Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48498 * 109.46835 * 274.99543 * 3 2 1 5 5 H 1.48495 * 109.47003 * 34.99358 * 3 2 1 6 6 H 1.48504 * 109.47156 * 154.99402 * 3 2 1 7 7 C 1.38816 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00016 * 174.98806 * 7 2 1 9 9 N 1.36942 * 120.00146 * 354.97798 * 7 2 1 10 10 C 1.48382 * 126.55854 * 5.04454 * 9 7 2 11 11 C 1.55469 * 106.97290 * 174.49624 * 10 9 7 12 12 C 1.53428 * 101.67338 * 337.39859 * 11 10 9 13 13 H 1.08998 * 111.75288 * 281.76647 * 12 11 10 14 14 C 1.45024 * 126.56086 * 185.06464 * 9 7 2 15 15 H 1.08999 * 108.25928 * 96.06339 * 14 9 7 16 16 C 1.51086 * 119.18516 * 331.18907 * 14 9 7 17 17 C 1.53872 * 107.33745 * 176.11299 * 16 14 9 18 18 C 1.52713 * 111.52549 * 56.92624 * 17 16 14 19 19 N 1.45726 * 116.37885 * 152.72584 * 12 11 10 20 20 C 1.34777 * 122.22938 * 9.86756 * 19 12 11 21 21 O 1.21616 * 119.99700 * 354.32254 * 20 19 12 22 22 C 1.47380 * 120.00368 * 174.32728 * 20 19 12 23 23 N 1.31576 * 126.82192 * 4.50431 * 22 20 19 24 24 N 1.28392 * 111.96594 * 179.84759 * 23 22 20 25 25 H 0.96994 * 124.37121 * 180.17999 * 24 23 22 26 26 C 1.37044 * 111.25257 * 0.43985 * 24 23 22 27 27 C 1.39128 * 134.72070 * 179.74915 * 26 24 23 28 28 C 1.36684 * 119.78318 * 179.97438 * 27 26 24 29 29 C 1.38896 * 120.89454 * 359.97438 * 28 27 26 30 30 C 1.36717 * 120.52493 * 0.03757 * 29 28 27 31 31 C 1.39194 * 119.51084 * 359.93405 * 30 29 28 32 32 H 0.96993 * 119.99642 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.96039 * 55.11795 * 10 9 7 34 34 H 1.08994 * 109.95956 * 293.87400 * 10 9 7 35 35 H 1.08996 * 110.98770 * 219.30192 * 11 10 9 36 36 H 1.08996 * 111.01980 * 95.51070 * 11 10 9 37 37 H 1.08999 * 109.88327 * 295.56895 * 16 14 9 38 38 H 1.08997 * 109.88551 * 56.65627 * 16 14 9 39 39 H 1.09001 * 109.06919 * 296.40017 * 17 16 14 40 40 H 1.09004 * 109.01776 * 177.42078 * 17 16 14 41 41 H 1.09002 * 109.16253 * 191.06792 * 18 17 16 42 42 H 1.08996 * 109.11957 * 71.85065 * 18 17 16 43 43 H 1.07997 * 120.10826 * 359.96643 * 27 26 24 44 44 H 1.08001 * 119.55375 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.74147 * 180.02562 * 29 28 27 46 46 H 1.07997 * 120.24787 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5966 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0872 -1.2041 -0.0812 9 7 1.3294 -2.3858 0.1049 10 6 -0.1442 -2.5595 0.1195 11 6 -0.4209 -4.0894 0.1115 12 6 0.8826 -4.6375 -0.4840 13 1 0.9148 -4.5153 -1.5666 14 6 1.9106 -3.7093 0.2226 15 1 1.9465 -3.9737 1.2794 16 6 3.2653 -3.9762 -0.3908 17 6 3.6592 -5.4175 -0.0232 18 6 2.6094 -6.4223 -0.4927 19 7 1.2502 -5.9940 -0.0988 20 6 0.4076 -6.8040 0.5722 21 8 -0.6607 -6.3774 0.9668 22 6 0.7808 -8.2067 0.8279 23 7 1.9274 -8.7831 0.5376 24 7 1.9468 -10.0178 0.8892 25 1 2.7034 -10.6114 0.7626 26 6 0.7585 -10.3901 1.4615 27 6 0.2576 -11.5727 1.9963 28 6 -1.0113 -11.6047 2.5033 29 6 -1.8121 -10.4698 2.4934 30 6 -1.3448 -9.2948 1.9737 31 6 -0.0551 -9.2403 1.4528 32 1 -0.4849 0.8400 -0.0004 33 1 -0.5821 -2.0976 -0.7652 34 1 -0.5628 -2.1104 1.0201 35 1 -1.2722 -4.3288 -0.5257 36 1 -0.5757 -4.4640 1.1233 37 1 3.2085 -3.8724 -1.4744 38 1 3.9987 -3.2774 0.0115 39 1 3.7652 -5.4927 1.0591 40 1 4.6143 -5.6552 -0.4916 41 1 2.8209 -7.3948 -0.0480 42 1 2.6571 -6.5075 -1.5783 43 1 0.8693 -12.4627 2.0107 44 1 -1.3963 -12.5246 2.9179 45 1 -2.8119 -10.5160 2.8993 46 1 -1.9714 -8.4152 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049877999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 107.989136 kcal Electronic energy + Delta-G solvation = -29993.137037 eV Core-core repulsion = 26078.626115 eV Total energy + Delta-G solvation = -3914.510922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69012 -40.09075 -37.98307 -37.60230 -35.34163 -32.85491 -32.55883 -31.98074 -30.45523 -30.12352 -28.79762 -28.07274 -25.34313 -24.40404 -23.62405 -22.89820 -22.58932 -21.38061 -20.64675 -19.60180 -18.94476 -18.17584 -17.50691 -16.56536 -16.17013 -15.99844 -15.55175 -15.33468 -14.87307 -14.59044 -14.41137 -14.25090 -14.04218 -13.82012 -13.61728 -13.26943 -12.92330 -12.44012 -12.39690 -12.30884 -12.13612 -11.81040 -11.69577 -11.40196 -11.21090 -10.91834 -10.78401 -10.62352 -10.40283 -10.33827 -10.19610 -10.01887 -9.85110 -9.77950 -9.53625 -9.07981 -9.02802 -8.51610 -8.37271 -8.11683 -6.75476 -5.65309 -2.98404 0.60765 1.13431 1.77832 2.42207 3.14375 3.30293 3.43727 3.49038 3.51234 3.64250 4.11181 4.26331 4.49333 4.55203 4.74046 4.86818 5.01249 5.15739 5.22988 5.26822 5.39352 5.44847 5.49654 5.57489 5.67213 5.73306 5.79259 5.89933 5.93288 6.05120 6.11033 6.18845 6.21442 6.29543 6.36676 6.38392 6.49543 6.55288 6.63311 6.76119 6.80034 6.90136 6.97446 7.27175 7.57422 7.64970 7.71480 7.77525 7.90069 8.30989 8.41717 9.25216 9.89152 10.58201 11.47324 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.002840 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.526279 B = 9855.822179 C =10778.493472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.135 4.135 12 C 0.116 3.884 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.019 0.981 16 C -0.117 4.117 17 C -0.126 4.126 18 C 0.086 3.914 19 N -0.583 5.583 20 C 0.601 3.399 21 O -0.520 6.520 22 C 0.023 3.977 23 N -0.211 5.211 24 N -0.422 5.422 25 H 0.445 0.555 26 C 0.066 3.934 27 C -0.125 4.125 28 C -0.082 4.082 29 C -0.144 4.144 30 C -0.038 4.038 31 C -0.110 4.110 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -26.033 1.908 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.012 3.988 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.155 4.155 17 C -0.165 4.165 18 C -0.037 4.037 19 N -0.315 5.315 20 C 0.387 3.613 21 O -0.395 6.395 22 C -0.149 4.149 23 N -0.040 5.040 24 N -0.140 5.140 25 H 0.289 0.711 26 C -0.047 4.047 27 C -0.146 4.146 28 C -0.103 4.103 29 C -0.163 4.163 30 C -0.058 4.058 31 C -0.118 4.118 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.080 0.920 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.088 -25.324 1.656 25.565 hybrid contribution 0.390 0.371 0.128 0.554 sum 3.478 -24.952 1.784 25.257 Atomic orbital electron populations 1.69956 1.04879 1.24986 1.56773 1.24805 0.95659 0.97573 1.02351 0.86151 0.78672 0.83854 0.77392 1.21759 1.21701 1.20713 1.18992 0.90652 0.82306 1.43378 0.90396 1.44103 1.01796 0.99889 1.85993 1.21718 0.83652 0.88556 1.01152 1.23059 0.94393 0.97652 1.02230 1.22483 0.98918 0.78797 0.98576 0.90020 1.20761 0.91369 0.86800 0.96098 0.96378 1.21454 0.98487 0.94661 1.00934 1.21877 0.97724 0.95376 1.01522 1.22411 0.80756 1.00323 1.00260 1.47810 1.14482 1.14372 1.54860 1.16714 0.84046 0.81945 0.78618 1.90795 1.23476 1.73820 1.51364 1.23099 0.90799 0.95619 1.05358 1.72753 1.21990 0.93294 1.15971 1.43201 1.13740 1.07862 1.49230 0.71064 1.19201 0.87804 0.96567 1.01123 1.19755 0.96974 0.94890 1.02986 1.20748 0.93041 0.98741 0.97779 1.20861 1.00670 0.92592 1.02216 1.20483 0.92948 0.98715 0.93670 1.19419 0.96068 0.91592 1.04689 0.93775 0.92994 0.93985 0.92120 0.89308 0.91859 0.91538 0.92038 0.91068 0.86274 0.92020 0.85544 0.85208 0.85215 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.49 55.49 0.58 -26.95 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.30 9.95 -15.06 -0.15 -6.45 16 8 H 0.08 2.09 7.28 -52.48 -0.38 1.71 16 9 N -0.59 -15.50 3.35 -163.28 -0.55 -16.04 16 10 C 0.17 4.45 5.46 -1.69 -0.01 4.45 16 11 C -0.13 -2.92 5.12 -25.20 -0.13 -3.04 16 12 C 0.12 2.29 3.33 -66.80 -0.22 2.07 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.16 3.43 2.57 -68.36 -0.18 3.26 16 15 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 16 C -0.12 -2.09 5.43 -27.24 -0.15 -2.23 16 17 C -0.13 -1.76 5.93 -26.42 -0.16 -1.92 16 18 C 0.09 1.18 6.21 -3.45 -0.02 1.16 16 19 N -0.58 -9.91 2.91 -165.27 -0.48 -10.39 16 20 C 0.60 10.46 7.71 -12.54 -0.10 10.36 16 21 O -0.52 -10.24 13.15 5.26 0.07 -10.17 16 22 C 0.02 0.33 7.11 -80.76 -0.57 -0.24 16 23 N -0.21 -2.54 8.58 34.46 0.30 -2.24 16 24 N -0.42 -3.82 6.85 32.34 0.22 -3.60 16 25 H 0.44 2.19 8.96 -190.49 -1.71 0.48 16 26 C 0.07 0.68 7.38 -84.21 -0.62 0.06 16 27 C -0.12 -0.96 10.03 -39.81 -0.40 -1.36 16 28 C -0.08 -0.61 9.96 -39.90 -0.40 -1.01 16 29 C -0.14 -1.28 9.98 -39.89 -0.40 -1.68 16 30 C -0.04 -0.45 9.88 -39.78 -0.39 -0.84 16 31 C -0.11 -1.45 6.34 -105.05 -0.67 -2.12 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.05 1.44 7.35 -51.93 -0.38 1.06 16 34 H 0.04 1.18 7.69 -51.93 -0.40 0.78 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 2.01 6.02 -51.93 -0.31 1.69 16 37 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 38 H 0.07 1.23 7.71 -51.93 -0.40 0.83 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.12 1.49 4.14 -68.31 -0.28 1.21 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.14 1.77 7.66 -52.49 -0.40 1.37 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -33.78 360.24 -11.73 -45.51 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.62 Total: 0.94 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.65 Total: 0.14 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.07 Total: -59.22 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.78 -11.73 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049877999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.500 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds