Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99542 * 2 1 4 4 H 1.48497 * 109.47008 * 269.99754 * 3 2 1 5 5 H 1.48498 * 109.47032 * 29.99864 * 3 2 1 6 6 H 1.48492 * 109.47089 * 150.00121 * 3 2 1 7 7 C 1.38805 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.48381 * 126.56105 * 0.04408 * 9 7 2 11 11 C 1.55470 * 106.97595 * 185.48874 * 10 9 7 12 12 C 1.53341 * 101.58367 * 22.38393 * 11 10 9 13 13 H 1.09003 * 111.34584 * 78.22387 * 12 11 10 14 14 C 1.45023 * 126.56207 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70203 * 263.52881 * 14 9 7 16 16 C 1.51077 * 119.19848 * 28.80978 * 14 9 7 17 17 C 1.53871 * 107.34526 * 183.88792 * 16 14 9 18 18 C 1.52715 * 111.52375 * 303.06753 * 17 16 14 19 19 N 1.45720 * 116.43387 * 206.93144 * 12 11 10 20 20 C 1.34781 * 122.22336 * 350.63069 * 19 12 11 21 21 O 1.21590 * 120.00201 * 5.05772 * 20 19 12 22 22 C 1.47527 * 119.99406 * 185.06356 * 20 19 12 23 23 C 1.39434 * 120.25591 * 45.73633 * 22 20 19 24 24 C 1.38276 * 120.28973 * 180.02562 * 23 22 20 25 25 C 1.37892 * 120.72607 * 0.02562 * 24 23 22 26 26 C 1.39680 * 120.10134 * 0.02562 * 25 24 23 27 27 N 1.35856 * 133.50609 * 180.02562 * 26 25 24 28 28 C 1.30092 * 109.53351 * 179.69986 * 27 26 25 29 29 N 1.36125 * 110.04928 * 0.41621 * 28 27 26 30 30 H 0.96997 * 126.30678 * 179.84932 * 29 28 27 31 31 C 1.37509 * 107.38257 * 359.58592 * 29 28 27 32 32 H 0.97002 * 120.00659 * 0.02562 * 1 2 3 33 33 H 1.09006 * 109.95938 * 304.86898 * 10 9 7 34 34 H 1.08997 * 109.95937 * 66.10501 * 10 9 7 35 35 H 1.09000 * 110.98588 * 140.69610 * 11 10 9 36 36 H 1.08996 * 110.98979 * 264.46646 * 11 10 9 37 37 H 1.09000 * 109.88173 * 64.42736 * 16 14 9 38 38 H 1.09003 * 109.94569 * 303.38388 * 16 14 9 39 39 H 1.09002 * 109.06811 * 182.54796 * 17 16 14 40 40 H 1.09000 * 109.01596 * 63.56379 * 17 16 14 41 41 H 1.08999 * 109.16512 * 288.13678 * 18 17 16 42 42 H 1.08995 * 109.16332 * 168.94634 * 18 17 16 43 43 H 1.07998 * 119.85388 * 0.04333 * 23 22 20 44 44 H 1.07997 * 119.64170 * 180.02562 * 24 23 22 45 45 H 1.07991 * 119.94945 * 179.97438 * 25 24 23 46 46 H 1.07996 * 124.97327 * 180.23970 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 -0.0009 11 6 -0.4301 -4.0800 0.1415 12 6 0.8735 -4.5762 0.7783 13 1 0.9028 -4.3558 1.8454 14 6 1.9026 -3.7185 -0.0005 15 1 1.9349 -4.0855 -1.0264 16 6 3.2560 -3.9350 0.6350 17 6 3.6452 -5.4044 0.3962 18 6 2.5919 -6.3604 0.9519 19 7 1.2346 -5.9641 0.5198 20 6 0.3892 -6.8273 -0.0774 21 8 -0.6802 -6.4350 -0.5027 22 6 0.7614 -8.2482 -0.2147 23 6 1.3042 -8.9401 0.8673 24 6 1.6538 -10.2718 0.7392 25 6 1.4730 -10.9358 -0.4557 26 6 0.9321 -10.2651 -1.5551 27 7 0.6413 -10.6389 -2.8284 28 6 0.1367 -9.6284 -3.4739 29 7 0.0786 -8.5377 -2.6615 30 1 -0.2546 -7.6592 -2.9025 31 6 0.5738 -8.9124 -1.4346 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5853 -2.0182 0.8395 34 1 -0.5652 -2.1881 -0.9378 35 1 -1.2825 -4.2596 0.7967 36 1 -0.5860 -4.5411 -0.8338 37 1 3.1991 -3.7358 1.7051 38 1 3.9927 -3.2768 0.1743 39 1 4.5995 -5.6037 0.8837 40 1 3.7506 -5.5743 -0.6753 41 1 2.6384 -6.3503 2.0409 42 1 2.8004 -7.3690 0.5952 43 1 1.4520 -8.4337 1.8097 44 1 2.0731 -10.7976 1.5842 45 1 1.7508 -11.9758 -0.5420 46 1 -0.1860 -9.6508 -4.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049805629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = 82.822717 kcal Electronic energy + Delta-G solvation = -30321.159611 eV Core-core repulsion = 26405.557392 eV Total energy + Delta-G solvation = -3915.602220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.37367 -40.41740 -38.04590 -37.14142 -35.44848 -33.33860 -32.68613 -32.23075 -30.44364 -29.66940 -28.82791 -28.21600 -25.26749 -24.50967 -23.52133 -22.67418 -22.03285 -21.50404 -20.89653 -19.76829 -19.28725 -17.96735 -17.44520 -16.73996 -16.19848 -15.76699 -15.65379 -15.33241 -15.04461 -14.83696 -14.43708 -14.24153 -14.16353 -13.87388 -13.73197 -13.31826 -13.00981 -12.52592 -12.35573 -12.25366 -12.18016 -12.03800 -11.80643 -11.58751 -11.15524 -10.93740 -10.88958 -10.73555 -10.60759 -10.52685 -10.32744 -10.13139 -10.04622 -9.89996 -9.64748 -9.09927 -8.66890 -8.61426 -8.39772 -8.27752 -6.86338 -5.72847 -3.07430 0.47283 1.25769 2.37439 2.75155 2.87868 3.08905 3.38191 3.43018 3.45111 3.62658 4.00310 4.29775 4.46895 4.61715 4.71254 4.84513 4.99283 5.04511 5.08269 5.15377 5.27900 5.32522 5.40202 5.46903 5.54677 5.60082 5.72855 5.73903 5.82102 5.95466 6.00183 6.07011 6.13831 6.18540 6.22237 6.25174 6.35659 6.50309 6.53319 6.67573 6.72652 6.84561 7.10288 7.12441 7.53747 7.58368 7.59079 7.63530 7.80712 8.21638 8.26729 9.16435 9.80300 10.48155 11.39121 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.003052 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.143230 B = 9173.205507 C = 9678.297032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.133 4.133 12 C 0.115 3.885 13 H 0.081 0.919 14 C 0.161 3.839 15 H 0.014 0.986 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.103 3.897 19 N -0.589 5.589 20 C 0.559 3.441 21 O -0.533 6.533 22 C -0.115 4.115 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.045 4.045 26 C 0.038 3.962 27 N -0.497 5.497 28 C 0.264 3.736 29 N -0.590 5.590 30 H 0.431 0.569 31 C 0.092 3.908 32 H 0.253 0.747 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -20.856 0.073 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.171 4.171 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.051 3.949 15 H 0.032 0.968 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.321 5.321 20 C 0.347 3.653 21 O -0.411 6.411 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.156 4.156 25 C -0.065 4.065 26 C -0.080 4.080 27 N -0.217 5.217 28 C -0.023 4.023 29 N -0.201 5.201 30 H 0.272 0.728 31 C -0.021 4.021 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.882 -21.245 -0.467 21.602 hybrid contribution 0.155 2.191 0.125 2.200 sum 4.037 -19.055 -0.342 19.481 Atomic orbital electron populations 1.69943 1.04894 1.25097 1.56734 1.24805 0.95673 0.97641 1.02195 0.86146 0.78585 0.83621 0.77560 1.21643 1.21672 1.20687 1.18985 0.90337 0.82191 1.44048 0.90348 1.44080 1.01770 0.99297 1.86513 1.21741 0.83641 0.88723 1.01098 1.23007 0.94454 0.98017 1.01624 1.22365 0.98882 0.78221 0.99458 0.90074 1.20624 0.91452 0.87200 0.95607 0.96836 1.21434 0.98480 0.94202 1.01330 1.21903 0.97720 0.95635 1.01526 1.21950 0.81390 0.99073 0.99508 1.47924 1.14312 1.11244 1.58580 1.18192 0.84104 0.84851 0.78110 1.90785 1.23388 1.78045 1.48858 1.18927 1.06418 0.94343 0.92464 1.21164 0.95823 0.94598 0.97357 1.20823 1.02873 0.94294 0.97593 1.20413 0.96331 0.99754 0.90006 1.19045 1.04846 0.90870 0.93261 1.70523 1.18822 1.28317 1.04013 1.25447 0.97595 0.81162 0.98098 1.43211 1.52612 1.14625 1.09615 0.72847 1.18585 1.01035 0.95485 0.87030 0.93702 0.92536 0.94303 0.92134 0.89744 0.91671 0.91421 0.90725 0.91981 0.91274 0.89623 0.84550 0.84615 0.84950 0.76512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.46 55.49 0.58 -26.40 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.20 9.94 -15.06 -0.15 -6.35 16 8 H 0.08 2.05 7.31 -52.48 -0.38 1.66 16 9 N -0.59 -14.94 3.35 -163.62 -0.55 -15.49 16 10 C 0.17 4.29 5.47 -1.69 -0.01 4.28 16 11 C -0.13 -2.75 5.12 -25.24 -0.13 -2.88 16 12 C 0.11 2.12 3.28 -67.14 -0.22 1.90 16 13 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 14 C 0.16 3.28 2.57 -68.66 -0.18 3.10 16 15 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 16 C -0.12 -1.93 5.45 -27.24 -0.15 -2.08 16 17 C -0.13 -1.61 5.92 -26.42 -0.16 -1.76 16 18 C 0.10 1.20 5.13 -3.45 -0.02 1.18 16 19 N -0.59 -8.93 2.92 -165.60 -0.48 -9.41 16 20 C 0.56 8.78 7.27 -12.47 -0.09 8.69 16 21 O -0.53 -9.91 13.73 5.29 0.07 -9.83 16 22 C -0.12 -1.50 5.00 -104.94 -0.52 -2.03 16 23 C -0.07 -0.70 7.53 -39.12 -0.29 -0.99 16 24 C -0.14 -1.15 9.99 -39.69 -0.40 -1.54 16 25 C -0.05 -0.45 10.09 -39.17 -0.40 -0.85 16 26 C 0.04 0.47 7.22 -84.71 -0.61 -0.14 16 27 N -0.50 -6.10 11.28 -12.04 -0.14 -6.23 16 28 C 0.26 2.52 12.97 -89.72 -1.16 1.36 16 29 N -0.59 -6.63 6.21 -11.56 -0.07 -6.70 16 30 H 0.43 4.55 8.96 -40.82 -0.37 4.19 16 31 C 0.09 1.20 6.95 -83.76 -0.58 0.62 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 34 H 0.04 1.06 7.81 -51.93 -0.41 0.66 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.82 6.03 -51.93 -0.31 1.50 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.85 5.21 -51.93 -0.27 0.58 16 43 H 0.14 1.14 7.13 -52.49 -0.37 0.76 16 44 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.22 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -34.23 360.90 -11.58 -45.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.24 Total: 3.72 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -5.16 Total: 2.23 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.66 Total: -64.24 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.23 -11.58 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049805629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.633 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds