Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99568 * 2 1 4 4 H 1.48496 * 109.46820 * 269.99801 * 3 2 1 5 5 H 1.48494 * 109.47302 * 29.99835 * 3 2 1 6 6 H 1.48502 * 109.47102 * 150.00162 * 3 2 1 7 7 C 1.38806 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.48378 * 126.56091 * 0.02562 * 9 7 2 11 11 C 1.55471 * 106.97372 * 185.50129 * 10 9 7 12 12 C 1.53427 * 101.67450 * 22.59569 * 11 10 9 13 13 H 1.09007 * 111.14323 * 77.99042 * 12 11 10 14 14 C 1.45018 * 126.55962 * 179.97438 * 9 7 2 15 15 H 1.09004 * 108.26618 * 263.93890 * 14 9 7 16 16 C 1.51093 * 119.18859 * 28.81382 * 14 9 7 17 17 C 1.53866 * 107.34095 * 183.88400 * 16 14 9 18 18 C 1.52715 * 111.52769 * 303.07837 * 17 16 14 19 19 N 1.45704 * 116.37584 * 207.32689 * 12 11 10 20 20 C 1.34774 * 122.21793 * 350.10816 * 19 12 11 21 21 O 1.21611 * 120.00390 * 354.58541 * 20 19 12 22 22 C 1.47392 * 120.00274 * 174.58144 * 20 19 12 23 23 N 1.31581 * 126.81745 * 5.05080 * 22 20 19 24 24 N 1.28383 * 111.96316 * 179.80921 * 23 22 20 25 25 H 0.97005 * 124.37475 * 180.16509 * 24 23 22 26 26 C 1.37048 * 111.25676 * 0.47154 * 24 23 22 27 27 C 1.39130 * 134.72694 * 179.69879 * 26 24 23 28 28 C 1.36681 * 119.78393 * 180.02562 * 27 26 24 29 29 C 1.38900 * 120.89402 * 359.97438 * 28 27 26 30 30 C 1.36718 * 120.52422 * 0.04043 * 29 28 27 31 31 C 1.39188 * 119.51180 * 359.95797 * 30 29 28 32 32 H 0.96998 * 120.00156 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.96054 * 66.11759 * 10 9 7 34 34 H 1.08998 * 109.96068 * 304.87940 * 10 9 7 35 35 H 1.09004 * 110.98481 * 264.50255 * 11 10 9 36 36 H 1.08997 * 111.01897 * 140.71399 * 11 10 9 37 37 H 1.08994 * 109.87968 * 64.42595 * 16 14 9 38 38 H 1.08995 * 109.93980 * 303.37609 * 16 14 9 39 39 H 1.09002 * 109.07049 * 182.54769 * 17 16 14 40 40 H 1.09007 * 109.01509 * 63.56741 * 17 16 14 41 41 H 1.09003 * 109.15826 * 168.93743 * 18 17 16 42 42 H 1.09001 * 109.15591 * 288.16836 * 18 17 16 43 43 H 1.07994 * 120.10500 * 0.05429 * 27 26 24 44 44 H 1.08001 * 119.55338 * 180.02562 * 28 27 26 45 45 H 1.08004 * 119.73280 * 180.02562 * 29 28 27 46 46 H 1.08003 * 120.24077 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1484 -2.5576 -0.0005 11 6 -0.4302 -4.0799 0.1425 12 6 0.8708 -4.5774 0.7857 13 1 0.8940 -4.3512 1.8517 14 6 1.9026 -3.7185 0.0005 15 1 1.9382 -4.0755 -1.0288 16 6 3.2561 -3.9348 0.6363 17 6 3.6454 -5.4041 0.3977 18 6 2.5920 -6.3602 0.9531 19 7 1.2348 -5.9633 0.5215 20 6 0.3901 -6.8265 -0.0768 21 8 -0.7506 -6.4868 -0.3265 22 6 0.8489 -8.1823 -0.4286 23 7 2.0148 -8.7198 -0.1404 24 7 2.1120 -9.9214 -0.5820 25 1 2.8931 -10.4852 -0.4683 26 6 0.9721 -10.3023 -1.2407 27 6 0.5598 -11.4585 -1.8957 28 6 -0.6817 -11.5102 -2.4651 29 6 -1.5424 -10.4219 -2.3993 30 6 -1.1623 -9.2736 -1.7621 31 6 0.0977 -9.1998 -1.1754 32 1 -0.4850 0.8400 0.0004 33 1 -0.5648 -2.1885 -0.9378 34 1 -0.5857 -2.0178 0.8394 35 1 -0.5850 -4.5416 -0.8328 36 1 -1.2831 -4.2598 0.7970 37 1 3.1990 -3.7355 1.7063 38 1 3.9926 -3.2766 0.1755 39 1 4.5997 -5.6034 0.8852 40 1 3.7509 -5.5741 -0.6739 41 1 2.8006 -7.3688 0.5962 42 1 2.6380 -6.3496 2.0421 43 1 1.2184 -12.3124 -1.9536 44 1 -0.9981 -12.4097 -2.9722 45 1 -2.5194 -10.4834 -2.8554 46 1 -1.8350 -8.4300 -1.7140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049878010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 106.859929 kcal Electronic energy + Delta-G solvation = -30037.457901 eV Core-core repulsion = 26122.898013 eV Total energy + Delta-G solvation = -3914.559888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68830 -40.08122 -37.97825 -37.61446 -35.34225 -32.84781 -32.56042 -31.98353 -30.45213 -30.12055 -28.80440 -28.06906 -25.34877 -24.41245 -23.61932 -22.90155 -22.58616 -21.38053 -20.63620 -19.58852 -18.92330 -18.17473 -17.53281 -16.56711 -16.17154 -15.99812 -15.56339 -15.38981 -14.87361 -14.60240 -14.36877 -14.21885 -14.05036 -13.83629 -13.61165 -13.29745 -12.85638 -12.43321 -12.38721 -12.30194 -12.14499 -11.84166 -11.68856 -11.39733 -11.21563 -10.89045 -10.81419 -10.55732 -10.41272 -10.33162 -10.18410 -10.01920 -9.85290 -9.78590 -9.56151 -9.16751 -9.02426 -8.55224 -8.36155 -8.11203 -6.77276 -5.65107 -2.99071 0.61290 1.14099 1.78499 2.42365 3.13873 3.31762 3.43639 3.48245 3.50325 3.65201 4.11677 4.26940 4.49589 4.54760 4.74667 4.87258 5.01286 5.16028 5.22790 5.27531 5.39860 5.44622 5.49874 5.57280 5.68259 5.73687 5.78418 5.89914 5.92900 6.06040 6.11913 6.18691 6.21999 6.30190 6.37014 6.38036 6.48703 6.55537 6.62737 6.76563 6.79462 6.90685 6.95147 7.24113 7.57643 7.63708 7.70262 7.77359 7.89364 8.30170 8.41343 9.24616 9.88398 10.56949 11.46979 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.002886 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.169406 B = 9701.320464 C =10547.316658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.116 3.884 13 H 0.083 0.917 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.126 4.126 18 C 0.082 3.918 19 N -0.582 5.582 20 C 0.600 3.400 21 O -0.521 6.521 22 C 0.024 3.976 23 N -0.211 5.211 24 N -0.422 5.422 25 H 0.445 0.555 26 C 0.067 3.933 27 C -0.125 4.125 28 C -0.082 4.082 29 C -0.144 4.144 30 C -0.038 4.038 31 C -0.111 4.111 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 -25.557 -1.452 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.167 4.167 12 C 0.012 3.988 13 H 0.101 0.899 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.165 4.165 18 C -0.041 4.041 19 N -0.314 5.314 20 C 0.386 3.614 21 O -0.395 6.395 22 C -0.148 4.148 23 N -0.040 5.040 24 N -0.140 5.140 25 H 0.289 0.711 26 C -0.047 4.047 27 C -0.146 4.146 28 C -0.103 4.103 29 C -0.163 4.163 30 C -0.058 4.058 31 C -0.118 4.118 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.657 -24.881 -1.056 25.171 hybrid contribution 0.444 0.404 -0.266 0.656 sum 4.100 -24.477 -1.322 24.853 Atomic orbital electron populations 1.69948 1.04851 1.24996 1.56931 1.24798 0.95670 0.97575 1.02381 0.86153 0.78558 0.83732 0.77514 1.21695 1.21723 1.20756 1.18987 0.90327 0.82224 1.43734 0.90388 1.44101 1.01823 0.99332 1.86525 1.21741 0.83623 0.88705 1.01118 1.22938 0.94741 0.97907 1.01155 1.22450 0.98785 0.78059 0.99477 0.89920 1.20768 0.91460 0.87116 0.95671 0.96516 1.21445 0.98414 0.94422 1.01203 1.21867 0.97750 0.95480 1.01370 1.22488 0.80827 1.01444 0.99376 1.47812 1.14710 1.11086 1.57808 1.16693 0.84880 0.81510 0.78344 1.90809 1.17905 1.76077 1.54752 1.23081 0.90858 0.96460 1.04360 1.72684 1.20173 0.94719 1.16427 1.43208 1.15185 1.10667 1.44974 0.71064 1.19200 0.88559 0.97005 0.99901 1.19754 0.97849 0.95421 1.01580 1.20748 0.92877 0.98776 0.97896 1.20862 1.00560 0.93250 1.01664 1.20481 0.93619 0.98353 0.93354 1.19414 0.96272 0.92560 1.03525 0.93756 0.94251 0.92492 0.90421 0.91778 0.91813 0.91592 0.91111 0.92115 0.85981 0.91927 0.85540 0.85204 0.85212 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 10.46 55.49 0.58 -26.91 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.09 7.31 -52.49 -0.38 1.71 16 9 N -0.59 -15.46 3.35 -163.27 -0.55 -16.00 16 10 C 0.17 4.42 5.47 -1.69 -0.01 4.41 16 11 C -0.13 -2.78 4.93 -25.20 -0.12 -2.91 16 12 C 0.12 2.30 3.33 -66.80 -0.22 2.08 16 13 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 14 C 0.16 3.42 2.57 -68.35 -0.18 3.25 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -2.08 5.45 -27.24 -0.15 -2.23 16 17 C -0.13 -1.76 5.93 -26.43 -0.16 -1.91 16 18 C 0.08 1.13 6.30 -3.45 -0.02 1.11 16 19 N -0.58 -9.92 2.91 -165.26 -0.48 -10.41 16 20 C 0.60 10.49 7.63 -12.54 -0.10 10.39 16 21 O -0.52 -10.26 13.42 5.27 0.07 -10.19 16 22 C 0.02 0.35 7.11 -80.75 -0.57 -0.22 16 23 N -0.21 -2.55 8.56 34.46 0.29 -2.26 16 24 N -0.42 -3.85 6.85 32.34 0.22 -3.63 16 25 H 0.44 2.22 8.96 -190.49 -1.71 0.51 16 26 C 0.07 0.69 7.38 -84.21 -0.62 0.07 16 27 C -0.12 -0.97 10.03 -39.81 -0.40 -1.37 16 28 C -0.08 -0.62 9.96 -39.90 -0.40 -1.01 16 29 C -0.14 -1.30 9.98 -39.89 -0.40 -1.70 16 30 C -0.04 -0.46 9.88 -39.78 -0.39 -0.85 16 31 C -0.11 -1.46 6.34 -105.05 -0.67 -2.13 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 34 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 35 H 0.08 1.74 6.38 -51.93 -0.33 1.41 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 38 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.12 1.53 3.96 -81.77 -0.32 1.21 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.14 1.79 7.67 -52.48 -0.40 1.38 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -33.70 360.48 -11.79 -45.48 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.68 Total: 0.94 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -4.65 Total: 0.22 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.07 Total: -59.21 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.70 -11.79 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049878010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.344 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds