Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48501 * 109.47276 * 239.99959 * 3 2 1 5 5 H 1.48495 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46918 * 120.00176 * 3 2 1 7 7 C 1.38811 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.47751 * 126.22505 * 359.60888 * 9 7 2 11 11 C 1.55466 * 106.84753 * 174.02936 * 10 9 7 12 12 C 1.53428 * 101.67624 * 337.87697 * 11 10 9 13 13 H 1.08998 * 111.75089 * 281.77206 * 12 11 10 14 14 C 1.45030 * 126.55734 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70520 * 96.49012 * 14 9 7 16 16 C 1.51089 * 119.18564 * 331.20504 * 14 9 7 17 17 C 1.53864 * 107.40152 * 176.70268 * 16 14 9 18 18 C 1.52877 * 111.43787 * 56.88464 * 17 16 14 19 19 N 1.45722 * 116.37935 * 152.72892 * 12 11 10 20 20 C 1.34773 * 122.22869 * 9.91225 * 19 12 11 21 21 O 1.21590 * 120.00148 * 354.32970 * 20 19 12 22 22 C 1.47576 * 120.00217 * 174.33158 * 20 19 12 23 23 C 1.41759 * 120.01231 * 321.96003 * 22 20 19 24 24 C 1.35629 * 119.54313 * 179.97438 * 23 22 20 25 25 C 1.41177 * 119.50302 * 359.97438 * 24 23 22 26 26 N 1.32415 * 132.11449 * 180.02562 * 25 24 23 27 27 C 1.33593 * 109.22484 * 180.02562 * 26 25 24 28 28 C 1.34993 * 108.66147 * 359.97438 * 27 26 25 29 29 N 1.37009 * 107.14454 * 0.02562 * 28 27 26 30 30 C 1.35917 * 132.42409 * 180.29583 * 29 28 27 31 31 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.62183 * 54.90768 * 10 9 7 33 33 H 1.08998 * 110.44485 * 293.60679 * 10 9 7 34 34 H 1.09003 * 110.98477 * 219.77887 * 11 10 9 35 35 H 1.08998 * 110.98958 * 95.97909 * 11 10 9 36 36 H 1.09000 * 109.88147 * 296.19441 * 16 14 9 37 37 H 1.09000 * 109.87932 * 57.20308 * 16 14 9 38 38 H 1.08994 * 109.07275 * 177.48962 * 17 16 14 39 39 H 1.09003 * 109.06839 * 296.43812 * 17 16 14 40 40 H 1.09007 * 109.14220 * 191.10198 * 18 17 16 41 41 H 1.08997 * 109.09088 * 71.91826 * 18 17 16 42 42 H 1.08007 * 120.23151 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.24683 * 180.02562 * 24 23 22 44 44 H 1.08006 * 125.67080 * 180.02562 * 27 26 25 45 45 H 1.08001 * 126.42939 * 180.02562 * 28 27 26 46 46 H 1.07998 * 119.75432 * 359.92664 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1433 -2.5482 0.0081 11 6 -0.4318 -4.0676 -0.1504 12 6 0.8682 -4.5648 -0.7960 13 1 0.9029 -4.3370 -1.8614 14 6 1.9024 -3.7186 -0.0005 15 1 1.9344 -4.0858 1.0253 16 6 3.2561 -3.9348 -0.6359 17 6 3.6400 -5.4077 -0.4111 18 6 2.5814 -6.3538 -0.9779 19 7 1.2248 -5.9554 -0.5458 20 6 0.3746 -6.8210 0.0410 21 8 -0.6912 -6.4273 0.4740 22 6 0.7372 -8.2467 0.1580 23 6 1.4298 -8.8912 -0.8977 24 6 1.7588 -10.2017 -0.7798 25 6 1.4068 -10.9041 0.3931 26 7 1.5981 -12.1598 0.7673 27 6 1.0724 -12.3418 1.9819 28 6 0.5317 -11.1768 2.3975 29 7 0.7361 -10.2586 1.4014 30 6 0.4107 -8.9440 1.2853 31 1 -0.4850 0.8401 0.0004 32 1 -0.5764 -1.9981 -0.8272 33 1 -0.5602 -2.1863 0.9479 34 1 -1.2841 -4.2365 -0.8085 35 1 -0.5906 -4.5381 0.8199 36 1 3.2020 -3.7247 -1.7041 37 1 3.9938 -3.2836 -0.1671 38 1 4.5946 -5.6053 -0.8986 39 1 3.7435 -5.5895 0.6587 40 1 2.7847 -7.3669 -0.6306 41 1 2.6304 -6.3325 -2.0666 42 1 1.6937 -8.3424 -1.7897 43 1 2.2868 -10.7038 -1.5770 44 1 1.0795 -13.2670 2.5391 45 1 0.0318 -11.0014 3.3387 46 1 -0.1133 -8.4485 2.0891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049837366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 110.304807 kcal Electronic energy + Delta-G solvation = -29938.271520 eV Core-core repulsion = 26023.861013 eV Total energy + Delta-G solvation = -3914.410507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12482 -40.61640 -38.30086 -37.04197 -35.57423 -34.03026 -32.71140 -32.29339 -30.79511 -29.15088 -28.88443 -28.26915 -25.42208 -24.57576 -23.96031 -23.15945 -22.08562 -21.55110 -21.04573 -19.86775 -19.33197 -18.20546 -17.30638 -16.68500 -16.34340 -16.26307 -15.54428 -15.30249 -15.18539 -14.89680 -14.68188 -14.41213 -14.26577 -14.00686 -13.79523 -13.37460 -13.26464 -13.01153 -12.54713 -12.36261 -12.11773 -12.05908 -11.86163 -11.65923 -11.43158 -11.07429 -10.88275 -10.74160 -10.57137 -10.52662 -10.46018 -10.14832 -10.06368 -9.90989 -9.65926 -9.27670 -9.07402 -8.60068 -8.37224 -8.19931 -6.86312 -5.72075 -3.07241 0.30393 0.77107 2.12359 2.34980 2.82511 3.00336 3.29271 3.38738 3.43185 3.44687 3.88421 4.11749 4.27538 4.40599 4.46983 4.57035 4.76299 4.96736 4.99900 5.01499 5.12145 5.21187 5.29350 5.37756 5.49395 5.50288 5.56946 5.62344 5.70605 5.71433 5.80852 5.92668 6.02308 6.05563 6.18993 6.23487 6.27215 6.33732 6.49427 6.64140 6.66655 6.71217 6.84213 7.11541 7.49704 7.51495 7.57031 7.64545 7.82289 8.17751 8.24136 9.17858 9.81133 10.47953 11.39120 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.002663 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.424330 B =10512.388029 C =10974.098261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.135 4.135 12 C 0.116 3.884 13 H 0.084 0.916 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.101 3.899 19 N -0.588 5.588 20 C 0.570 3.430 21 O -0.523 6.523 22 C -0.148 4.148 23 C -0.080 4.080 24 C -0.085 4.085 25 C 0.230 3.770 26 N -0.494 5.494 27 C 0.032 3.968 28 C -0.095 4.095 29 N -0.366 5.366 30 C 0.122 3.878 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -21.320 -0.216 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.012 3.988 13 H 0.102 0.898 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.022 4.022 19 N -0.320 5.320 20 C 0.357 3.643 21 O -0.400 6.400 22 C -0.155 4.155 23 C -0.104 4.104 24 C -0.105 4.105 25 C -0.014 4.014 26 N -0.214 5.214 27 C -0.118 4.118 28 C -0.224 4.224 29 N -0.038 5.038 30 C -0.003 4.003 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.200 0.800 45 H 0.202 0.798 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.890 -21.488 -0.354 21.840 hybrid contribution 0.080 1.479 0.587 1.593 sum 3.970 -20.009 0.233 20.401 Atomic orbital electron populations 1.69941 1.04886 1.25211 1.56625 1.24809 0.95673 0.97652 1.02140 0.86227 0.78480 0.83335 0.77859 1.21152 1.21606 1.21219 1.18940 0.90328 0.82237 1.44207 0.90427 1.43937 1.01863 0.99336 1.86510 1.21642 0.83646 0.88732 1.01136 1.23060 0.94408 0.98209 1.01634 1.22535 0.99116 0.77661 0.99512 0.89808 1.20761 0.91375 0.87204 0.95628 0.96479 1.21431 0.98518 0.94096 1.01404 1.21934 0.97603 0.95692 1.01592 1.22109 0.81534 0.98971 0.99574 1.47855 1.14057 1.11089 1.59010 1.17668 0.84171 0.83948 0.78555 1.90830 1.23587 1.77805 1.47752 1.19534 1.04703 0.95819 0.95406 1.21263 0.96185 0.94089 0.98828 1.20171 1.02068 0.93245 0.95022 1.21158 0.99218 0.89382 0.91652 1.70745 1.24362 1.12710 1.13546 1.22550 0.98413 0.98026 0.92858 1.22800 1.13630 0.89521 0.96497 1.42814 1.37139 1.08324 1.15522 1.21614 0.97507 0.81566 0.99640 0.93636 0.92378 0.94395 0.92130 0.89526 0.91628 0.91392 0.90674 0.91847 0.89587 0.91086 0.83067 0.82577 0.80030 0.79759 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.41 55.49 0.58 -26.22 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.17 9.94 -15.06 -0.15 -6.32 16 8 H 0.08 2.00 7.32 -52.49 -0.38 1.61 16 9 N -0.59 -14.71 3.32 -163.78 -0.54 -15.25 16 10 C 0.17 4.25 5.45 -2.05 -0.01 4.24 16 11 C -0.13 -2.73 5.11 -25.20 -0.13 -2.86 16 12 C 0.12 2.06 3.32 -66.79 -0.22 1.83 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 14 C 0.16 3.17 2.60 -68.34 -0.18 2.99 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 16 C -0.12 -1.86 5.44 -27.24 -0.15 -2.01 16 17 C -0.13 -1.51 5.94 -26.34 -0.16 -1.66 16 18 C 0.10 1.06 4.84 -3.36 -0.02 1.04 16 19 N -0.59 -8.34 2.91 -165.09 -0.48 -8.82 16 20 C 0.57 8.25 7.35 -12.45 -0.09 8.16 16 21 O -0.52 -9.30 13.56 5.29 0.07 -9.23 16 22 C -0.15 -1.67 5.20 -105.37 -0.55 -2.22 16 23 C -0.08 -0.72 7.42 -39.17 -0.29 -1.01 16 24 C -0.08 -0.77 10.09 -39.40 -0.40 -1.17 16 25 C 0.23 2.63 7.81 -155.92 -1.22 1.42 16 26 N -0.49 -5.99 11.31 -12.72 -0.14 -6.13 16 27 C 0.03 0.30 11.82 -17.94 -0.21 0.09 16 28 C -0.09 -0.84 11.75 -16.39 -0.19 -1.03 16 29 N -0.37 -3.92 2.93 -62.31 -0.18 -4.10 16 30 C 0.12 1.31 10.49 -16.37 -0.17 1.13 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.56 7.11 -51.93 -0.37 1.19 16 33 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.83 6.02 -51.93 -0.31 1.52 16 36 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 37 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.74 4.81 -51.92 -0.25 0.49 16 41 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.15 1.06 6.42 -52.48 -0.34 0.72 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.17 1.68 7.99 -52.49 -0.42 1.26 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -33.56 359.92 -10.76 -44.32 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.23 Total: 0.93 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -4.23 Total: 2.34 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.77 Total: -60.53 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.56 -10.76 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049837366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.628 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds