Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48494 * 109.47155 * 269.99592 * 3 2 1 5 5 H 1.48507 * 109.47013 * 29.99962 * 3 2 1 6 6 H 1.48503 * 109.47101 * 149.99149 * 3 2 1 7 7 C 1.38810 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00550 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.46931 * 125.37368 * 179.97438 * 9 7 2 11 11 C 1.54180 * 106.26139 * 162.16678 * 10 9 7 12 12 H 1.08998 * 109.28464 * 271.45288 * 11 10 9 13 13 C 1.50710 * 110.50813 * 151.09391 * 11 10 9 14 14 C 1.51322 * 113.54889 * 289.39777 * 13 11 10 15 15 C 1.51639 * 111.97978 * 304.60753 * 14 13 11 16 16 N 1.44508 * 112.64854 * 42.75914 * 15 14 13 17 17 C 1.34777 * 116.62716 * 154.60504 * 16 15 14 18 18 O 1.21599 * 120.00090 * 183.34783 * 17 16 15 19 19 C 1.47469 * 119.99860 * 3.34759 * 17 16 15 20 20 C 1.39004 * 120.29556 * 49.45758 * 19 17 16 21 21 C 1.38504 * 120.36674 * 180.02562 * 20 19 17 22 22 C 1.37822 * 120.79060 * 359.97438 * 21 20 19 23 23 C 1.39215 * 120.20163 * 359.72308 * 22 21 20 24 24 N 1.37213 * 133.65074 * 179.55724 * 23 22 21 25 25 H 0.97005 * 125.98258 * 0.75905 * 24 23 22 26 26 N 1.40032 * 108.03945 * 180.49470 * 24 23 22 27 27 C 1.30269 * 109.69913 * 0.26452 * 26 24 23 28 28 C 1.40692 * 119.78392 * 0.55759 * 23 22 21 29 29 C 1.44104 * 126.74180 * 334.88399 * 16 15 14 30 30 H 1.09000 * 109.10778 * 253.58699 * 29 16 15 31 31 C 1.46811 * 125.37520 * 0.02562 * 9 7 2 32 32 H 0.96994 * 120.00120 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.09657 * 42.96637 * 10 9 7 34 34 H 1.09001 * 110.09533 * 281.36966 * 10 9 7 35 35 H 1.08998 * 108.67115 * 168.34006 * 13 11 10 36 36 H 1.09003 * 108.66270 * 50.44182 * 13 11 10 37 37 H 1.08998 * 108.98209 * 183.96811 * 14 13 11 38 38 H 1.08997 * 108.98382 * 65.25160 * 14 13 11 39 39 H 1.09002 * 108.84204 * 281.94133 * 15 14 13 40 40 H 1.09003 * 108.84267 * 163.57515 * 15 14 13 41 41 H 1.08000 * 119.81539 * 0.04122 * 20 19 17 42 42 H 1.08001 * 119.60564 * 180.02562 * 21 20 19 43 43 H 1.08009 * 119.89995 * 180.02562 * 22 21 20 44 44 H 1.08001 * 125.64800 * 180.02562 * 27 26 24 45 45 H 1.08997 * 109.84158 * 300.37963 * 31 9 7 46 46 H 1.09000 * 109.84348 * 61.29272 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9378 -3.7238 0.0005 11 6 0.8369 -4.7033 0.4538 12 1 0.8494 -4.7809 1.5410 13 6 1.0636 -6.0670 -0.1465 14 6 0.8066 -6.1219 -1.6367 15 6 -0.5867 -5.6394 -1.9905 16 7 -0.9675 -4.4533 -1.2580 17 6 -1.8932 -3.6598 -1.8324 18 8 -2.2141 -2.6153 -1.2989 19 6 -2.5168 -4.0583 -3.1080 20 6 -3.0427 -5.3357 -3.2625 21 6 -3.6282 -5.7117 -4.4600 22 6 -3.7010 -4.8304 -5.5171 23 6 -3.1890 -3.5420 -5.3913 24 7 -3.1070 -2.4681 -6.2415 25 1 -3.4365 -2.4366 -7.1533 26 7 -2.4699 -1.4235 -5.5605 27 6 -2.1604 -1.8093 -4.3553 28 6 -2.5853 -3.1447 -4.1841 29 6 -0.4561 -4.0283 0.0204 30 1 -1.2156 -4.1992 0.7833 31 6 -0.1361 -2.5256 -0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 2.7748 -3.7521 0.6982 34 1 2.2773 -3.9801 -1.0030 35 1 0.4039 -6.7800 0.3479 36 1 2.0958 -6.3632 0.0407 37 1 0.9231 -7.1502 -1.9789 38 1 1.5387 -5.4954 -2.1461 39 1 -1.3005 -6.4333 -1.7709 40 1 -0.6232 -5.4210 -3.0578 41 1 -2.9947 -6.0388 -2.4441 42 1 -4.0333 -6.7072 -4.5665 43 1 -4.1611 -5.1386 -6.4444 44 1 -1.6617 -1.2071 -3.6102 45 1 -0.5537 -2.0436 0.8834 46 1 -0.5499 -2.0703 -0.9003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050108197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 109.794935 kcal Electronic energy + Delta-G solvation = -30947.651613 eV Core-core repulsion = 27033.218997 eV Total energy + Delta-G solvation = -3914.432617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57389 -40.42336 -37.83094 -36.85389 -35.35520 -33.17708 -32.55179 -31.94919 -30.09706 -29.82455 -29.24748 -27.14204 -25.59739 -24.46914 -23.45429 -22.52032 -22.20603 -21.54307 -20.74113 -19.77686 -18.00662 -17.70292 -16.99452 -16.72390 -16.13144 -15.58301 -15.38474 -15.14915 -14.78223 -14.73846 -14.47827 -14.04425 -13.90409 -13.70073 -13.68641 -13.32917 -13.05563 -12.49624 -12.27006 -12.02931 -11.93228 -11.67852 -11.55808 -11.24795 -10.99241 -10.91502 -10.87137 -10.72240 -10.57647 -10.30083 -10.27877 -10.20893 -9.97596 -9.86193 -9.56414 -8.97058 -8.70551 -8.38432 -8.03308 -7.91925 -6.61220 -5.51579 -2.87886 0.61270 1.35560 2.58429 2.69993 3.04540 3.37806 3.49232 3.53716 3.56177 3.81324 4.45459 4.62049 4.67833 4.78190 4.88213 4.90184 4.98376 5.01700 5.15498 5.17685 5.25441 5.42586 5.57354 5.59104 5.66450 5.71991 5.76615 5.84671 5.87954 5.96704 6.03156 6.12321 6.17852 6.25723 6.27360 6.28524 6.46451 6.50052 6.64882 6.67120 6.76778 6.84306 7.15836 7.23561 7.59312 7.64762 7.81755 7.91158 8.19803 8.45718 8.68881 9.38523 9.99363 10.63982 11.56425 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.004950 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.781474 B = 5654.872681 C = 7652.953318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.116 3.884 16 N -0.581 5.581 17 C 0.533 3.467 18 O -0.483 6.483 19 C -0.031 4.031 20 C -0.135 4.135 21 C -0.073 4.073 22 C -0.134 4.134 23 C 0.123 3.877 24 N -0.513 5.513 25 H 0.439 0.561 26 N -0.252 5.252 27 C 0.097 3.903 28 C -0.137 4.137 29 C 0.130 3.870 30 H 0.058 0.942 31 C 0.163 3.837 32 H 0.252 0.748 33 H 0.031 0.969 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.202 0.798 45 H 0.051 0.949 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -17.454 -9.534 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.362 4.362 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.166 4.166 15 C -0.007 4.007 16 N -0.314 5.314 17 C 0.319 3.681 18 O -0.357 6.357 19 C -0.037 4.037 20 C -0.155 4.155 21 C -0.094 4.094 22 C -0.156 4.156 23 C 0.006 3.994 24 N -0.227 5.227 25 H 0.284 0.716 26 N -0.066 5.066 27 C -0.099 4.099 28 C -0.146 4.146 29 C 0.027 3.973 30 H 0.076 0.924 31 C 0.039 3.961 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.219 0.781 45 H 0.069 0.931 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.716 -15.661 -10.041 19.778 hybrid contribution 0.306 0.174 0.049 0.356 sum -6.409 -15.487 -9.992 19.513 Atomic orbital electron populations 1.70009 1.04426 1.24797 1.56052 1.24811 0.95670 0.97373 1.02286 0.86232 0.78576 0.84121 0.77482 1.21731 1.21741 1.20879 1.18958 0.90214 0.82464 1.44612 0.90793 1.44411 1.01941 0.99738 1.87296 1.21373 0.93835 0.86141 0.97116 1.21309 0.95864 0.94546 1.00431 0.90194 1.20481 1.01719 0.96579 0.95143 1.21136 0.96761 1.01353 0.97372 1.20937 0.96377 0.87205 0.96214 1.46587 1.40312 1.23631 1.20914 1.18340 0.80944 0.84180 0.84595 1.90942 1.59891 1.21522 1.63342 1.19621 0.98169 0.93120 0.92833 1.21149 1.01049 0.94842 0.98435 1.20839 0.97418 0.99075 0.92043 1.20108 1.04536 0.90498 1.00477 1.18818 0.98988 0.90658 0.90951 1.46123 1.53767 1.08407 1.14444 0.71620 1.76850 1.12300 1.10384 1.07095 1.24236 0.97750 0.93848 0.94084 1.18698 1.06375 0.95349 0.94162 1.21147 0.94566 0.99144 0.82463 0.92418 1.21866 0.83471 0.86636 1.04172 0.93757 0.95097 0.96809 0.92491 0.91590 0.90859 0.91203 0.92682 0.90901 0.84796 0.84849 0.85577 0.78139 0.93078 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.70 10.26 55.49 0.57 -27.13 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.73 10.26 -15.06 -0.15 -6.89 16 8 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.97 3.39 -171.51 -0.58 -16.55 16 10 C 0.14 2.97 6.65 -3.19 -0.02 2.94 16 11 C -0.10 -1.74 3.05 -91.58 -0.28 -2.02 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.10 -1.28 5.17 -28.73 -0.15 -1.43 16 14 C -0.13 -1.52 5.83 -28.27 -0.16 -1.68 16 15 C 0.12 1.47 4.77 -5.79 -0.03 1.44 16 16 N -0.58 -9.89 3.09 -171.57 -0.53 -10.42 16 17 C 0.53 9.98 6.46 -12.50 -0.08 9.90 16 18 O -0.48 -11.23 13.70 5.28 0.07 -11.16 16 19 C -0.03 -0.48 4.53 -104.68 -0.47 -0.95 16 20 C -0.13 -1.52 7.86 -39.20 -0.31 -1.83 16 21 C -0.07 -0.66 9.99 -39.64 -0.40 -1.05 16 22 C -0.13 -1.30 10.06 -39.37 -0.40 -1.70 16 23 C 0.12 1.60 7.32 -84.17 -0.62 0.99 16 24 N -0.51 -6.49 7.45 32.35 0.24 -6.24 16 25 H 0.44 3.86 8.96 -182.64 -1.64 2.22 16 26 N -0.25 -4.11 12.58 30.81 0.39 -3.72 16 27 C 0.10 1.70 11.70 -17.10 -0.20 1.50 16 28 C -0.14 -2.20 5.98 -106.68 -0.64 -2.84 16 29 C 0.13 2.55 3.17 -69.29 -0.22 2.33 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 C 0.16 4.15 4.12 -3.53 -0.01 4.13 16 32 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.95 7.00 -51.93 -0.36 0.59 16 39 H 0.06 0.56 6.64 -51.93 -0.34 0.21 16 40 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 41 H 0.13 1.27 6.39 -52.49 -0.34 0.93 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.20 3.89 8.06 -52.49 -0.42 3.46 16 45 H 0.05 1.49 7.36 -51.93 -0.38 1.11 16 46 H 0.09 2.52 4.39 -51.99 -0.23 2.30 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -35.28 356.63 -11.04 -46.32 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.32 Total: 3.04 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -4.24 Total: 2.64 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.09 Total: -64.06 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.28 -11.04 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050108197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.119 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds