Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99523 * 2 1 4 4 H 1.48497 * 109.47096 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47175 * 30.00401 * 3 2 1 6 6 H 1.48506 * 109.47037 * 149.99971 * 3 2 1 7 7 C 1.38810 * 120.00667 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00518 * 196.41439 * 7 2 1 9 9 N 1.36944 * 119.99525 * 16.40841 * 7 2 1 10 10 C 1.46894 * 120.46167 * 29.32529 * 9 7 2 11 11 C 1.53358 * 108.73890 * 124.38559 * 10 9 7 12 12 C 1.52560 * 109.12227 * 52.26152 * 11 10 9 13 13 C 1.52959 * 114.06544 * 75.54225 * 12 11 10 14 14 N 1.47156 * 87.85577 * 139.43646 * 13 12 11 15 15 C 1.34776 * 135.99585 * 153.33690 * 14 13 12 16 16 O 1.21627 * 120.00557 * 3.36649 * 15 14 13 17 17 C 1.47258 * 119.99738 * 183.36469 * 15 14 13 18 18 C 1.38934 * 120.90652 * 352.56364 * 17 15 14 19 19 C 1.39767 * 119.19377 * 179.72366 * 18 17 15 20 20 C 1.35071 * 121.27581 * 359.97438 * 19 18 17 21 21 N 1.36232 * 121.76417 * 359.97438 * 20 19 18 22 22 N 1.40082 * 132.48251 * 180.02562 * 21 20 19 23 23 C 1.31363 * 108.88401 * 180.02562 * 22 21 20 24 24 C 1.38878 * 108.94182 * 359.97438 * 23 22 21 25 25 C 1.37178 * 120.19237 * 0.05204 * 21 20 19 26 26 C 1.47163 * 87.99871 * 333.59271 * 14 13 12 27 27 C 1.52559 * 113.43411 * 302.66549 * 12 11 10 28 28 C 1.46881 * 120.46183 * 209.35010 * 9 7 2 29 29 H 0.97005 * 120.00519 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.59151 * 4.61356 * 10 9 7 31 31 H 1.08995 * 109.59375 * 244.16430 * 10 9 7 32 32 H 1.08995 * 109.52940 * 292.37090 * 11 10 9 33 33 H 1.08996 * 109.58689 * 172.18714 * 11 10 9 34 34 H 1.09007 * 113.48677 * 24.68781 * 13 12 11 35 35 H 1.09002 * 113.54386 * 254.19880 * 13 12 11 36 36 H 1.08000 * 120.40471 * 359.70782 * 18 17 15 37 37 H 1.07998 * 119.36860 * 179.97438 * 19 18 17 38 38 H 1.07992 * 119.12029 * 180.02562 * 20 19 18 39 39 H 1.07994 * 125.53216 * 180.02562 * 23 22 21 40 40 H 1.08004 * 126.22049 * 179.97438 * 24 23 22 41 41 H 1.09001 * 113.48866 * 141.15990 * 26 14 13 42 42 H 1.08999 * 113.49140 * 271.66284 * 26 14 13 43 43 H 1.08998 * 109.52405 * 177.21990 * 27 12 11 44 44 H 1.08997 * 109.52519 * 297.42930 * 27 12 11 45 45 H 1.09004 * 109.59354 * 355.38443 * 28 9 7 46 46 H 1.08998 * 109.59544 * 115.82372 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0573 -1.2210 0.2648 9 7 1.3675 -2.3640 -0.3340 10 6 0.2330 -2.3455 -1.2669 11 6 0.5320 -3.3050 -2.4253 12 6 0.9175 -4.6679 -1.8585 13 6 -0.2650 -5.4791 -1.3261 14 7 0.3531 -6.6713 -1.9280 15 6 0.3359 -7.9975 -1.6889 16 8 -0.3701 -8.4474 -0.8066 17 6 1.1719 -8.9020 -2.4960 18 6 1.8664 -8.4331 -3.6042 19 6 2.6540 -9.3218 -4.3414 20 6 2.7520 -10.6240 -3.9963 21 7 2.0919 -11.1319 -2.9183 22 7 2.0320 -12.4175 -2.3652 23 6 1.2453 -12.3916 -1.3134 24 6 0.7662 -11.0996 -1.1406 25 6 1.2998 -10.3186 -2.1484 26 6 1.0033 -5.7793 -2.9013 27 6 2.1126 -4.6153 -0.9117 28 6 1.8024 -3.6462 0.2356 29 1 -0.4851 0.8400 0.0004 30 1 0.0952 -1.3362 -1.6547 31 1 -0.6709 -2.6673 -0.7498 32 1 1.3559 -2.9118 -3.0207 33 1 -0.3537 -3.4083 -3.0521 34 1 -1.2179 -5.2075 -1.7805 35 1 -0.3124 -5.5168 -0.2378 36 1 1.7982 -7.3946 -3.8927 37 1 3.1947 -8.9603 -5.2036 38 1 3.3709 -11.2799 -4.5904 39 1 1.0101 -13.2375 -0.6846 40 1 0.0972 -10.7660 -0.3611 41 1 2.0262 -6.0698 -3.1411 42 1 0.3990 -5.5902 -3.7886 43 1 2.3013 -5.6099 -0.5077 44 1 2.9920 -4.2683 -1.4541 45 1 2.6983 -3.4937 0.8374 46 1 1.0077 -4.0583 0.8574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050579928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = 150.521170 kcal Electronic energy + Delta-G solvation = -29408.290544 eV Core-core repulsion = 25495.623950 eV Total energy + Delta-G solvation = -3912.666595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.15632 -40.90291 -38.39143 -37.28453 -35.96026 -33.23461 -32.43707 -30.92805 -30.73544 -29.87996 -28.89390 -27.26368 -26.20619 -24.84255 -23.94893 -22.88551 -22.44333 -21.84319 -20.98715 -19.56922 -18.19646 -17.74997 -17.51730 -16.57455 -16.37231 -16.00715 -15.86232 -15.75100 -15.45834 -14.89212 -14.17583 -14.05110 -13.88451 -13.79604 -13.58703 -13.41481 -13.09277 -12.77769 -12.63999 -12.61930 -12.27046 -12.09107 -11.86552 -11.57486 -11.47308 -11.10011 -11.02657 -10.78216 -10.60894 -10.51527 -10.36169 -10.13717 -10.01621 -9.83997 -9.67060 -9.65612 -9.42222 -8.69129 -8.49908 -7.88240 -6.69069 -5.82662 -3.26860 0.06934 0.83709 1.90368 2.46846 2.53898 2.75298 3.34893 3.37850 3.42455 3.43375 3.92091 4.08737 4.28671 4.33512 4.45550 4.47943 4.56084 4.94036 4.96588 5.11201 5.18061 5.27664 5.31282 5.35576 5.38705 5.46688 5.52229 5.58676 5.64891 5.75159 5.83333 5.87822 5.98503 6.00948 6.05721 6.21519 6.39155 6.41590 6.51351 6.54583 6.55601 6.60038 6.76651 6.91640 7.27276 7.28106 7.60448 7.70532 7.76540 8.10335 8.42713 9.18152 9.80820 10.37367 11.25430 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.002405 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.216669 B =11640.229809 C =11914.471336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.125 4.125 12 C -0.073 4.073 13 C 0.118 3.882 14 N -0.636 5.636 15 C 0.591 3.409 16 O -0.531 6.531 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.179 4.179 20 C 0.137 3.863 21 N -0.287 5.287 22 N -0.319 5.319 23 C 0.079 3.921 24 C -0.256 4.256 25 C 0.127 3.873 26 C 0.088 3.912 27 C -0.107 4.107 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.195 0.805 40 H 0.166 0.834 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -18.357 -10.922 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.164 4.164 12 C -0.074 4.074 13 C -0.004 4.004 14 N -0.370 5.370 15 C 0.381 3.619 16 O -0.409 6.409 17 C -0.124 4.124 18 C -0.075 4.075 19 C -0.201 4.201 20 C 0.011 3.989 21 N -0.054 5.054 22 N -0.141 5.141 23 C -0.099 4.099 24 C -0.285 4.285 25 C 0.008 3.992 26 C -0.035 4.035 27 C -0.146 4.146 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.212 0.788 40 H 0.184 0.816 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.980 -19.570 -11.039 22.818 hybrid contribution -0.086 1.253 0.336 1.300 sum 3.894 -18.317 -10.703 21.569 Atomic orbital electron populations 1.70011 1.05253 1.25557 1.53805 1.25068 0.95278 0.98426 1.00735 0.86301 0.79145 0.83698 0.77676 1.21433 1.21780 1.20453 1.19189 0.92373 0.84698 1.42050 0.91749 1.44016 1.36560 1.01826 1.48861 1.20789 0.88762 0.98378 0.87569 1.22084 1.00230 0.93960 1.00171 1.21666 0.96210 0.94220 0.95336 1.23120 0.97092 0.79621 1.00538 1.49455 1.49310 1.03809 1.34411 1.17043 0.81727 0.79658 0.83424 1.90791 1.42100 1.74792 1.33256 1.20394 1.02871 0.90458 0.98666 1.22418 0.91672 1.01377 0.92077 1.20689 1.04254 0.91525 1.03614 1.21533 0.94629 0.95591 0.87151 1.46228 1.31480 1.08042 1.19650 1.77849 1.26981 0.94416 1.14879 1.23972 0.93410 0.98333 0.94203 1.21556 1.10849 0.92017 1.04079 1.20139 0.94997 0.90256 0.93790 1.23490 0.98003 0.87775 0.94190 1.21731 0.95650 0.99444 0.97824 1.20882 0.97716 0.86885 0.92500 0.93584 0.89152 0.96274 0.91789 0.92728 0.89620 0.90006 0.82401 0.82243 0.81377 0.78799 0.81642 0.90071 0.89210 0.92960 0.91628 0.92595 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 11.20 55.49 0.62 -24.56 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.25 -6.62 9.56 -15.06 -0.14 -6.77 16 8 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.78 2.96 -172.18 -0.51 -14.28 16 10 C 0.17 3.68 5.26 -3.64 -0.02 3.66 16 11 C -0.12 -1.98 5.31 -26.77 -0.14 -2.12 16 12 C -0.07 -1.04 0.83 -155.17 -0.13 -1.17 16 13 C 0.12 1.72 7.56 -8.22 -0.06 1.66 16 14 N -0.64 -8.63 3.46 -186.69 -0.65 -9.28 16 15 C 0.59 9.01 8.00 -12.60 -0.10 8.91 16 16 O -0.53 -9.80 16.02 5.25 0.08 -9.72 16 17 C -0.12 -1.53 6.06 -102.68 -0.62 -2.15 16 18 C -0.05 -0.49 9.29 -38.75 -0.36 -0.84 16 19 C -0.18 -1.24 9.90 -40.14 -0.40 -1.64 16 20 C 0.14 1.14 11.12 -16.72 -0.19 0.95 16 21 N -0.29 -3.47 3.89 -9.42 -0.04 -3.51 16 22 N -0.32 -4.00 12.66 30.51 0.39 -3.62 16 23 C 0.08 0.88 11.95 -17.52 -0.21 0.67 16 24 C -0.26 -3.42 10.19 -39.35 -0.40 -3.82 16 25 C 0.13 1.73 6.85 -82.19 -0.56 1.17 16 26 C 0.09 0.95 5.68 -8.38 -0.05 0.90 16 27 C -0.11 -1.69 5.26 -26.78 -0.14 -1.83 16 28 C 0.15 2.90 6.41 -3.65 -0.02 2.88 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.09 2.23 6.00 -51.93 -0.31 1.92 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 1.16 8.06 -51.92 -0.42 0.75 16 35 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 36 H 0.16 1.17 3.97 -52.49 -0.21 0.96 16 37 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.17 2.28 7.13 -52.48 -0.37 1.91 16 41 H 0.08 0.73 6.13 -51.93 -0.32 0.41 16 42 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.05 0.79 7.95 -51.93 -0.41 0.38 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 46 H 0.02 0.39 7.60 -51.93 -0.39 -0.01 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -33.19 368.48 -9.37 -42.57 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.17 Total: 0.44 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.63 Total: 0.48 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.18 Total: -55.24 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.19 -9.37 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050579928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.089 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds