Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48503 * 109.47288 * 269.99901 * 3 2 1 5 5 H 1.48497 * 109.47230 * 30.00125 * 3 2 1 6 6 H 1.48498 * 109.47124 * 150.00243 * 3 2 1 7 7 C 1.38811 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00060 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.46919 * 125.37769 * 180.02562 * 9 7 2 11 11 C 1.54177 * 106.26683 * 162.14322 * 10 9 7 12 12 H 1.09001 * 109.28623 * 271.45896 * 11 10 9 13 13 C 1.50713 * 110.50872 * 151.09259 * 11 10 9 14 14 C 1.51325 * 113.54804 * 289.39340 * 13 11 10 15 15 C 1.51632 * 111.98086 * 304.60870 * 14 13 11 16 16 N 1.44505 * 112.65012 * 42.76805 * 15 14 13 17 17 C 1.34775 * 116.63319 * 154.56584 * 16 15 14 18 18 O 1.21628 * 120.00162 * 174.50567 * 17 16 15 19 19 C 1.47259 * 120.00023 * 354.50830 * 17 16 15 20 20 C 1.38936 * 120.90792 * 52.05840 * 19 17 16 21 21 C 1.39766 * 119.19163 * 179.72041 * 20 19 17 22 22 C 1.35071 * 121.27351 * 0.60954 * 21 20 19 23 23 N 1.36230 * 121.76604 * 359.67501 * 22 21 20 24 24 N 1.40084 * 132.48188 * 180.02562 * 23 22 21 25 25 C 1.31357 * 108.88264 * 179.97438 * 24 23 22 26 26 C 1.38875 * 108.94337 * 0.02562 * 25 24 23 27 27 C 1.37180 * 120.19146 * 0.02562 * 23 22 21 28 28 C 1.43556 * 126.78053 * 335.23596 * 16 15 14 29 29 H 1.08995 * 107.49267 * 253.71847 * 28 16 15 30 30 C 1.46816 * 125.37425 * 359.97438 * 9 7 2 31 31 H 0.96996 * 119.99939 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.09596 * 42.94189 * 10 9 7 33 33 H 1.09005 * 110.09435 * 281.34841 * 10 9 7 34 34 H 1.09006 * 108.66620 * 168.33727 * 13 11 10 35 35 H 1.08999 * 108.66618 * 50.44646 * 13 11 10 36 36 H 1.08999 * 108.97693 * 183.96929 * 14 13 11 37 37 H 1.08993 * 108.98302 * 65.26088 * 14 13 11 38 38 H 1.08993 * 108.84548 * 163.58628 * 15 14 13 39 39 H 1.09005 * 108.84676 * 281.95044 * 15 14 13 40 40 H 1.08009 * 120.39849 * 0.02562 * 20 19 17 41 41 H 1.07996 * 119.36470 * 180.31221 * 21 20 19 42 42 H 1.08001 * 119.11790 * 179.65422 * 22 21 20 43 43 H 1.07998 * 125.52744 * 179.97438 * 25 24 23 44 44 H 1.08004 * 126.21767 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.83975 * 300.40049 * 30 9 7 46 46 H 1.08994 * 109.84266 * 61.30802 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9379 -3.7236 -0.0005 11 6 0.8372 -4.7032 0.4533 12 1 0.8501 -4.7806 1.5405 13 6 1.0638 -6.0670 -0.1469 14 6 0.8061 -6.1221 -1.6370 15 6 -0.5874 -5.6397 -1.9902 16 7 -0.9679 -4.4535 -1.2579 17 6 -1.8932 -3.6597 -1.8324 18 8 -2.3318 -2.7003 -1.2270 19 6 -2.3734 -3.9539 -3.1931 20 6 -2.8462 -5.2174 -3.5254 21 6 -3.2987 -5.4556 -4.8261 22 6 -3.2732 -4.4858 -5.7660 23 7 -2.8137 -3.2331 -5.4916 24 7 -2.6879 -2.0788 -6.2753 25 6 -2.1840 -1.1164 -5.5368 26 6 -1.9629 -1.6010 -4.2542 27 6 -2.3592 -2.9249 -4.2345 28 6 -0.4533 -4.0253 0.0120 29 1 -1.2261 -4.2104 0.7579 30 6 -0.1360 -2.5256 0.0005 31 1 -0.4850 0.8400 0.0004 32 1 2.7751 -3.7518 0.6968 33 1 2.2770 -3.9801 -1.0042 34 1 0.4043 -6.7799 0.3480 35 1 2.0960 -6.3632 0.0399 36 1 0.9225 -7.1505 -1.9791 37 1 1.5380 -5.4957 -2.1468 38 1 -0.6245 -5.4217 -3.0575 39 1 -1.3012 -6.4336 -1.7701 40 1 -2.8683 -6.0045 -2.7861 41 1 -3.6715 -6.4352 -5.0861 42 1 -3.6263 -4.7097 -6.7618 43 1 -1.9748 -0.1116 -5.8727 44 1 -1.5558 -1.0443 -3.4231 45 1 -0.5523 -2.0441 0.8855 46 1 -0.5512 -2.0698 -0.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050085937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 128.350491 kcal Electronic energy + Delta-G solvation = -31043.276540 eV Core-core repulsion = 27129.648552 eV Total energy + Delta-G solvation = -3913.627987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.88201 -40.54658 -37.81562 -36.99336 -35.44454 -33.34395 -32.69403 -31.95613 -30.64841 -29.66570 -28.53983 -27.16383 -25.66928 -24.85209 -23.70468 -22.70924 -22.20503 -21.64620 -20.67562 -19.56947 -17.96724 -17.48936 -17.29910 -16.71714 -16.17225 -15.78558 -15.69409 -15.49338 -15.15817 -14.57600 -14.21686 -14.14182 -13.94445 -13.73469 -13.64560 -13.22575 -12.99686 -12.57620 -12.34268 -12.23180 -12.03624 -11.91127 -11.64311 -11.31033 -11.05350 -10.95745 -10.77885 -10.74921 -10.62657 -10.31774 -10.26982 -10.20768 -10.01791 -9.88794 -9.59880 -9.34023 -9.14181 -8.46092 -8.01557 -7.53024 -6.67270 -5.55137 -2.91681 0.47206 1.11947 2.21162 2.81025 2.89968 3.22319 3.46957 3.51574 3.54045 3.59484 4.21696 4.41185 4.57314 4.59226 4.64532 4.84709 4.89558 4.91901 5.08615 5.18038 5.31472 5.35659 5.48949 5.55149 5.64092 5.65370 5.68220 5.74166 5.83527 5.92108 5.97001 5.99495 6.08135 6.13486 6.21490 6.23469 6.30700 6.44833 6.60255 6.72249 6.78334 6.80617 6.86103 7.11180 7.58551 7.59129 7.77147 7.84081 8.10104 8.40402 8.60036 9.34659 9.95524 10.59929 11.53345 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.005185 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.557077 B = 5398.757321 C = 7449.726804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.141 3.859 11 C -0.102 4.102 12 H 0.082 0.918 13 C -0.102 4.102 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.580 5.580 17 C 0.549 3.451 18 O -0.485 6.485 19 C -0.101 4.101 20 C -0.063 4.063 21 C -0.175 4.175 22 C 0.125 3.875 23 N -0.284 5.284 24 N -0.322 5.322 25 C 0.080 3.920 26 C -0.249 4.249 27 C 0.121 3.879 28 C 0.132 3.868 29 H 0.057 0.943 30 C 0.169 3.831 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.015 0.985 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.195 0.805 44 H 0.167 0.833 45 H 0.054 0.946 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 -16.617 -8.712 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.100 0.900 13 C -0.140 4.140 14 C -0.166 4.166 15 C -0.012 4.012 16 N -0.314 5.314 17 C 0.335 3.665 18 O -0.358 6.358 19 C -0.107 4.107 20 C -0.086 4.086 21 C -0.197 4.197 22 C 0.000 4.000 23 N -0.052 5.052 24 N -0.145 5.145 25 C -0.097 4.097 26 C -0.277 4.277 27 C 0.003 3.997 28 C 0.029 3.971 29 H 0.075 0.925 30 C 0.045 3.955 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.182 0.818 43 H 0.211 0.789 44 H 0.184 0.816 45 H 0.072 0.928 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.906 -16.066 -9.566 19.609 hybrid contribution 0.814 1.039 0.706 1.497 sum -5.092 -15.027 -8.860 18.173 Atomic orbital electron populations 1.70004 1.04475 1.24881 1.56056 1.24817 0.95671 0.97426 1.02198 0.86216 0.78576 0.84026 0.77491 1.21703 1.21714 1.20853 1.18961 0.90241 0.82419 1.44679 0.90723 1.44376 1.01789 0.99816 1.87349 1.21378 0.93872 0.86082 0.97165 1.21339 0.95752 0.94517 1.00510 0.89998 1.20488 1.01810 0.96594 0.95071 1.21129 0.96612 1.01399 0.97468 1.21008 0.96643 0.87124 0.96416 1.46532 1.40172 1.23431 1.21240 1.17800 0.80768 0.83125 0.84843 1.90948 1.55081 1.26642 1.63098 1.20603 1.04285 0.92230 0.93540 1.21697 0.95170 0.95121 0.96584 1.20547 1.06512 0.99795 0.92877 1.21401 0.96447 0.80836 1.01328 1.46179 1.41523 1.08960 1.08574 1.77803 1.29304 0.90768 1.16601 1.23915 0.94883 0.98738 0.92138 1.21624 1.13377 0.93042 0.99680 1.20116 0.99556 0.95021 0.85031 1.20992 0.94630 0.98990 0.82510 0.92459 1.21584 0.83709 0.86566 1.03648 0.93709 0.94978 0.96785 0.92432 0.91490 0.90785 0.91149 0.90883 0.92706 0.83583 0.82662 0.81756 0.78858 0.81572 0.92757 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.63 10.26 55.49 0.57 -27.06 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.72 10.26 -15.06 -0.15 -6.87 16 8 H 0.07 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.90 3.39 -171.74 -0.58 -16.48 16 10 C 0.14 2.94 6.65 -3.20 -0.02 2.92 16 11 C -0.10 -1.72 3.08 -91.51 -0.28 -2.00 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.10 -1.27 5.17 -28.72 -0.15 -1.42 16 14 C -0.13 -1.49 5.83 -28.27 -0.16 -1.66 16 15 C 0.11 1.39 4.83 -5.80 -0.03 1.36 16 16 N -0.58 -9.92 3.09 -172.18 -0.53 -10.45 16 17 C 0.55 10.46 6.31 -12.59 -0.08 10.38 16 18 O -0.48 -11.44 14.39 5.25 0.08 -11.36 16 19 C -0.10 -1.60 4.79 -102.68 -0.49 -2.09 16 20 C -0.06 -0.68 7.78 -38.75 -0.30 -0.99 16 21 C -0.18 -1.49 9.90 -40.14 -0.40 -1.89 16 22 C 0.13 1.32 11.12 -16.72 -0.19 1.13 16 23 N -0.28 -4.27 3.89 -9.42 -0.04 -4.31 16 24 N -0.32 -5.11 12.66 30.51 0.39 -4.72 16 25 C 0.08 1.26 11.95 -17.52 -0.21 1.05 16 26 C -0.25 -4.59 10.79 -39.35 -0.42 -5.01 16 27 C 0.12 2.09 6.87 -82.19 -0.56 1.53 16 28 C 0.13 2.59 3.02 -69.69 -0.21 2.38 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 C 0.17 4.33 4.14 -3.72 -0.02 4.31 16 31 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.95 7.00 -51.93 -0.36 0.59 16 38 H 0.07 0.89 5.77 -51.93 -0.30 0.59 16 39 H 0.05 0.53 6.95 -51.93 -0.36 0.17 16 40 H 0.15 1.21 6.40 -52.48 -0.34 0.88 16 41 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.17 3.51 8.06 -52.48 -0.42 3.08 16 45 H 0.05 1.59 7.37 -51.92 -0.38 1.20 16 46 H 0.08 2.20 4.69 -51.93 -0.24 1.96 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -36.29 358.58 -9.62 -45.91 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.11 Total: 2.49 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.78 Total: 2.92 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.19 Total: -63.02 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.29 -9.62 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050085937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.259 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds