Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48501 * 109.47276 * 239.99959 * 3 2 1 5 5 H 1.48495 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46918 * 120.00176 * 3 2 1 7 7 C 1.38811 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.47751 * 126.22505 * 359.60888 * 9 7 2 11 11 C 1.55466 * 106.84753 * 174.02936 * 10 9 7 12 12 C 1.53428 * 101.67624 * 337.87697 * 11 10 9 13 13 H 1.08998 * 111.75089 * 281.77206 * 12 11 10 14 14 C 1.45030 * 126.55734 * 180.02562 * 9 7 2 15 15 H 1.08998 * 108.70520 * 96.49012 * 14 9 7 16 16 C 1.51089 * 119.18564 * 331.20504 * 14 9 7 17 17 C 1.53864 * 107.40152 * 176.70268 * 16 14 9 18 18 C 1.52877 * 111.43787 * 56.88464 * 17 16 14 19 19 N 1.45722 * 116.37935 * 152.72892 * 12 11 10 20 20 C 1.34773 * 122.22869 * 9.91225 * 19 12 11 21 21 O 1.21590 * 120.00148 * 354.32970 * 20 19 12 22 22 C 1.47576 * 120.00217 * 174.33158 * 20 19 12 23 23 C 1.41759 * 120.01231 * 321.96003 * 22 20 19 24 24 C 1.35629 * 119.54313 * 179.97438 * 23 22 20 25 25 C 1.41177 * 119.50302 * 359.97438 * 24 23 22 26 26 N 1.32415 * 132.11449 * 180.02562 * 25 24 23 27 27 C 1.33593 * 109.22484 * 180.02562 * 26 25 24 28 28 C 1.34993 * 108.66147 * 359.97438 * 27 26 25 29 29 N 1.37009 * 107.14454 * 0.02562 * 28 27 26 30 30 C 1.35917 * 132.42409 * 180.29583 * 29 28 27 31 31 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.62183 * 54.90768 * 10 9 7 33 33 H 1.08998 * 110.44485 * 293.60679 * 10 9 7 34 34 H 1.09003 * 110.98477 * 219.77887 * 11 10 9 35 35 H 1.08998 * 110.98958 * 95.97909 * 11 10 9 36 36 H 1.09000 * 109.88147 * 296.19441 * 16 14 9 37 37 H 1.09000 * 109.87932 * 57.20308 * 16 14 9 38 38 H 1.08994 * 109.07275 * 177.48962 * 17 16 14 39 39 H 1.09003 * 109.06839 * 296.43812 * 17 16 14 40 40 H 1.09007 * 109.14220 * 191.10198 * 18 17 16 41 41 H 1.08997 * 109.09088 * 71.91826 * 18 17 16 42 42 H 1.08007 * 120.23151 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.24683 * 180.02562 * 24 23 22 44 44 H 1.08006 * 125.67080 * 180.02562 * 27 26 25 45 45 H 1.08001 * 126.42939 * 180.02562 * 28 27 26 46 46 H 1.07998 * 119.75432 * 359.92664 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1433 -2.5482 0.0081 11 6 -0.4318 -4.0676 -0.1504 12 6 0.8682 -4.5648 -0.7960 13 1 0.9029 -4.3370 -1.8614 14 6 1.9024 -3.7186 -0.0005 15 1 1.9344 -4.0858 1.0253 16 6 3.2561 -3.9348 -0.6359 17 6 3.6400 -5.4077 -0.4111 18 6 2.5814 -6.3538 -0.9779 19 7 1.2248 -5.9554 -0.5458 20 6 0.3746 -6.8210 0.0410 21 8 -0.6912 -6.4273 0.4740 22 6 0.7372 -8.2467 0.1580 23 6 1.4298 -8.8912 -0.8977 24 6 1.7588 -10.2017 -0.7798 25 6 1.4068 -10.9041 0.3931 26 7 1.5981 -12.1598 0.7673 27 6 1.0724 -12.3418 1.9819 28 6 0.5317 -11.1768 2.3975 29 7 0.7361 -10.2586 1.4014 30 6 0.4107 -8.9440 1.2853 31 1 -0.4850 0.8401 0.0004 32 1 -0.5764 -1.9981 -0.8272 33 1 -0.5602 -2.1863 0.9479 34 1 -1.2841 -4.2365 -0.8085 35 1 -0.5906 -4.5381 0.8199 36 1 3.2020 -3.7247 -1.7041 37 1 3.9938 -3.2836 -0.1671 38 1 4.5946 -5.6053 -0.8986 39 1 3.7435 -5.5895 0.6587 40 1 2.7847 -7.3669 -0.6306 41 1 2.6304 -6.3325 -2.0666 42 1 1.6937 -8.3424 -1.7897 43 1 2.2868 -10.7038 -1.5770 44 1 1.0795 -13.2670 2.5391 45 1 0.0318 -11.0014 3.3387 46 1 -0.1133 -8.4485 2.0891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049837366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = 90.585052 kcal Electronic energy + Delta-G solvation = -29939.126633 eV Core-core repulsion = 26023.861013 eV Total energy + Delta-G solvation = -3915.265620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.86702 -41.84474 -39.60281 -37.98586 -36.99332 -34.83457 -34.24568 -33.84899 -31.84428 -30.55955 -29.96742 -29.56995 -26.69667 -26.27703 -24.97043 -24.01772 -22.86747 -22.82468 -22.44183 -21.50445 -20.51557 -19.11327 -18.50234 -18.10535 -17.25287 -17.12639 -16.99981 -16.64772 -16.30737 -16.24271 -15.68028 -15.59020 -15.44055 -15.13780 -15.00909 -14.61495 -14.28720 -14.25870 -14.00999 -13.81462 -13.34107 -13.17471 -13.00844 -12.87976 -12.74847 -12.67446 -12.32156 -12.24071 -12.10181 -11.81359 -11.75131 -11.70436 -11.52366 -11.41991 -11.23579 -10.77513 -10.49784 -9.93945 -9.60565 -8.93255 -8.90394 -7.83202 -5.20579 -0.47978 0.04154 1.29931 1.46245 1.49550 1.50832 1.55730 1.90231 2.00473 2.47515 2.50868 3.14616 3.25698 3.34774 3.46304 3.54044 3.64254 3.86311 3.92311 4.01801 4.02237 4.08560 4.25663 4.32452 4.36892 4.41025 4.48615 4.57843 4.59821 4.65947 4.78029 4.83171 4.88349 4.95176 5.00924 5.02816 5.11728 5.17061 5.29895 5.35621 5.42779 5.49658 5.60515 5.61553 5.61960 5.74780 5.90638 6.19738 6.39658 6.78198 7.03651 7.07255 7.77331 8.45568 9.27527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.002663 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.424330 B =10512.388029 C =10974.098261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.611 5.611 10 C 0.183 3.817 11 C -0.119 4.119 12 C 0.134 3.866 13 H 0.091 0.909 14 C 0.152 3.848 15 H -0.003 1.003 16 C -0.111 4.111 17 C -0.121 4.121 18 C 0.095 3.905 19 N -0.587 5.587 20 C 0.570 3.430 21 O -0.565 6.565 22 C -0.152 4.152 23 C -0.075 4.075 24 C -0.079 4.079 25 C 0.207 3.793 26 N -0.523 5.523 27 C 0.021 3.979 28 C -0.096 4.096 29 N -0.372 5.372 30 C 0.120 3.880 31 H 0.246 0.754 32 H 0.027 0.973 33 H -0.004 1.004 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.178 0.822 43 H 0.182 0.818 44 H 0.210 0.790 45 H 0.214 0.786 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -23.784 -1.282 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.106 0.894 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.157 4.157 12 C 0.029 3.971 13 H 0.108 0.892 14 C 0.044 3.956 15 H 0.015 0.985 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.025 4.025 19 N -0.318 5.318 20 C 0.358 3.642 21 O -0.445 6.445 22 C -0.158 4.158 23 C -0.099 4.099 24 C -0.099 4.099 25 C -0.037 4.037 26 N -0.243 5.243 27 C -0.128 4.128 28 C -0.224 4.224 29 N -0.045 5.045 30 C -0.005 4.005 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.195 0.805 43 H 0.199 0.801 44 H 0.227 0.773 45 H 0.230 0.770 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.391 -24.017 -1.425 24.894 hybrid contribution -0.695 2.141 1.028 2.474 sum 5.697 -21.876 -0.396 22.609 Atomic orbital electron populations 1.70178 1.06473 1.25304 1.58385 1.25684 0.96517 1.01155 1.02798 0.85160 0.77094 0.78805 0.78328 1.19744 1.22467 1.20520 1.19371 0.91033 0.83201 1.42629 0.89369 1.44202 1.02112 1.00930 1.86329 1.21334 0.83939 0.91323 0.97650 1.22797 0.96299 0.94937 1.01688 1.22097 0.96205 0.79833 0.99012 0.89168 1.20960 0.94421 0.84904 0.95291 0.98509 1.21411 0.95363 0.97321 1.00896 1.21921 0.99690 0.92380 1.01920 1.22478 0.78729 0.99841 1.01473 1.47875 1.15708 1.09271 1.58973 1.18080 0.83488 0.85163 0.77423 1.90808 1.25446 1.78805 1.49412 1.19244 1.06086 0.93808 0.96706 1.21412 0.95599 0.94088 0.98772 1.20488 1.01516 0.93118 0.94793 1.21657 0.99776 0.89626 0.92630 1.70730 1.25418 1.13305 1.14882 1.23115 0.97922 0.99361 0.92373 1.23405 1.12970 0.89007 0.97062 1.42947 1.37256 1.08274 1.15994 1.21656 0.97271 0.81778 0.99812 0.94491 0.95430 0.98587 0.91618 0.90484 0.91216 0.92696 0.86824 0.92488 0.86830 0.88004 0.80506 0.80082 0.77327 0.76957 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 10.41 21.65 0.23 -58.14 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.23 -12.86 9.94 84.03 0.84 -12.02 16 8 H 0.09 4.55 7.32 -2.91 -0.02 4.52 16 9 N -0.61 -31.40 3.32 -672.08 -2.23 -33.63 16 10 C 0.18 9.56 5.45 86.99 0.47 10.03 16 11 C -0.12 -5.00 5.11 31.59 0.16 -4.84 16 12 C 0.13 4.68 3.32 46.15 0.15 4.83 16 13 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.15 6.06 2.60 45.51 0.12 6.18 16 15 H 0.00 -0.11 8.06 -2.39 -0.02 -0.13 16 16 C -0.11 -3.37 5.44 30.26 0.16 -3.20 16 17 C -0.12 -2.35 5.94 30.84 0.18 -2.17 16 18 C 0.10 1.59 4.84 86.08 0.42 2.01 16 19 N -0.59 -15.43 2.91 -794.49 -2.32 -17.74 16 20 C 0.57 15.75 7.35 86.71 0.64 16.38 16 21 O -0.56 -20.22 13.56 -4.00 -0.05 -20.27 16 22 C -0.15 -3.10 5.20 -20.35 -0.11 -3.21 16 23 C -0.08 -1.07 7.42 22.54 0.17 -0.91 16 24 C -0.08 -1.18 10.09 22.39 0.23 -0.95 16 25 C 0.21 4.27 7.81 134.16 1.05 5.31 16 26 N -0.52 -11.67 11.31 -194.15 -2.20 -13.86 16 27 C 0.02 0.36 11.82 83.68 0.99 1.35 16 28 C -0.10 -1.49 11.75 83.14 0.98 -0.52 16 29 N -0.37 -7.26 2.93 -351.04 -1.03 -8.29 16 30 C 0.12 2.40 10.49 83.66 0.88 3.27 16 31 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 32 H 0.03 1.58 7.11 -2.39 -0.02 1.57 16 33 H 0.00 -0.24 7.82 -2.39 -0.02 -0.26 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.08 3.42 6.02 -2.39 -0.01 3.40 16 36 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 37 H 0.05 1.79 7.73 -2.39 -0.02 1.77 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.37 4.81 -2.38 -0.01 1.36 16 41 H 0.10 1.19 8.08 -2.39 -0.02 1.17 16 42 H 0.18 1.57 6.42 -2.91 -0.02 1.55 16 43 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 45 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.18 3.30 7.99 -2.91 -0.02 3.28 16 Total: -1.00 -78.10 359.92 3.22 -74.88 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.00 Total: 11.36 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.79 Total: 18.09 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -7.55 Total: -131.66 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.10 3.22 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049837366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.470 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds