Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00208 * 2 1 4 4 H 1.48497 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.46963 * 300.00288 * 3 2 1 6 6 H 1.48502 * 109.46853 * 60.00041 * 3 2 1 7 7 C 1.38815 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00148 * 166.85889 * 7 2 1 9 9 N 1.36930 * 119.99805 * 346.58930 * 7 2 1 10 10 C 1.46888 * 120.46659 * 324.43917 * 9 7 2 11 11 C 1.52861 * 109.01575 * 235.49356 * 10 9 7 12 12 C 1.52679 * 109.17533 * 307.81309 * 11 10 9 13 13 C 1.53485 * 113.62111 * 188.99472 * 12 11 10 14 14 N 1.47673 * 85.98689 * 137.71205 * 13 12 11 15 15 C 1.34767 * 134.45879 * 155.66210 * 14 13 12 16 16 O 1.21644 * 120.00181 * 184.82488 * 15 14 13 17 17 C 1.47227 * 119.99840 * 4.82070 * 15 14 13 18 18 C 1.38934 * 120.86108 * 6.64103 * 17 15 14 19 19 C 1.39745 * 119.29555 * 179.79151 * 18 17 15 20 20 C 1.35116 * 121.13794 * 0.44670 * 19 18 17 21 21 N 1.36144 * 121.72228 * 359.80770 * 20 19 18 22 22 C 1.37011 * 132.64088 * 179.97438 * 21 20 19 23 23 C 1.34963 * 107.14526 * 180.02562 * 22 21 20 24 24 N 1.33735 * 108.60791 * 359.97438 * 23 22 21 25 25 C 1.31982 * 109.17541 * 0.02562 * 24 23 22 26 26 C 1.47672 * 91.08533 * 335.68008 * 14 13 12 27 27 C 1.52669 * 113.18388 * 57.46336 * 12 11 10 28 28 C 1.46882 * 120.46829 * 144.71750 * 9 7 2 29 29 H 0.97000 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58782 * 355.31187 * 10 9 7 31 31 H 1.08995 * 109.59101 * 115.75263 * 10 9 7 32 32 H 1.09001 * 109.60650 * 187.84419 * 11 10 9 33 33 H 1.08996 * 109.45334 * 67.69046 * 11 10 9 34 34 H 1.08999 * 113.78688 * 251.97737 * 13 12 11 35 35 H 1.08997 * 113.79333 * 23.44165 * 13 12 11 36 36 H 1.08004 * 120.35533 * 359.97021 * 18 17 15 37 37 H 1.07998 * 119.43094 * 180.26002 * 19 18 17 38 38 H 1.08005 * 119.13623 * 179.78737 * 20 19 18 39 39 H 1.07992 * 126.42560 * 0.02562 * 22 21 20 40 40 H 1.08006 * 125.69132 * 179.97438 * 23 22 21 41 41 H 1.09005 * 113.78641 * 270.05329 * 26 14 13 42 42 H 1.08999 * 113.89994 * 138.59844 * 26 14 13 43 43 H 1.08994 * 109.52992 * 182.52135 * 27 12 11 44 44 H 1.09000 * 109.59169 * 62.33829 * 27 12 11 45 45 H 1.09005 * 109.58825 * 244.25618 * 28 9 7 46 46 H 1.09000 * 109.58773 * 4.68270 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0690 -1.2145 -0.2121 9 7 1.3535 -2.3717 0.2761 10 6 0.2645 -2.4001 1.2614 11 6 0.5830 -3.4500 2.3257 12 6 0.9054 -4.7761 1.6414 13 6 1.0272 -5.9568 2.6145 14 7 0.2635 -6.7271 1.6125 15 6 0.1521 -8.0363 1.3129 16 8 -0.5062 -8.3865 0.3517 17 6 0.8273 -9.0428 2.1487 18 6 1.4688 -8.6775 3.3257 19 6 2.0956 -9.6604 4.0964 20 6 2.0954 -10.9556 3.7115 21 7 1.4850 -11.3614 2.5642 22 6 1.3485 -12.5881 1.9694 23 6 0.6417 -12.4035 0.8345 24 7 0.3452 -11.1042 0.7230 25 6 0.8453 -10.4551 1.7576 26 6 -0.3290 -5.4880 1.0702 27 6 2.0644 -4.6762 0.6528 28 6 1.7323 -3.6168 -0.4049 29 1 -0.4850 0.8400 0.0004 30 1 0.1720 -1.4213 1.7321 31 1 -0.6707 -2.6591 0.7651 32 1 -0.2779 -3.5784 2.9819 33 1 1.4424 -3.1239 2.9115 34 1 2.0495 -6.3083 2.7535 35 1 0.4952 -5.8087 3.5542 36 1 1.4804 -7.6453 3.6433 37 1 2.5912 -9.3795 5.0138 38 1 2.5927 -11.6881 4.3301 39 1 1.7341 -13.5266 2.3392 40 1 0.3623 -13.1761 0.1335 41 1 -1.2641 -5.2006 1.5511 42 1 -0.3855 -5.4651 -0.0181 43 1 2.2140 -5.6408 0.1679 44 1 2.9730 -4.3898 1.1825 45 1 0.9026 -3.9632 -1.0212 46 1 2.6063 -3.4393 -1.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050698406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = 132.539576 kcal Electronic energy + Delta-G solvation = -29399.009443 eV Core-core repulsion = 25485.563107 eV Total energy + Delta-G solvation = -3913.446335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94422 -40.71560 -38.27742 -37.39681 -35.81328 -33.80531 -32.43101 -30.79548 -30.43614 -29.85567 -29.09695 -27.15434 -26.30929 -24.78542 -23.87765 -22.83830 -22.37928 -22.07231 -20.94169 -19.67147 -18.18751 -17.93050 -17.64650 -16.47553 -16.31702 -16.17663 -15.75560 -15.72888 -15.40124 -14.84864 -14.34326 -14.02909 -13.89059 -13.75979 -13.65552 -13.49584 -13.16584 -12.83902 -12.72814 -12.56072 -12.18139 -12.16232 -11.81149 -11.63073 -11.40064 -11.08111 -11.04280 -10.77594 -10.49396 -10.31497 -10.20966 -10.15618 -9.89657 -9.78214 -9.64279 -9.29867 -9.11690 -8.54955 -8.47835 -8.18949 -6.55835 -5.80187 -3.30670 0.03545 0.97640 2.17251 2.52118 2.79489 2.86832 3.35346 3.43798 3.45635 3.53290 3.83454 3.97972 4.27864 4.34980 4.45468 4.48010 4.60134 4.85848 5.04881 5.12386 5.17438 5.20165 5.31248 5.36572 5.39767 5.44985 5.53687 5.57461 5.62117 5.63708 5.87293 5.96266 6.05101 6.07522 6.13876 6.27892 6.36051 6.43643 6.56836 6.61076 6.65817 6.71227 6.83678 6.98908 7.29429 7.59383 7.71872 7.79214 7.81029 8.27226 8.49928 9.22252 9.82919 10.43822 11.27797 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028410 B = 0.002382 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.317525 B =11752.084560 C =12067.968032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.175 3.825 11 C -0.127 4.127 12 C -0.071 4.071 13 C 0.090 3.910 14 N -0.636 5.636 15 C 0.578 3.422 16 O -0.508 6.508 17 C -0.081 4.081 18 C -0.071 4.071 19 C -0.155 4.155 20 C 0.080 3.920 21 N -0.373 5.373 22 C -0.101 4.101 23 C 0.028 3.972 24 N -0.460 5.460 25 C 0.253 3.747 26 C 0.123 3.877 27 C -0.109 4.109 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.080 0.920 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -21.833 12.907 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.079 0.921 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.167 4.167 12 C -0.072 4.072 13 C -0.032 4.032 14 N -0.371 5.371 15 C 0.366 3.634 16 O -0.384 6.384 17 C -0.087 4.087 18 C -0.095 4.095 19 C -0.176 4.176 20 C -0.043 4.043 21 N -0.046 5.046 22 C -0.230 4.230 23 C -0.122 4.122 24 N -0.178 5.178 25 C 0.006 3.994 26 C 0.001 3.999 27 C -0.148 4.148 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.202 0.798 40 H 0.199 0.801 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.963 -21.842 11.633 25.062 hybrid contribution 0.902 0.231 0.877 1.279 sum 4.866 -21.611 12.510 25.440 Atomic orbital electron populations 1.70009 1.05328 1.25477 1.53388 1.25240 0.95286 0.98523 0.99972 0.86267 0.79460 0.84004 0.77279 1.20196 1.21655 1.21552 1.19140 0.91257 0.84227 1.44081 0.92096 1.43915 1.40025 1.03943 1.43268 1.20588 0.89746 0.96653 0.88143 1.22071 1.00489 0.94804 0.99332 1.21982 0.95938 0.93911 0.95410 1.23664 0.96340 0.89657 0.93573 1.49916 1.47129 1.03861 1.36241 1.17189 0.81304 0.80337 0.84541 1.90890 1.40711 1.79212 1.27566 1.20217 1.02876 0.88704 0.96890 1.22246 0.93366 1.01459 0.92382 1.20683 1.03539 0.90992 1.02346 1.21669 0.97254 0.97845 0.87565 1.42944 1.35845 1.09137 1.16719 1.22685 1.12908 0.87994 0.99422 1.22725 0.98791 0.93966 0.96753 1.70845 1.22456 1.04381 1.20128 1.21580 0.97922 0.90544 0.89400 1.23302 0.96977 0.78477 1.01124 1.21776 0.96037 0.99482 0.97511 1.20905 0.97864 0.86877 0.92342 0.93640 0.90204 0.96161 0.92771 0.91912 0.89903 0.89358 0.82331 0.82547 0.81808 0.79826 0.80056 0.89645 0.89663 0.92895 0.91760 0.96272 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.50 55.49 0.64 -24.86 16 2 C 0.01 0.25 4.95 -17.43 -0.09 0.17 16 3 Si 0.90 21.16 29.57 -169.99 -5.03 16.13 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.26 -6.83 9.49 -15.06 -0.14 -6.97 16 8 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 9 N -0.59 -14.05 2.93 -172.50 -0.51 -14.55 16 10 C 0.17 3.83 5.14 -3.90 -0.02 3.81 16 11 C -0.13 -2.07 5.24 -26.97 -0.14 -2.21 16 12 C -0.07 -1.05 0.77 -154.42 -0.12 -1.17 16 13 C 0.09 1.02 5.38 -3.16 -0.02 1.00 16 14 N -0.64 -9.26 3.43 -181.55 -0.62 -9.88 16 15 C 0.58 9.72 7.98 -12.61 -0.10 9.62 16 16 O -0.51 -10.76 16.96 5.24 0.09 -10.67 16 17 C -0.08 -1.13 6.06 -102.64 -0.62 -1.75 16 18 C -0.07 -0.66 9.19 -38.76 -0.36 -1.02 16 19 C -0.15 -1.00 9.91 -40.13 -0.40 -1.40 16 20 C 0.08 0.55 10.88 -16.75 -0.18 0.37 16 21 N -0.37 -3.96 2.94 -61.09 -0.18 -4.14 16 22 C -0.10 -0.91 11.76 -16.40 -0.19 -1.10 16 23 C 0.03 0.32 11.83 -17.89 -0.21 0.11 16 24 N -0.46 -7.54 10.72 -11.32 -0.12 -7.66 16 25 C 0.25 3.72 7.67 -154.13 -1.18 2.54 16 26 C 0.12 1.90 7.63 -3.14 -0.02 1.88 16 27 C -0.11 -1.79 5.22 -26.73 -0.14 -1.93 16 28 C 0.15 3.00 6.38 -3.66 -0.02 2.98 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.08 1.98 6.41 -51.93 -0.33 1.65 16 31 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.79 6.80 -51.93 -0.35 0.44 16 35 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.16 1.20 4.16 -52.48 -0.22 0.98 16 37 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.16 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.18 1.47 8.06 -52.48 -0.42 1.04 16 41 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 42 H 0.08 1.49 7.41 -51.93 -0.38 1.10 16 43 H 0.05 0.85 8.01 -51.93 -0.42 0.43 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.41 7.49 -51.93 -0.39 0.02 16 46 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -36.13 370.05 -10.38 -46.51 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.27 Total: -1.36 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.96 Total: 4.91 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.79 Total: -61.09 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.13 -10.38 -46.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050698406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.045 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds