Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99542 * 2 1 4 4 H 1.48497 * 109.47008 * 269.99754 * 3 2 1 5 5 H 1.48498 * 109.47032 * 29.99864 * 3 2 1 6 6 H 1.48492 * 109.47089 * 150.00121 * 3 2 1 7 7 C 1.38805 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.48381 * 126.56105 * 0.04408 * 9 7 2 11 11 C 1.55470 * 106.97595 * 185.48874 * 10 9 7 12 12 C 1.53341 * 101.58367 * 22.38393 * 11 10 9 13 13 H 1.09003 * 111.34584 * 78.22387 * 12 11 10 14 14 C 1.45023 * 126.56207 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70203 * 263.52881 * 14 9 7 16 16 C 1.51077 * 119.19848 * 28.80978 * 14 9 7 17 17 C 1.53871 * 107.34526 * 183.88792 * 16 14 9 18 18 C 1.52715 * 111.52375 * 303.06753 * 17 16 14 19 19 N 1.45720 * 116.43387 * 206.93144 * 12 11 10 20 20 C 1.34781 * 122.22336 * 350.63069 * 19 12 11 21 21 O 1.21590 * 120.00201 * 5.05772 * 20 19 12 22 22 C 1.47527 * 119.99406 * 185.06356 * 20 19 12 23 23 C 1.39434 * 120.25591 * 45.73633 * 22 20 19 24 24 C 1.38276 * 120.28973 * 180.02562 * 23 22 20 25 25 C 1.37892 * 120.72607 * 0.02562 * 24 23 22 26 26 C 1.39680 * 120.10134 * 0.02562 * 25 24 23 27 27 N 1.35856 * 133.50609 * 180.02562 * 26 25 24 28 28 C 1.30092 * 109.53351 * 179.69986 * 27 26 25 29 29 N 1.36125 * 110.04928 * 0.41621 * 28 27 26 30 30 H 0.96997 * 126.30678 * 179.84932 * 29 28 27 31 31 C 1.37509 * 107.38257 * 359.58592 * 29 28 27 32 32 H 0.97002 * 120.00659 * 0.02562 * 1 2 3 33 33 H 1.09006 * 109.95938 * 304.86898 * 10 9 7 34 34 H 1.08997 * 109.95937 * 66.10501 * 10 9 7 35 35 H 1.09000 * 110.98588 * 140.69610 * 11 10 9 36 36 H 1.08996 * 110.98979 * 264.46646 * 11 10 9 37 37 H 1.09000 * 109.88173 * 64.42736 * 16 14 9 38 38 H 1.09003 * 109.94569 * 303.38388 * 16 14 9 39 39 H 1.09002 * 109.06811 * 182.54796 * 17 16 14 40 40 H 1.09000 * 109.01596 * 63.56379 * 17 16 14 41 41 H 1.08999 * 109.16512 * 288.13678 * 18 17 16 42 42 H 1.08995 * 109.16332 * 168.94634 * 18 17 16 43 43 H 1.07998 * 119.85388 * 0.04333 * 23 22 20 44 44 H 1.07997 * 119.64170 * 180.02562 * 24 23 22 45 45 H 1.07991 * 119.94945 * 179.97438 * 25 24 23 46 46 H 1.07996 * 124.97327 * 180.23970 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 -0.0009 11 6 -0.4301 -4.0800 0.1415 12 6 0.8735 -4.5762 0.7783 13 1 0.9028 -4.3558 1.8454 14 6 1.9026 -3.7185 -0.0005 15 1 1.9349 -4.0855 -1.0264 16 6 3.2560 -3.9350 0.6350 17 6 3.6452 -5.4044 0.3962 18 6 2.5919 -6.3604 0.9519 19 7 1.2346 -5.9641 0.5198 20 6 0.3892 -6.8273 -0.0774 21 8 -0.6802 -6.4350 -0.5027 22 6 0.7614 -8.2482 -0.2147 23 6 1.3042 -8.9401 0.8673 24 6 1.6538 -10.2718 0.7392 25 6 1.4730 -10.9358 -0.4557 26 6 0.9321 -10.2651 -1.5551 27 7 0.6413 -10.6389 -2.8284 28 6 0.1367 -9.6284 -3.4739 29 7 0.0786 -8.5377 -2.6615 30 1 -0.2546 -7.6592 -2.9025 31 6 0.5738 -8.9124 -1.4346 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5853 -2.0182 0.8395 34 1 -0.5652 -2.1881 -0.9378 35 1 -1.2825 -4.2596 0.7967 36 1 -0.5860 -4.5411 -0.8338 37 1 3.1991 -3.7358 1.7051 38 1 3.9927 -3.2768 0.1743 39 1 4.5995 -5.6037 0.8837 40 1 3.7506 -5.5743 -0.6753 41 1 2.6384 -6.3503 2.0409 42 1 2.8004 -7.3690 0.5952 43 1 1.4520 -8.4337 1.8097 44 1 2.0731 -10.7976 1.5842 45 1 1.7508 -11.9758 -0.5420 46 1 -0.1860 -9.6508 -4.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049805629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = 61.406269 kcal Electronic energy + Delta-G solvation = -30322.088298 eV Core-core repulsion = 26405.557392 eV Total energy + Delta-G solvation = -3916.530907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.18476 -41.72507 -39.41136 -38.04721 -36.92335 -34.44403 -34.06774 -33.83313 -31.57387 -30.55794 -30.37841 -29.64742 -26.62662 -26.30012 -24.51924 -23.55289 -23.01091 -22.75518 -22.35619 -21.43958 -20.46139 -18.82917 -18.72171 -18.16115 -17.23938 -17.15308 -16.85597 -16.54222 -16.22671 -16.10561 -15.82311 -15.50247 -15.41934 -15.10866 -14.84975 -14.56881 -14.28430 -14.14644 -13.91699 -13.47504 -13.20770 -13.06870 -12.93520 -12.86437 -12.74139 -12.72224 -12.29580 -12.10065 -11.99010 -11.82521 -11.76106 -11.71437 -11.57904 -11.46549 -11.28243 -10.79245 -10.39753 -9.65619 -9.43538 -9.17398 -8.93890 -7.86213 -5.23464 -0.33465 0.47853 1.44214 1.45265 1.47011 1.55584 1.78210 1.99840 2.01872 2.48736 2.81290 3.20512 3.32450 3.34248 3.49449 3.79832 3.91511 3.96800 4.01719 4.03751 4.05512 4.23001 4.29377 4.31066 4.37397 4.43215 4.53023 4.55767 4.62906 4.76875 4.79423 4.88880 4.95316 5.00971 5.06301 5.11685 5.25436 5.28340 5.39711 5.40101 5.45823 5.46475 5.56379 5.58033 5.69951 5.82717 6.15489 6.31056 6.42702 6.79987 7.03113 7.06372 7.73181 8.42845 9.25470 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.003052 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.143230 B = 9173.205507 C = 9678.297032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.611 5.611 10 C 0.183 3.817 11 C -0.116 4.116 12 C 0.132 3.868 13 H 0.086 0.914 14 C 0.155 3.845 15 H -0.008 1.008 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.099 3.901 19 N -0.588 5.588 20 C 0.558 3.442 21 O -0.573 6.573 22 C -0.138 4.138 23 C -0.059 4.059 24 C -0.121 4.121 25 C -0.048 4.048 26 C 0.016 3.984 27 N -0.526 5.526 28 C 0.272 3.728 29 N -0.598 5.598 30 H 0.430 0.570 31 C 0.066 3.934 32 H 0.246 0.754 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.159 0.841 44 H 0.177 0.823 45 H 0.152 0.848 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -23.577 1.598 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.363 4.363 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.154 4.154 12 C 0.026 3.974 13 H 0.104 0.896 14 C 0.047 3.953 15 H 0.009 0.991 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.022 4.022 19 N -0.319 5.319 20 C 0.348 3.652 21 O -0.454 6.454 22 C -0.145 4.145 23 C -0.079 4.079 24 C -0.141 4.141 25 C -0.067 4.067 26 C -0.102 4.102 27 N -0.246 5.246 28 C -0.015 4.015 29 N -0.208 5.208 30 H 0.270 0.730 31 C -0.047 4.047 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.177 0.823 44 H 0.194 0.806 45 H 0.170 0.830 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 6.663 -24.023 1.072 24.953 hybrid contribution -0.698 2.946 -0.415 3.056 sum 5.965 -21.077 0.657 21.914 Atomic orbital electron populations 1.70175 1.06513 1.25303 1.58346 1.25693 0.96535 1.01179 1.02711 0.85069 0.77849 0.79043 0.77330 1.21657 1.22245 1.18737 1.19411 0.91030 0.83124 1.42692 0.89316 1.44336 1.02023 1.00858 1.86359 1.21436 0.83911 0.91180 0.97679 1.22741 0.96214 0.94865 1.01607 1.21948 0.96173 0.80315 0.98924 0.89577 1.20797 0.94419 0.84980 0.95117 0.99051 1.21411 0.95391 0.97270 1.00893 1.21885 0.99789 0.92468 1.01674 1.22288 0.78747 0.99810 1.01320 1.47964 1.15896 1.09442 1.58633 1.18677 0.83474 0.86067 0.77006 1.90753 1.25202 1.79023 1.50432 1.18803 1.09198 0.92639 0.93818 1.21503 0.94098 0.95245 0.97019 1.21238 1.01261 0.93501 0.98089 1.20841 0.95310 1.00771 0.89781 1.19489 1.05662 0.90928 0.94091 1.70525 1.20291 1.29356 1.04435 1.26294 0.95919 0.80048 0.99234 1.43358 1.52754 1.14986 1.09725 0.73011 1.18884 1.02053 0.96143 0.87642 0.94458 0.95526 0.98366 0.91754 0.90707 0.91186 0.92598 0.86752 0.92847 0.88285 0.87197 0.82336 0.80552 0.82996 0.72516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.75 10.46 21.65 0.23 -58.52 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.23 -13.04 9.94 84.03 0.84 -12.20 16 8 H 0.09 4.64 7.31 -2.91 -0.02 4.62 16 9 N -0.61 -32.01 3.35 -671.59 -2.25 -34.26 16 10 C 0.18 9.73 5.47 86.87 0.48 10.20 16 11 C -0.12 -5.04 5.12 31.56 0.16 -4.87 16 12 C 0.13 4.85 3.28 45.92 0.15 5.00 16 13 H 0.09 3.13 8.13 -2.39 -0.02 3.11 16 14 C 0.16 6.40 2.57 45.31 0.12 6.52 16 15 H -0.01 -0.36 8.04 -2.39 -0.02 -0.38 16 16 C -0.11 -3.53 5.45 30.26 0.16 -3.37 16 17 C -0.12 -2.58 5.92 30.79 0.18 -2.39 16 18 C 0.10 1.91 5.13 86.02 0.44 2.35 16 19 N -0.59 -16.96 2.92 -796.10 -2.32 -19.28 16 20 C 0.56 17.18 7.27 86.69 0.63 17.81 16 21 O -0.57 -21.91 13.73 -4.00 -0.05 -21.96 16 22 C -0.14 -3.37 5.00 -20.07 -0.10 -3.47 16 23 C -0.06 -0.96 7.53 22.57 0.17 -0.79 16 24 C -0.12 -1.50 9.99 22.20 0.22 -1.27 16 25 C -0.05 -0.80 10.09 22.54 0.23 -0.57 16 26 C 0.02 0.37 7.22 39.41 0.28 0.66 16 27 N -0.53 -12.33 11.28 -192.02 -2.17 -14.49 16 28 C 0.27 4.95 12.97 180.03 2.34 7.29 16 29 N -0.60 -13.44 6.21 -190.50 -1.18 -14.63 16 30 H 0.43 9.50 8.96 -92.71 -0.83 8.67 16 31 C 0.07 1.67 6.95 39.26 0.27 1.94 16 32 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.03 1.55 7.19 -2.38 -0.02 1.53 16 34 H 0.00 -0.12 7.81 -2.39 -0.02 -0.13 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 3.42 6.03 -2.39 -0.01 3.41 16 37 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 38 H 0.06 1.89 7.70 -2.39 -0.02 1.87 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 1.67 5.21 -2.39 -0.01 1.66 16 43 H 0.16 1.83 7.13 -2.91 -0.02 1.81 16 44 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 45 H 0.15 1.87 8.06 -2.92 -0.02 1.85 16 46 H 0.26 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -80.39 360.90 1.50 -78.89 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.19 Total: 17.00 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 7.04 Total: 19.36 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -7.70 Total: -141.18 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -80.39 1.50 -78.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049805629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.295 kcal (2) G-P(sol) polarization free energy of solvation -80.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds