Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48498 * 109.46835 * 274.99543 * 3 2 1 5 5 H 1.48495 * 109.47003 * 34.99358 * 3 2 1 6 6 H 1.48504 * 109.47156 * 154.99402 * 3 2 1 7 7 C 1.38816 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00016 * 174.98806 * 7 2 1 9 9 N 1.36942 * 120.00146 * 354.97798 * 7 2 1 10 10 C 1.48382 * 126.55854 * 5.04454 * 9 7 2 11 11 C 1.55469 * 106.97290 * 174.49624 * 10 9 7 12 12 C 1.53428 * 101.67338 * 337.39859 * 11 10 9 13 13 H 1.08998 * 111.75288 * 281.76647 * 12 11 10 14 14 C 1.45024 * 126.56086 * 185.06464 * 9 7 2 15 15 H 1.08999 * 108.25928 * 96.06339 * 14 9 7 16 16 C 1.51086 * 119.18516 * 331.18907 * 14 9 7 17 17 C 1.53872 * 107.33745 * 176.11299 * 16 14 9 18 18 C 1.52713 * 111.52549 * 56.92624 * 17 16 14 19 19 N 1.45726 * 116.37885 * 152.72584 * 12 11 10 20 20 C 1.34777 * 122.22938 * 9.86756 * 19 12 11 21 21 O 1.21616 * 119.99700 * 354.32254 * 20 19 12 22 22 C 1.47380 * 120.00368 * 174.32728 * 20 19 12 23 23 N 1.31576 * 126.82192 * 4.50431 * 22 20 19 24 24 N 1.28392 * 111.96594 * 179.84759 * 23 22 20 25 25 H 0.96994 * 124.37121 * 180.17999 * 24 23 22 26 26 C 1.37044 * 111.25257 * 0.43985 * 24 23 22 27 27 C 1.39128 * 134.72070 * 179.74915 * 26 24 23 28 28 C 1.36684 * 119.78318 * 179.97438 * 27 26 24 29 29 C 1.38896 * 120.89454 * 359.97438 * 28 27 26 30 30 C 1.36717 * 120.52493 * 0.03757 * 29 28 27 31 31 C 1.39194 * 119.51084 * 359.93405 * 30 29 28 32 32 H 0.96993 * 119.99642 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.96039 * 55.11795 * 10 9 7 34 34 H 1.08994 * 109.95956 * 293.87400 * 10 9 7 35 35 H 1.08996 * 110.98770 * 219.30192 * 11 10 9 36 36 H 1.08996 * 111.01980 * 95.51070 * 11 10 9 37 37 H 1.08999 * 109.88327 * 295.56895 * 16 14 9 38 38 H 1.08997 * 109.88551 * 56.65627 * 16 14 9 39 39 H 1.09001 * 109.06919 * 296.40017 * 17 16 14 40 40 H 1.09004 * 109.01776 * 177.42078 * 17 16 14 41 41 H 1.09002 * 109.16253 * 191.06792 * 18 17 16 42 42 H 1.08996 * 109.11957 * 71.85065 * 18 17 16 43 43 H 1.07997 * 120.10826 * 359.96643 * 27 26 24 44 44 H 1.08001 * 119.55375 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.74147 * 180.02562 * 29 28 27 46 46 H 1.07997 * 120.24787 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5966 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0872 -1.2041 -0.0812 9 7 1.3294 -2.3858 0.1049 10 6 -0.1442 -2.5595 0.1195 11 6 -0.4209 -4.0894 0.1115 12 6 0.8826 -4.6375 -0.4840 13 1 0.9148 -4.5153 -1.5666 14 6 1.9106 -3.7093 0.2226 15 1 1.9465 -3.9737 1.2794 16 6 3.2653 -3.9762 -0.3908 17 6 3.6592 -5.4175 -0.0232 18 6 2.6094 -6.4223 -0.4927 19 7 1.2502 -5.9940 -0.0988 20 6 0.4076 -6.8040 0.5722 21 8 -0.6607 -6.3774 0.9668 22 6 0.7808 -8.2067 0.8279 23 7 1.9274 -8.7831 0.5376 24 7 1.9468 -10.0178 0.8892 25 1 2.7034 -10.6114 0.7626 26 6 0.7585 -10.3901 1.4615 27 6 0.2576 -11.5727 1.9963 28 6 -1.0113 -11.6047 2.5033 29 6 -1.8121 -10.4698 2.4934 30 6 -1.3448 -9.2948 1.9737 31 6 -0.0551 -9.2403 1.4528 32 1 -0.4849 0.8400 -0.0004 33 1 -0.5821 -2.0976 -0.7652 34 1 -0.5628 -2.1104 1.0201 35 1 -1.2722 -4.3288 -0.5257 36 1 -0.5757 -4.4640 1.1233 37 1 3.2085 -3.8724 -1.4744 38 1 3.9987 -3.2774 0.0115 39 1 3.7652 -5.4927 1.0591 40 1 4.6143 -5.6552 -0.4916 41 1 2.8209 -7.3948 -0.0480 42 1 2.6571 -6.5075 -1.5783 43 1 0.8693 -12.4627 2.0107 44 1 -1.3963 -12.5246 2.9179 45 1 -2.8119 -10.5160 2.8993 46 1 -1.9714 -8.4152 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049877999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 86.509890 kcal Electronic energy + Delta-G solvation = -29994.068447 eV Core-core repulsion = 26078.626115 eV Total energy + Delta-G solvation = -3915.442332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.54665 -41.55906 -39.15558 -38.71264 -36.93671 -34.37035 -33.98126 -33.38593 -31.25431 -31.20062 -30.46027 -29.64073 -26.79658 -26.29645 -24.53083 -24.05531 -23.40315 -22.83755 -22.24778 -21.38698 -20.09725 -19.04708 -18.75992 -18.15912 -17.35100 -17.10117 -16.89578 -16.54941 -16.23343 -16.13488 -15.83294 -15.42577 -15.40169 -14.97840 -14.89935 -14.66573 -14.28701 -14.20511 -13.88349 -13.40760 -13.22440 -13.15901 -13.03655 -12.82449 -12.69994 -12.51085 -12.37957 -12.06029 -11.97288 -11.82872 -11.74936 -11.67878 -11.47282 -11.19995 -11.15976 -10.77833 -10.51359 -9.77948 -9.63206 -9.06771 -8.89656 -7.84428 -5.20727 -0.24296 0.37858 0.85297 1.45489 1.48179 1.56859 1.60001 1.97020 2.18771 2.50668 2.82484 3.07955 3.34501 3.38316 3.50187 3.64386 3.87605 3.98333 4.06082 4.09368 4.14238 4.22256 4.30077 4.32476 4.44029 4.49493 4.57472 4.58119 4.66225 4.73737 4.89848 4.95624 5.03290 5.05642 5.09559 5.14635 5.23589 5.28720 5.42432 5.48274 5.49450 5.58875 5.60075 5.62447 5.73186 5.85204 6.13249 6.18161 6.40877 6.74892 7.05602 7.10491 7.75402 8.46225 9.28133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.002840 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.526279 B = 9855.822179 C =10778.493472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.185 3.815 11 C -0.118 4.118 12 C 0.131 3.869 13 H 0.086 0.914 14 C 0.154 3.846 15 H -0.004 1.004 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.084 3.916 19 N -0.587 5.587 20 C 0.596 3.404 21 O -0.558 6.558 22 C -0.019 4.019 23 N -0.198 5.198 24 N -0.394 5.394 25 H 0.465 0.535 26 C 0.060 3.940 27 C -0.109 4.109 28 C -0.081 4.081 29 C -0.131 4.131 30 C -0.078 4.078 31 C -0.137 4.137 32 H 0.246 0.754 33 H 0.024 0.976 34 H 0.003 0.997 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.080 0.920 43 H 0.168 0.832 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -30.208 1.776 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.060 3.940 11 C -0.157 4.157 12 C 0.026 3.974 13 H 0.103 0.897 14 C 0.046 3.954 15 H 0.013 0.987 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.038 4.038 19 N -0.319 5.319 20 C 0.384 3.616 21 O -0.435 6.435 22 C -0.187 4.187 23 N -0.029 5.029 24 N -0.116 5.116 25 H 0.315 0.685 26 C -0.053 4.053 27 C -0.130 4.130 28 C -0.102 4.102 29 C -0.150 4.150 30 C -0.099 4.099 31 C -0.144 4.144 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.098 0.902 43 H 0.186 0.814 44 H 0.187 0.813 45 H 0.167 0.833 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.791 -29.557 1.518 30.157 hybrid contribution -0.460 1.470 0.253 1.561 sum 5.332 -28.087 1.771 28.643 Atomic orbital electron populations 1.70186 1.06533 1.25307 1.58243 1.25721 0.96565 1.01203 1.02747 0.85042 0.77771 0.79072 0.77336 1.21147 1.22389 1.19084 1.19424 0.91356 0.83171 1.42269 0.89308 1.44362 1.02061 1.01415 1.85805 1.21410 0.83895 0.90826 0.97855 1.22795 0.96100 0.94754 1.02014 1.22100 0.96553 0.80482 0.98230 0.89656 1.20915 0.94250 0.84901 0.95336 0.98691 1.21424 0.95542 0.97304 1.00693 1.21853 0.99480 0.92472 1.01626 1.22677 0.78690 1.00898 1.01525 1.47865 1.15942 1.12996 1.55048 1.17128 0.83518 0.83220 0.77739 1.90756 1.25058 1.74922 1.52768 1.22527 0.92678 0.94546 1.08991 1.72522 1.20816 0.94436 1.15168 1.43236 1.14165 1.07044 1.47181 0.68521 1.19420 0.87507 0.96618 1.01798 1.20285 0.97267 0.94994 1.00478 1.21227 0.92696 0.99353 0.96897 1.21199 1.01727 0.91980 1.00140 1.20466 0.93172 0.99458 0.96776 1.19643 0.96966 0.92392 1.05427 0.94435 0.95791 0.97899 0.91467 0.90492 0.91460 0.92302 0.92545 0.87031 0.84550 0.90217 0.81432 0.81297 0.83251 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 10.49 21.65 0.23 -59.89 16 2 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 3 Si 0.98 47.09 29.56 68.60 2.03 49.11 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.23 -13.44 9.95 84.03 0.84 -12.61 16 8 H 0.09 4.80 7.28 -2.91 -0.02 4.78 16 9 N -0.61 -33.47 3.35 -670.50 -2.25 -35.72 16 10 C 0.19 10.24 5.46 86.87 0.47 10.72 16 11 C -0.12 -5.48 5.12 31.59 0.16 -5.32 16 12 C 0.13 5.35 3.33 46.14 0.15 5.50 16 13 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 14 C 0.15 6.86 2.57 45.50 0.12 6.97 16 15 H 0.00 -0.21 8.06 -2.39 -0.02 -0.23 16 16 C -0.11 -3.88 5.43 30.26 0.16 -3.72 16 17 C -0.12 -2.96 5.93 30.79 0.18 -2.78 16 18 C 0.08 2.14 6.21 86.02 0.53 2.67 16 19 N -0.59 -20.12 2.91 -795.03 -2.32 -22.44 16 20 C 0.60 21.56 7.71 86.65 0.67 22.23 16 21 O -0.56 -23.64 13.15 -4.08 -0.05 -23.70 16 22 C -0.02 -0.54 7.11 43.86 0.31 -0.23 16 23 N -0.20 -4.34 8.58 -44.89 -0.38 -4.73 16 24 N -0.39 -5.82 6.85 -51.60 -0.35 -6.17 16 25 H 0.47 2.52 8.96 -220.04 -1.97 0.55 16 26 C 0.06 1.06 7.38 39.19 0.29 1.34 16 27 C -0.11 -1.17 10.03 22.12 0.22 -0.95 16 28 C -0.08 -0.86 9.96 22.06 0.22 -0.64 16 29 C -0.13 -2.11 9.98 22.07 0.22 -1.89 16 30 C -0.08 -1.92 9.88 22.14 0.22 -1.70 16 31 C -0.14 -3.57 6.34 -20.14 -0.13 -3.69 16 32 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.02 1.43 7.35 -2.39 -0.02 1.41 16 34 H 0.00 0.17 7.69 -2.39 -0.02 0.15 16 35 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.08 3.77 6.02 -2.39 -0.01 3.76 16 37 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 38 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.14 3.07 4.14 -23.58 -0.10 2.97 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 44 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.12 3.27 7.66 -2.91 -0.02 3.25 16 Total: -1.00 -80.37 360.24 0.97 -79.40 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -1.04 Total: 11.84 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.11 Total: 12.28 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -5.07 Total: -128.94 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.37 0.97 -79.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049877999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.911 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds