Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99751 * 2 1 4 4 H 1.48493 * 109.47081 * 274.97994 * 3 2 1 5 5 H 1.48495 * 109.47066 * 34.98503 * 3 2 1 6 6 H 1.48508 * 109.46940 * 154.98026 * 3 2 1 7 7 C 1.38808 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00309 * 171.74983 * 7 2 1 9 9 N 1.36942 * 120.00084 * 351.74911 * 7 2 1 10 10 C 1.48376 * 126.55589 * 3.57630 * 9 7 2 11 11 C 1.55471 * 106.97396 * 185.50020 * 10 9 7 12 12 C 1.53435 * 101.67012 * 22.59769 * 11 10 9 13 13 H 1.09004 * 111.74396 * 78.22424 * 12 11 10 14 14 C 1.45021 * 126.56251 * 183.54662 * 9 7 2 15 15 H 1.09005 * 108.26990 * 263.94145 * 14 9 7 16 16 C 1.51086 * 119.18515 * 28.82181 * 14 9 7 17 17 C 1.53867 * 107.34477 * 183.87068 * 16 14 9 18 18 C 1.53144 * 111.46900 * 302.93010 * 17 16 14 19 19 N 1.45722 * 116.38215 * 207.26049 * 12 11 10 20 20 C 1.34773 * 122.23138 * 350.09971 * 19 12 11 21 21 O 1.21591 * 119.99878 * 5.31999 * 20 19 12 22 22 C 1.47572 * 120.00221 * 185.32770 * 20 19 12 23 23 C 1.41758 * 120.01598 * 32.47554 * 22 20 19 24 24 C 1.35627 * 119.54262 * 180.27411 * 23 22 20 25 25 C 1.41169 * 119.50780 * 359.44997 * 24 23 22 26 26 N 1.32420 * 132.12192 * 180.28125 * 25 24 23 27 27 C 1.33593 * 109.22523 * 179.97438 * 26 25 24 28 28 C 1.34997 * 108.66163 * 0.02562 * 27 26 25 29 29 N 1.37009 * 107.14372 * 359.97438 * 28 27 26 30 30 C 1.35915 * 132.41660 * 179.97438 * 29 28 27 31 31 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.96562 * 304.87614 * 10 9 7 33 33 H 1.09004 * 109.96616 * 66.12216 * 10 9 7 34 34 H 1.09009 * 110.99007 * 264.50810 * 11 10 9 35 35 H 1.09003 * 110.99320 * 140.69556 * 11 10 9 36 36 H 1.09006 * 109.87846 * 303.32855 * 16 14 9 37 37 H 1.08997 * 109.88462 * 64.41109 * 16 14 9 38 38 H 1.09006 * 109.06814 * 63.59820 * 17 16 14 39 39 H 1.08998 * 109.07200 * 182.61371 * 17 16 14 40 40 H 1.09001 * 109.32476 * 288.41476 * 18 17 16 41 41 H 1.09004 * 109.23853 * 169.08298 * 18 17 16 42 42 H 1.08002 * 120.22643 * 0.02562 * 23 22 20 43 43 H 1.08008 * 120.24157 * 179.72200 * 24 23 22 44 44 H 1.08005 * 125.67352 * 179.97438 * 27 26 25 45 45 H 1.08003 * 126.42912 * 180.02562 * 28 27 26 46 46 H 1.08003 * 119.75707 * 0.02654 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5922 7 6 2.0102 -1.2021 0.0005 8 1 3.0819 -1.2069 -0.1337 9 7 1.3363 -2.3819 0.1713 10 6 -0.1328 -2.5508 0.2929 11 6 -0.3924 -4.0503 0.6113 12 6 0.9548 -4.4787 1.2076 13 1 1.0606 -4.1523 2.2422 14 6 1.9217 -3.7052 0.2671 15 1 1.8872 -4.1664 -0.7199 16 6 3.3183 -3.8544 0.8240 17 6 3.7008 -5.3405 0.7110 18 6 2.6948 -6.2352 1.4410 19 7 1.3090 -5.8848 1.0632 20 6 0.4302 -6.8056 0.6201 21 8 -0.6697 -6.4599 0.2339 22 6 0.8028 -8.2334 0.6037 23 6 1.6761 -8.7498 1.5938 24 6 2.0166 -10.0623 1.5664 25 6 1.4868 -10.8972 0.5588 26 7 1.6416 -12.1870 0.3017 27 6 0.9209 -12.5104 -0.7756 28 6 0.2893 -11.4035 -1.2210 29 7 0.6385 -10.3754 -0.3854 30 6 0.3023 -9.0587 -0.3617 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5134 -1.9274 1.1020 33 1 -0.6176 -2.2803 -0.6452 34 1 -0.6126 -4.6100 -0.2978 35 1 -1.1951 -4.1614 1.3404 36 1 4.0148 -3.2473 0.2455 37 1 3.3356 -3.5456 1.8691 38 1 3.7324 -5.6210 -0.3418 39 1 4.6881 -5.4884 1.1486 40 1 2.8149 -6.1097 2.5171 41 1 2.8845 -7.2763 1.1798 42 1 2.0708 -8.1016 2.3622 43 1 2.6847 -10.4667 2.3125 44 1 0.8552 -13.4937 -1.2175 45 1 -0.3686 -11.3404 -2.0752 46 1 -0.3662 -8.6626 -1.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049837377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = 115.174134 kcal Electronic energy + Delta-G solvation = -29938.570955 eV Core-core repulsion = 26024.371598 eV Total energy + Delta-G solvation = -3914.199357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.13104 -40.63616 -38.28582 -37.06189 -35.57216 -34.02956 -32.70657 -32.29504 -30.79533 -29.18816 -28.89631 -28.24838 -25.43318 -24.60984 -23.97719 -23.14972 -22.09870 -21.54564 -21.03482 -19.87534 -19.33529 -18.21145 -17.35537 -16.67627 -16.32707 -16.26783 -15.50970 -15.30339 -15.20811 -14.89664 -14.67828 -14.43802 -14.27621 -14.00383 -13.79120 -13.38548 -13.25734 -12.97593 -12.54690 -12.38357 -12.11715 -12.05355 -11.86687 -11.64939 -11.42894 -11.03682 -10.91889 -10.72793 -10.53845 -10.52873 -10.46409 -10.14958 -10.05541 -9.91158 -9.67575 -9.27750 -9.07843 -8.58138 -8.37165 -8.19413 -6.86373 -5.74621 -3.06692 0.29256 0.75691 2.12499 2.33722 2.84528 3.00046 3.31222 3.38279 3.43772 3.45763 3.87993 4.11769 4.27028 4.39811 4.46936 4.56250 4.75814 4.95719 4.99361 5.01852 5.11925 5.20327 5.28510 5.35445 5.48640 5.49997 5.56802 5.61636 5.69749 5.70775 5.79802 5.92328 6.02161 6.05118 6.17904 6.23774 6.26896 6.33841 6.48774 6.63770 6.66530 6.70758 6.83909 7.10971 7.49335 7.51148 7.56735 7.63041 7.80476 8.17496 8.21858 9.16022 9.80408 10.48460 11.38254 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.002665 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.959783 B =10504.482369 C =11040.036646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.134 4.134 12 C 0.116 3.884 13 H 0.084 0.916 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.094 3.906 19 N -0.588 5.588 20 C 0.570 3.430 21 O -0.524 6.524 22 C -0.150 4.150 23 C -0.085 4.085 24 C -0.086 4.086 25 C 0.230 3.770 26 N -0.494 5.494 27 C 0.032 3.968 28 C -0.095 4.095 29 N -0.366 5.366 30 C 0.125 3.875 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -21.364 2.182 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.172 4.172 12 C 0.012 3.988 13 H 0.102 0.898 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.028 4.028 19 N -0.320 5.320 20 C 0.357 3.643 21 O -0.402 6.402 22 C -0.157 4.157 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.014 4.014 26 N -0.214 5.214 27 C -0.118 4.118 28 C -0.224 4.224 29 N -0.038 5.038 30 C 0.000 4.000 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.173 0.827 43 H 0.174 0.826 44 H 0.200 0.800 45 H 0.203 0.797 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.937 -21.514 2.330 21.995 hybrid contribution -0.040 1.429 -0.567 1.538 sum 3.896 -20.085 1.764 20.535 Atomic orbital electron populations 1.69962 1.04942 1.25141 1.56332 1.24810 0.95620 0.97627 1.02139 0.86180 0.78745 0.83841 0.77484 1.21713 1.21630 1.20638 1.18964 0.91242 0.82430 1.42989 0.90345 1.44079 1.02041 1.00555 1.85065 1.21735 0.83818 0.89116 1.00566 1.23046 0.94004 0.98566 1.01581 1.22507 0.99075 0.77414 0.99778 0.89827 1.20764 0.91391 0.87771 0.95071 0.96546 1.21439 0.98294 0.93998 1.01738 1.21989 0.97936 0.95919 1.00975 1.22376 0.80939 0.99930 0.99586 1.47833 1.11405 1.08583 1.64152 1.17649 0.84550 0.83872 0.78231 1.90825 1.21759 1.80444 1.47124 1.19526 1.02670 0.95199 0.98261 1.21409 0.95795 0.95134 0.98486 1.20179 1.01580 0.91613 0.97211 1.21167 0.95876 0.90702 0.93634 1.70749 1.24606 1.08875 1.17132 1.22554 0.96233 0.98888 0.94156 1.22805 1.10991 0.86779 1.01868 1.42821 1.31687 1.07450 1.21885 1.21643 0.97931 0.80704 0.99762 0.93688 0.92789 0.94084 0.89470 0.92100 0.91385 0.91643 0.91782 0.90735 0.90982 0.89049 0.82655 0.82568 0.80023 0.79744 0.80708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.53 55.49 0.58 -26.17 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.16 9.92 -15.06 -0.15 -6.31 16 8 H 0.08 2.03 7.36 -52.48 -0.39 1.64 16 9 N -0.59 -14.73 3.35 -163.28 -0.55 -15.28 16 10 C 0.17 4.22 5.47 -1.69 -0.01 4.21 16 11 C -0.13 -2.70 5.11 -25.19 -0.13 -2.83 16 12 C 0.12 2.06 3.32 -66.80 -0.22 1.84 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.16 3.17 2.57 -68.36 -0.18 2.99 16 15 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 16 C -0.12 -1.86 5.46 -27.24 -0.15 -2.01 16 17 C -0.13 -1.50 5.94 -26.20 -0.16 -1.66 16 18 C 0.09 0.98 4.78 -3.22 -0.02 0.96 16 19 N -0.59 -8.32 2.91 -164.94 -0.48 -8.80 16 20 C 0.57 8.24 7.42 -12.45 -0.09 8.15 16 21 O -0.52 -9.27 13.43 5.29 0.07 -9.20 16 22 C -0.15 -1.70 5.39 -105.37 -0.57 -2.26 16 23 C -0.08 -0.76 7.42 -39.17 -0.29 -1.05 16 24 C -0.09 -0.78 10.09 -39.40 -0.40 -1.18 16 25 C 0.23 2.63 7.81 -155.92 -1.22 1.42 16 26 N -0.49 -5.98 11.31 -12.72 -0.14 -6.13 16 27 C 0.03 0.30 11.82 -17.94 -0.21 0.09 16 28 C -0.09 -0.84 11.75 -16.39 -0.19 -1.03 16 29 N -0.37 -3.92 2.93 -62.30 -0.18 -4.11 16 30 C 0.12 1.34 10.48 -16.36 -0.17 1.17 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.44 7.23 -51.93 -0.38 1.07 16 33 H 0.04 1.11 7.80 -51.93 -0.41 0.71 16 34 H 0.09 1.84 6.03 -51.92 -0.31 1.53 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 37 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 41 H 0.09 0.77 4.41 -51.93 -0.23 0.54 16 42 H 0.16 1.07 5.76 -52.49 -0.30 0.77 16 43 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.18 1.70 7.89 -52.48 -0.41 1.29 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -33.66 359.03 -10.73 -44.40 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.18 Total: 0.92 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -4.24 Total: 2.25 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.77 Total: -60.48 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.66 -10.73 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049837377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.571 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds