.151 25 C 0.074 3.926 26 N -0.371 5.371 27 C -0.100 4.100 28 C 0.031 3.969 29 N -0.467 5.467 30 C 0.251 3.749 31 H 0.252 0.748 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.185 0.815 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -26.507 1.870 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.013 3.987 13 H 0.100 0.900 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.326 5.326 20 C 0.354 3.646 21 O -0.375 6.375 22 C -0.080 4.080 23 C -0.094 4.094 24 C -0.172 4.172 25 C -0.049 4.049 26 N -0.044 5.044 27 C -0.230 4.230 28 C -0.119 4.119 29 N -0.185 5.185 30 C 0.004 3.996 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.181 0.819 45 H 0.202 0.798 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.776 -25.315 1.548 26.011 hybrid contribution 0.873 -0.122 0.046 0.882 sum 6.649 -25.437 1.595 26.340 Atomic orbital electron populations 1.69969 1.04909 1.25020 1.56407 1.24811 0.95599 0.97639 1.02316 0.86162 0.78647 0.83857 0.77443 1.21718 1.21708 1.20694 1.18968 0.90777 0.82482 1.43321 0.90446 1.44046 1.05867 0.99276 1.82389 1.21710 0.84801 0.88867 0.99862 1.23056 0.93591 0.97860 1.02776 1.22429 0.99504 0.77936 0.98825 0.90013 1.20742 0.91592 0.87222 0.95550 0.96410 1.21417 0.98169 0.94082 1.01679 1.21902 0.98482 0.95789 1.00658 1.21910 0.80574 0.98742 1.00567 1.47832 1.07036 1.11269 1.66440 1.17515 0.85196 0.83923 0.77946 1.90853 1.20685 1.76811 1.49101 1.20326 0.99975 0.95158 0.92548 1.21663 0.94809 0.94086 0.98820 1.20614 1.03665 0.95196 0.97747 1.21613 0.94800 0.98931 0.89542 1.42912 1.34173 1.11224 1.16118 1.22671 1.08337 1.02709 0.89244 1.22687 1.00754 0.88178 1.00277 1.70786 1.16737 1.28894 1.02118 1.21581 0.99957 0.81296 0.96775 0.93766 0.94421 0.92706 0.92223 0.89140 0.91415 0.91766 0.91844 0.90883 0.91312 0.90247 0.83145 0.82651 0.81909 0.79831 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 10.66 55.49 0.59 -27.16 16 2 C -0.01 -0.20 5.45 -17.43 -0.10 -0.29 16 3 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.38 9.95 -15.06 -0.15 -6.53 16 8 H 0.08 2.08 7.29 -52.48 -0.38 1.69 16 9 N -0.59 -15.53 3.35 -163.28 -0.55 -16.08 16 10 C 0.17 4.48 5.47 -1.69 -0.01 4.47 16 11 C -0.13 -2.98 5.11 -25.19 -0.13 -3.11 16 12 C 0.12 2.27 3.33 -66.80 -0.22 2.04 16 13 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 14 C 0.16 3.41 2.58 -68.36 -0.18 3.23 16 15 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 16 C -0.11 -1.98 5.42 -27.24 -0.15 -2.13 16 17 C -0.13 -1.68 5.92 -26.42 -0.16 -1.84 16 18 C 0.10 1.24 5.14 -3.45 -0.02 1.22 16 19 N -0.59 -9.58 2.91 -165.32 -0.48 -10.06 16 20 C 0.57 9.95 7.32 -12.61 -0.09 9.86 16 21 O -0.50 -10.80 13.76 5.25 0.07 -10.73 16 22 C -0.07 -1.03 5.18 -102.64 -0.53 -1.57 16 23 C -0.07 -0.63 7.64 -38.76 -0.30 -0.93 16 24 C -0.15 -0.93 9.91 -40.13 -0.40 -1.33 16 25 C 0.07 0.51 10.88 -16.74 -0.18 0.32 16 26 N -0.37 -3.99 2.94 -61.10 -0.18 -4.17 16 27 C -0.10 -0.94 11.76 -16.41 -0.19 -1.13 16 28 C 0.03 0.38 11.83 -17.88 -0.21 0.17 16 29 N -0.47 -7.90 11.30 -11.32 -0.13 -8.02 16 30 C 0.25 3.74 7.76 -154.13 -1.20 2.55 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.04 1.04 7.81 -51.93 -0.41 0.63 16 33 H 0.05 1.59 7.32 -51.92 -0.38 1.21 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 2.18 6.03 -51.93 -0.31 1.87 16 36 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.78 5.20 -51.93 -0.27 0.51 16 42 H 0.15 1.05 7.13 -52.49 -0.37 0.67 16 43 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -37.74 362.35 -10.75 -48.49 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.31 Total: -0.11 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -4.20 Total: 5.00 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.74 Total: -65.49 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.74 -10.75 -48.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049779793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.034 kcal (2) G-P(sol) polarization free energy of solvation -37.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds