Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47167 * 274.98399 * 3 2 1 5 5 H 1.48498 * 109.47046 * 34.98254 * 3 2 1 6 6 H 1.48500 * 109.47330 * 154.98170 * 3 2 1 7 7 C 1.38819 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99575 * 173.18001 * 7 2 1 9 9 N 1.36936 * 120.00279 * 353.18435 * 7 2 1 10 10 C 1.48381 * 126.55841 * 355.54942 * 9 7 2 11 11 C 1.55476 * 106.97434 * 174.51129 * 10 9 7 12 12 C 1.53441 * 101.66738 * 337.39622 * 11 10 9 13 13 H 1.08999 * 111.14354 * 282.01663 * 12 11 10 14 14 C 1.45018 * 126.56153 * 175.58303 * 9 7 2 15 15 H 1.09002 * 108.69923 * 96.47288 * 14 9 7 16 16 C 1.51079 * 119.20016 * 331.19541 * 14 9 7 17 17 C 1.53863 * 107.34826 * 176.11130 * 16 14 9 18 18 C 1.52717 * 111.52644 * 56.92654 * 17 16 14 19 19 N 1.45612 * 116.38790 * 152.71040 * 12 11 10 20 20 C 1.34781 * 122.16386 * 9.93505 * 19 12 11 21 21 O 1.21584 * 119.99589 * 5.34685 * 20 19 12 22 22 C 1.47527 * 119.99956 * 185.35055 * 20 19 12 23 23 C 1.39437 * 120.25387 * 33.58192 * 22 20 19 24 24 C 1.38278 * 120.28589 * 179.82332 * 23 22 20 25 25 C 1.37883 * 120.72479 * 0.44525 * 24 23 22 26 26 C 1.39673 * 120.10899 * 359.77645 * 25 24 23 27 27 N 1.35852 * 133.51585 * 179.97438 * 26 25 24 28 28 C 1.30094 * 109.54121 * 180.02562 * 27 26 25 29 29 N 1.36127 * 110.04418 * 0.02562 * 28 27 26 30 30 H 0.96997 * 126.30493 * 180.02562 * 29 28 27 31 31 C 1.37508 * 107.38349 * 359.97438 * 29 28 27 32 32 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.96258 * 293.88424 * 10 9 7 34 34 H 1.08993 * 109.96722 * 55.09566 * 10 9 7 35 35 H 1.08997 * 110.98850 * 95.49203 * 11 10 9 36 36 H 1.08995 * 110.98979 * 219.26593 * 11 10 9 37 37 H 1.09004 * 109.88507 * 56.64562 * 16 14 9 38 38 H 1.09003 * 109.87526 * 295.56885 * 16 14 9 39 39 H 1.08999 * 109.06923 * 296.40401 * 17 16 14 40 40 H 1.09003 * 109.01951 * 177.41609 * 17 16 14 41 41 H 1.09005 * 109.16063 * 71.86448 * 18 17 16 42 42 H 1.08998 * 109.16505 * 191.11309 * 18 17 16 43 43 H 1.08007 * 119.85256 * 0.02562 * 23 22 20 44 44 H 1.08004 * 119.63762 * 180.24287 * 24 23 22 45 45 H 1.08000 * 119.94534 * 179.79913 * 25 24 23 46 46 H 1.07993 * 124.97256 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0845 -1.2056 -0.1105 9 7 1.3328 -2.3839 0.1418 10 6 -0.1204 -2.5447 0.3951 11 6 -0.4257 -4.0681 0.3351 12 6 0.7472 -4.5867 -0.5073 13 1 0.5907 -4.3833 -1.5666 14 6 1.8984 -3.7175 0.0732 15 1 2.1027 -4.0630 1.0866 16 6 3.1246 -3.9552 -0.7768 17 6 3.5452 -5.4214 -0.5755 18 6 2.4110 -6.3827 -0.9245 19 7 1.1471 -5.9681 -0.2789 20 6 0.4121 -6.8132 0.4709 21 8 -0.6688 -6.4604 0.9017 22 6 0.9191 -8.1661 0.7690 23 6 2.2865 -8.3834 0.9339 24 6 2.7622 -9.6506 1.2168 25 6 1.8973 -10.7184 1.3314 26 6 0.5235 -10.5281 1.1661 27 7 -0.5489 -11.3605 1.2172 28 6 -1.6363 -10.6838 0.9893 29 7 -1.3344 -9.3736 0.7765 30 1 -1.9659 -8.6624 0.5858 31 6 0.0304 -9.2439 0.8827 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3719 -2.1534 1.3809 34 1 -0.6919 -2.0199 -0.3703 35 1 -0.4147 -4.5080 1.3323 36 1 -1.3773 -4.2563 -0.1619 37 1 3.9295 -3.2918 -0.4602 38 1 2.8882 -3.7781 -1.8261 39 1 3.8303 -5.5703 0.4660 40 1 4.4027 -5.6358 -1.2134 41 1 2.2730 -6.3957 -2.0056 42 1 2.6741 -7.3847 -0.5854 43 1 2.9769 -7.5577 0.8434 44 1 3.8231 -9.8063 1.3464 45 1 2.2828 -11.7033 1.5495 46 1 -2.6324 -11.1006 0.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049805622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 93.713258 kcal Electronic energy + Delta-G solvation = -30289.673701 eV Core-core repulsion = 26374.543730 eV Total energy + Delta-G solvation = -3915.129971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39155 -40.46511 -38.00227 -37.24394 -35.46394 -33.33909 -32.67988 -32.23435 -30.45396 -29.76096 -28.85772 -28.16466 -25.29478 -24.50495 -23.48208 -22.75276 -22.00684 -21.52918 -20.91650 -19.78413 -19.12868 -18.05203 -17.50118 -16.80806 -16.25672 -15.80602 -15.57953 -15.36010 -15.16811 -14.72164 -14.50494 -14.28178 -14.02049 -13.76772 -13.69955 -13.44318 -13.11957 -12.50817 -12.43928 -12.19683 -12.07755 -11.95106 -11.83873 -11.50754 -11.12520 -10.96031 -10.83578 -10.70936 -10.57679 -10.50205 -10.29920 -10.13527 -10.03903 -9.87207 -9.66173 -9.15058 -8.66591 -8.65134 -8.43983 -8.22292 -6.85215 -5.70683 -3.08171 0.42667 1.24995 2.33933 2.76229 2.97976 3.07887 3.38302 3.44011 3.46023 3.64729 3.99208 4.30104 4.47473 4.62274 4.70408 4.82265 4.98103 5.03078 5.07113 5.13468 5.27807 5.31537 5.42345 5.44931 5.53516 5.62078 5.71688 5.73391 5.82188 5.94634 6.01980 6.06405 6.12649 6.18793 6.22099 6.25242 6.34925 6.50424 6.53019 6.67931 6.73912 6.83436 7.11011 7.11902 7.48295 7.57899 7.60735 7.65530 7.81510 8.23324 8.27525 9.15985 9.80684 10.48429 11.38455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.003002 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.728342 B = 9325.226610 C =10239.994060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.165 3.835 11 C -0.125 4.125 12 C 0.114 3.886 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.082 3.918 19 N -0.588 5.588 20 C 0.560 3.440 21 O -0.538 6.538 22 C -0.119 4.119 23 C -0.078 4.078 24 C -0.137 4.137 25 C -0.043 4.043 26 C 0.036 3.964 27 N -0.497 5.497 28 C 0.262 3.738 29 N -0.589 5.589 30 H 0.432 0.568 31 C 0.096 3.904 32 H 0.252 0.748 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -21.474 -1.168 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.040 3.960 11 C -0.164 4.164 12 C 0.010 3.990 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.040 4.040 19 N -0.319 5.319 20 C 0.348 3.652 21 O -0.416 6.416 22 C -0.125 4.125 23 C -0.097 4.097 24 C -0.157 4.157 25 C -0.063 4.063 26 C -0.082 4.082 27 N -0.217 5.217 28 C -0.025 4.025 29 N -0.199 5.199 30 H 0.273 0.727 31 C -0.018 4.018 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.167 0.833 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.575 -21.929 -0.760 22.093 hybrid contribution -0.004 2.138 -0.297 2.159 sum 2.571 -19.791 -1.058 19.985 Atomic orbital electron populations 1.69928 1.04947 1.25044 1.56577 1.24815 0.95630 0.97700 1.02223 0.86133 0.78696 0.83678 0.77448 1.21669 1.21659 1.20652 1.18987 0.90734 0.82387 1.43379 0.90347 1.44099 1.04509 0.99302 1.83575 1.21857 0.84602 0.89070 1.00473 1.22882 0.95829 0.97718 0.99952 1.22450 0.98648 0.78274 0.99612 0.90080 1.20784 0.91502 0.87061 0.95683 0.96528 1.21424 0.99083 0.94102 1.00769 1.21917 0.97145 0.95778 1.02082 1.22408 0.83793 0.99866 0.97979 1.47847 1.22934 1.11914 1.49189 1.18114 0.84408 0.84015 0.78642 1.90765 1.21309 1.76664 1.52892 1.18952 0.92859 0.91808 1.08860 1.21492 0.93182 0.98256 0.96789 1.20864 1.00088 0.91874 1.02882 1.20430 0.89200 0.99658 0.96966 1.19049 0.94183 0.88770 1.06243 1.70515 0.96948 1.32047 1.22153 1.25442 1.00001 0.79681 0.97424 1.43221 1.06651 1.11309 1.58731 0.72706 1.18579 0.84038 0.95966 1.03187 0.93733 0.95234 0.91105 0.90589 0.92015 0.91335 0.91689 0.91735 0.90616 0.91478 0.87996 0.83344 0.84508 0.84912 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.54 55.49 0.58 -26.30 16 2 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 3 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.17 9.91 -15.06 -0.15 -6.32 16 8 H 0.08 2.04 7.37 -52.49 -0.39 1.66 16 9 N -0.59 -14.90 3.35 -163.28 -0.55 -15.45 16 10 C 0.16 4.10 5.59 -1.69 -0.01 4.09 16 11 C -0.13 -2.61 4.93 -25.19 -0.12 -2.74 16 12 C 0.11 2.13 3.32 -66.86 -0.22 1.91 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.23 2.58 -68.37 -0.18 3.06 16 15 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 16 C -0.12 -1.89 5.47 -27.25 -0.15 -2.04 16 17 C -0.13 -1.53 5.75 -26.43 -0.15 -1.68 16 18 C 0.08 0.94 5.48 -3.44 -0.02 0.92 16 19 N -0.59 -9.00 2.91 -165.28 -0.48 -9.48 16 20 C 0.56 8.87 7.33 -12.47 -0.09 8.78 16 21 O -0.54 -9.89 13.18 5.29 0.07 -9.82 16 22 C -0.12 -1.57 5.50 -104.94 -0.58 -2.14 16 23 C -0.08 -0.81 7.48 -39.12 -0.29 -1.10 16 24 C -0.14 -1.19 9.99 -39.70 -0.40 -1.59 16 25 C -0.04 -0.43 10.09 -39.18 -0.40 -0.83 16 26 C 0.04 0.44 7.22 -84.72 -0.61 -0.17 16 27 N -0.50 -6.01 11.28 -12.05 -0.14 -6.14 16 28 C 0.26 2.41 12.97 -89.71 -1.16 1.25 16 29 N -0.59 -6.41 6.09 -11.56 -0.07 -6.48 16 30 H 0.43 4.35 8.40 -40.82 -0.34 4.01 16 31 C 0.10 1.24 6.88 -83.77 -0.58 0.67 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.07 1.94 6.76 -51.93 -0.35 1.59 16 35 H 0.08 1.66 6.38 -51.93 -0.33 1.33 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.18 7.72 -51.93 -0.40 0.77 16 38 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.96 3.61 -51.93 -0.19 0.78 16 43 H 0.15 1.37 5.14 -52.48 -0.27 1.10 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -34.20 356.53 -11.45 -45.65 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.02 Total: 4.01 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -5.20 Total: 1.78 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.65 Total: -63.86 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.20 -11.45 -45.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049805622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.366 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds